data_8SJ8
#
_model_server_result.job_id            2lIVbr7zPYdFm58DQAK0Tg 
_model_server_result.datetime_utc      '2024-10-15 12:18:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sj8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    8SJ8 
#
_exptl.entry_id    8SJ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              868.386 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SJ8 
_cell.length_a            47.766 
_cell.length_b            59.584 
_cell.length_c            124.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SJ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 237 A HIS 390 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc2 A SG CYS 243 A CYS 396 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc3 A SG CYS 244 A CYS 397 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc4 A SG CYS 251 A CYS 404 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
#
_chem_comp.formula           'C20 H28 N10 O21 P4' 
_chem_comp.formula_weight    868.386 
_chem_comp.id                OKR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O19 C18 OKR sing 237 n n 
C7 C6 OKR sing 238 n n 
C7 O2 OKR sing 239 n n 
C6 C18 OKR sing 240 n n 
C6 O1 OKR sing 241 n n 
O2 P1 OKR sing 242 n n 
C18 C19 OKR sing 243 n n 
O1 C5 OKR sing 244 n n 
O6 C9 OKR sing 245 n n 
O3 P1 OKR doub 246 n n 
N8 C16 OKR sing 247 n n 
O8 P2 OKR doub 248 n n 
O9 P2 OKR sing 249 n n 
N7 C16 OKR sing 250 n n 
N7 C15 OKR sing 251 n n 
P1 O5 OKR sing 252 n n 
P1 O4 OKR sing 253 n n 
C16 N9 OKR doub 254 n n 
C19 C5 OKR sing 255 n n 
C19 O20 OKR sing 256 n n 
O18 C15 OKR doub 257 n n 
C5 N4 OKR sing 258 n n 
C9 C8 OKR sing 259 n n 
C9 C10 OKR sing 260 n n 
C15 C14 OKR sing 261 n n 
C8 O5 OKR sing 262 n n 
C8 C12 OKR sing 263 n n 
P2 O7 OKR sing 264 n n 
P2 O10 OKR sing 265 n n 
N9 C17 OKR sing 266 n n 
C14 C17 OKR doub 267 n y 
C14 N6 OKR sing 268 n y 
C17 N5 OKR sing 269 n y 
O7 C11 OKR sing 270 n n 
N6 C13 OKR doub 271 n y 
N2 C1 OKR doub 272 n n 
N2 C2 OKR sing 273 n n 
N1 C1 OKR sing 274 n n 
N5 C13 OKR sing 275 n y 
N5 C12 OKR sing 276 n n 
O12 P3 OKR doub 277 n n 
N4 C2 OKR sing 278 n y 
N4 C4 OKR sing 279 n y 
C12 O17 OKR sing 280 n n 
C10 C11 OKR sing 281 n n 
C10 O17 OKR sing 282 n n 
C1 N10 OKR sing 283 n n 
O10 P3 OKR sing 284 n n 
C2 C3 OKR doub 285 n y 
O14 P4 OKR doub 286 n n 
P3 O11 OKR sing 287 n n 
P3 O13 OKR sing 288 n n 
C4 N3 OKR doub 289 n y 
N10 C20 OKR sing 290 n n 
C3 N3 OKR sing 291 n y 
C3 C20 OKR sing 292 n n 
P4 O13 OKR sing 293 n n 
P4 O16 OKR sing 294 n n 
P4 O15 OKR sing 295 n n 
C20 O21 OKR doub 296 n n 
N1 H1 OKR sing 297 n n 
N1 H2 OKR sing 298 n n 
C4 H3 OKR sing 299 n n 
C5 H4 OKR sing 300 n n 
C6 H5 OKR sing 301 n n 
C7 H6 OKR sing 302 n n 
C7 H7 OKR sing 303 n n 
O4 H8 OKR sing 304 n n 
C8 H9 OKR sing 305 n n 
C9 H10 OKR sing 306 n n 
O6 H11 OKR sing 307 n n 
C10 H12 OKR sing 308 n n 
C11 H13 OKR sing 309 n n 
C11 H14 OKR sing 310 n n 
O9 H15 OKR sing 311 n n 
O11 H16 OKR sing 312 n n 
O15 H17 OKR sing 313 n n 
O16 H18 OKR sing 314 n n 
C12 H19 OKR sing 315 n n 
C13 H20 OKR sing 316 n n 
N7 H21 OKR sing 317 n n 
N8 H22 OKR sing 318 n n 
N8 H23 OKR sing 319 n n 
C18 H24 OKR sing 320 n n 
O19 H25 OKR sing 321 n n 
C19 H26 OKR sing 322 n n 
O20 H27 OKR sing 323 n n 
N10 H28 OKR sing 324 n n 
#
_atom_sites.entry_id                     8SJ8 
_atom_sites.fract_transf_matrix[1][1]    0.020935 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016783 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008016 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 601 602 ZN ZN . 
C 3 OKR A 1 602 603 OKR GpG . 
D 4 HOH A 1 701 4 HOH HOH . 
D 4 HOH A 2 702 2 HOH HOH . 
D 4 HOH A 3 703 3 HOH HOH . 
D 4 HOH A 4 704 5 HOH HOH . 
D 4 HOH A 5 705 1 HOH HOH . 
D 4 HOH A 6 706 6 HOH HOH . 
D 4 HOH A 7 707 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 OKR . . . C 3 8.956 17.164 20.49 1 66.3 ? N1 OKR 602 A 1 
HETATM 2 C C1 OKR . . . C 3 10.284 17.272 20.631 1 63.95 ? C1 OKR 602 A 1 
HETATM 3 N N2 OKR . . . C 3 10.845 17.03 21.815 1 63.55 ? N2 OKR 602 A 1 
HETATM 4 C C2 OKR . . . C 3 12.193 17.18 21.777 1 63.13 ? C2 OKR 602 A 1 
HETATM 5 C C3 OKR . . . C 3 12.989 17.539 20.709 1 59.15 ? C3 OKR 602 A 1 
HETATM 6 N N3 OKR . . . C 3 14.33 17.583 21.09 1 58.52 ? N3 OKR 602 A 1 
HETATM 7 C C4 OKR . . . C 3 14.324 17.262 22.368 1 61.85 ? C4 OKR 602 A 1 
HETATM 8 N N4 OKR . . . C 3 13.047 16.997 22.837 1 65.15 ? N4 OKR 602 A 1 
HETATM 9 C C5 OKR . . . C 3 12.64 16.617 24.202 1 67.8 ? C5 OKR 602 A 1 
HETATM 10 O O1 OKR . . . C 3 11.887 15.427 24.135 1 67.87 ? O1 OKR 602 A 1 
HETATM 11 C C6 OKR . . . C 3 10.914 15.391 25.216 1 69.69 ? C6 OKR 602 A 1 
HETATM 12 C C7 OKR . . . C 3 9.559 15.077 24.628 1 67.33 ? C7 OKR 602 A 1 
HETATM 13 O O2 OKR . . . C 3 8.682 16.204 24.862 1 75.88 ? O2 OKR 602 A 1 
HETATM 14 P P1 OKR . . . C 3 7.219 16.262 24.201 1 88.22 ? P1 OKR 602 A 1 
HETATM 15 O O3 OKR . . . C 3 7.326 16.251 22.696 1 78.81 ? O3 OKR 602 A 1 
HETATM 16 O O4 OKR . . . C 3 6.378 15.192 24.844 1 78.05 ? O4 OKR 602 A 1 
HETATM 17 O O5 OKR . . . C 3 6.725 17.7 24.731 1 93.4 ? O5 OKR 602 A 1 
HETATM 18 C C8 OKR . . . C 3 7.738 18.684 24.513 1 93.46 ? C8 OKR 602 A 1 
HETATM 19 C C9 OKR . . . C 3 7.978 19.509 25.774 1 106.14 ? C9 OKR 602 A 1 
HETATM 20 O O6 OKR . . . C 3 8.073 18.761 26.982 1 105.01 ? O6 OKR 602 A 1 
HETATM 21 C C10 OKR . . . C 3 6.785 20.467 25.702 1 123.08 ? C10 OKR 602 A 1 
HETATM 22 C C11 OKR . . . C 3 6.825 21.694 26.578 1 153.4 ? C11 OKR 602 A 1 
HETATM 23 O O7 OKR . . . C 3 6.541 21.336 27.953 1 173.36 ? O7 OKR 602 A 1 
HETATM 24 P P2 OKR . . . C 3 6.988 22.286 29.172 1 200.54 ? P2 OKR 602 A 1 
HETATM 25 O O8 OKR . . . C 3 8.293 21.796 29.71 1 197.41 ? O8 OKR 602 A 1 
HETATM 26 O O9 OKR . . . C 3 5.851 22.415 30.131 1 206.2 ? O9 OKR 602 A 1 
HETATM 27 O O10 OKR . . . C 3 7.239 23.723 28.482 1 217.42 ? O10 OKR 602 A 1 
HETATM 28 P P3 OKR . . . C 3 8.47 24.453 27.752 1 241.64 ? P3 OKR 602 A 1 
HETATM 29 O O11 OKR . . . C 3 8.608 23.964 26.35 1 261.32 ? O11 OKR 602 A 1 
HETATM 30 O O12 OKR . . . C 3 9.65 24.382 28.665 1 306.82 ? O12 OKR 602 A 1 
HETATM 31 O O13 OKR . . . C 3 7.994 25.983 27.684 1 224.4 ? O13 OKR 602 A 1 
HETATM 32 P P4 OKR . . . C 3 8.71 27.293 27.054 1 188.55 ? P4 OKR 602 A 1 
HETATM 33 O O14 OKR . . . C 3 8.651 27.137 25.555 1 194.57 ? O14 OKR 602 A 1 
HETATM 34 O O15 OKR . . . C 3 10.123 27.251 27.581 1 193.98 ? O15 OKR 602 A 1 
HETATM 35 O O16 OKR . . . C 3 7.94 28.495 27.543 1 208.51 ? O16 OKR 602 A 1 
HETATM 36 O O17 OKR . . . C 3 6.806 20.864 24.311 1 105.25 ? O17 OKR 602 A 1 
HETATM 37 C C12 OKR . . . C 3 7.218 19.751 23.548 1 94.02 ? C12 OKR 602 A 1 
HETATM 38 N N5 OKR . . . C 3 8.205 20.18 22.566 1 84.28 ? N5 OKR 602 A 1 
HETATM 39 C C13 OKR . . . C 3 9.555 20.321 22.768 1 81.64 ? C13 OKR 602 A 1 
HETATM 40 N N6 OKR . . . C 3 10.201 20.702 21.692 1 76.69 ? N6 OKR 602 A 1 
HETATM 41 C C14 OKR . . . C 3 9.214 20.805 20.718 1 78.21 ? C14 OKR 602 A 1 
HETATM 42 C C15 OKR . . . C 3 9.318 21.17 19.352 1 74.94 ? C15 OKR 602 A 1 
HETATM 43 O O18 OKR . . . C 3 10.334 21.484 18.713 1 69.6 ? O18 OKR 602 A 1 
HETATM 44 N N7 OKR . . . C 3 8.068 21.146 18.73 1 76.94 ? N7 OKR 602 A 1 
HETATM 45 C C16 OKR . . . C 3 6.88 20.809 19.336 1 76.89 ? C16 OKR 602 A 1 
HETATM 46 N N8 OKR . . . C 3 5.783 20.842 18.568 1 77.94 ? N8 OKR 602 A 1 
HETATM 47 N N9 OKR . . . C 3 6.777 20.464 20.618 1 77.74 ? N9 OKR 602 A 1 
HETATM 48 C C17 OKR . . . C 3 7.98 20.483 21.244 1 80.86 ? C17 OKR 602 A 1 
HETATM 49 C C18 OKR . . . C 3 11.042 16.742 25.944 1 74.56 ? C18 OKR 602 A 1 
HETATM 50 O O19 OKR . . . C 3 11.859 16.627 27.103 1 73.23 ? O19 OKR 602 A 1 
HETATM 51 C C19 OKR . . . C 3 11.721 17.624 24.89 1 75.23 ? C19 OKR 602 A 1 
HETATM 52 O O20 OKR . . . C 3 12.389 18.752 25.417 1 73.79 ? O20 OKR 602 A 1 
HETATM 53 C C20 OKR . . . C 3 12.386 17.798 19.451 1 58.24 ? C20 OKR 602 A 1 
HETATM 54 O O21 OKR . . . C 3 12.937 18.137 18.389 1 60.19 ? O21 OKR 602 A 1 
HETATM 55 N N10 OKR . . . C 3 10.998 17.63 19.511 1 61.9 ? N10 OKR 602 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           55 
#