data_8SK2
#
_model_server_result.job_id            4ClgT0-4bB5o4bIhpBcc0w 
_model_server_result.datetime_utc      '2024-11-05 03:34:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sk2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    8SK2 
#
_exptl.entry_id    8SK2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.65 
_cell.angle_gamma         90 
_cell.entry_id            8SK2 
_cell.length_a            39.927 
_cell.length_b            59.312 
_cell.length_c            41.815 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SK2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 119 A HIS 120 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc2 A ND1 HIS 121 A HIS 122 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc3 A OD2 ASP 123 A ASP 124 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc4 A NE2 HIS 188 A HIS 189 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc5 A SG CYS 207 A CYS 208 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc6 A NE2 HIS 249 A HIS 250 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc7 B ZN ZN . A ZN 301 1_555 F O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? 
metalc ? metalc8 C ZN ZN . A ZN 302 1_555 F O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc9 C ZN ZN . A ZN 302 1_555 F O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc10 C ZN ZN . A ZN 302 1_555 F O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8SK2 
_atom_sites.fract_transf_matrix[1][1]    0.025046 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003808 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01686 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 301 ZN ZN . 
C 2 ZN A 1 302 302 ZN ZN . 
D 3 EDO A 1 303 303 EDO EDO . 
E 3 EDO A 1 304 304 EDO EDO . 
F 4 HOH A 1 401 143 HOH HOH . 
F 4 HOH A 2 402 13 HOH HOH . 
F 4 HOH A 3 403 198 HOH HOH . 
F 4 HOH A 4 404 130 HOH HOH . 
F 4 HOH A 5 405 85 HOH HOH . 
F 4 HOH A 6 406 213 HOH HOH . 
F 4 HOH A 7 407 132 HOH HOH . 
F 4 HOH A 8 408 82 HOH HOH . 
F 4 HOH A 9 409 166 HOH HOH . 
F 4 HOH A 10 410 196 HOH HOH . 
F 4 HOH A 11 411 179 HOH HOH . 
F 4 HOH A 12 412 214 HOH HOH . 
F 4 HOH A 13 413 7 HOH HOH . 
F 4 HOH A 14 414 65 HOH HOH . 
F 4 HOH A 15 415 202 HOH HOH . 
F 4 HOH A 16 416 61 HOH HOH . 
F 4 HOH A 17 417 50 HOH HOH . 
F 4 HOH A 18 418 145 HOH HOH . 
F 4 HOH A 19 419 137 HOH HOH . 
F 4 HOH A 20 420 200 HOH HOH . 
F 4 HOH A 21 421 101 HOH HOH . 
F 4 HOH A 22 422 100 HOH HOH . 
F 4 HOH A 23 423 99 HOH HOH . 
F 4 HOH A 24 424 41 HOH HOH . 
F 4 HOH A 25 425 78 HOH HOH . 
F 4 HOH A 26 426 42 HOH HOH . 
F 4 HOH A 27 427 75 HOH HOH . 
F 4 HOH A 28 428 158 HOH HOH . 
F 4 HOH A 29 429 47 HOH HOH . 
F 4 HOH A 30 430 92 HOH HOH . 
F 4 HOH A 31 431 6 HOH HOH . 
F 4 HOH A 32 432 87 HOH HOH . 
F 4 HOH A 33 433 79 HOH HOH . 
F 4 HOH A 34 434 144 HOH HOH . 
F 4 HOH A 35 435 21 HOH HOH . 
F 4 HOH A 36 436 28 HOH HOH . 
F 4 HOH A 37 437 24 HOH HOH . 
F 4 HOH A 38 438 204 HOH HOH . 
F 4 HOH A 39 439 150 HOH HOH . 
F 4 HOH A 40 440 181 HOH HOH . 
F 4 HOH A 41 441 188 HOH HOH . 
F 4 HOH A 42 442 22 HOH HOH . 
F 4 HOH A 43 443 48 HOH HOH . 
F 4 HOH A 44 444 20 HOH HOH . 
F 4 HOH A 45 445 152 HOH HOH . 
F 4 HOH A 46 446 4 HOH HOH . 
F 4 HOH A 47 447 83 HOH HOH . 
F 4 HOH A 48 448 38 HOH HOH . 
F 4 HOH A 49 449 69 HOH HOH . 
F 4 HOH A 50 450 122 HOH HOH . 
F 4 HOH A 51 451 91 HOH HOH . 
F 4 HOH A 52 452 174 HOH HOH . 
F 4 HOH A 53 453 149 HOH HOH . 
F 4 HOH A 54 454 135 HOH HOH . 
F 4 HOH A 55 455 57 HOH HOH . 
F 4 HOH A 56 456 97 HOH HOH . 
F 4 HOH A 57 457 80 HOH HOH . 
F 4 HOH A 58 458 54 HOH HOH . 
F 4 HOH A 59 459 210 HOH HOH . 
F 4 HOH A 60 460 23 HOH HOH . 
F 4 HOH A 61 461 34 HOH HOH . 
F 4 HOH A 62 462 52 HOH HOH . 
F 4 HOH A 63 463 127 HOH HOH . 
F 4 HOH A 64 464 206 HOH HOH . 
F 4 HOH A 65 465 8 HOH HOH . 
F 4 HOH A 66 466 53 HOH HOH . 
F 4 HOH A 67 467 123 HOH HOH . 
F 4 HOH A 68 468 225 HOH HOH . 
F 4 HOH A 69 469 115 HOH HOH . 
F 4 HOH A 70 470 134 HOH HOH . 
F 4 HOH A 71 471 51 HOH HOH . 
F 4 HOH A 72 472 46 HOH HOH . 
F 4 HOH A 73 473 156 HOH HOH . 
F 4 HOH A 74 474 183 HOH HOH . 
F 4 HOH A 75 475 58 HOH HOH . 
F 4 HOH A 76 476 5 HOH HOH . 
F 4 HOH A 77 477 12 HOH HOH . 
F 4 HOH A 78 478 64 HOH HOH . 
F 4 HOH A 79 479 18 HOH HOH . 
F 4 HOH A 80 480 3 HOH HOH . 
F 4 HOH A 81 481 191 HOH HOH . 
F 4 HOH A 82 482 77 HOH HOH . 
F 4 HOH A 83 483 40 HOH HOH . 
F 4 HOH A 84 484 55 HOH HOH . 
F 4 HOH A 85 485 119 HOH HOH . 
F 4 HOH A 86 486 138 HOH HOH . 
F 4 HOH A 87 487 151 HOH HOH . 
F 4 HOH A 88 488 172 HOH HOH . 
F 4 HOH A 89 489 62 HOH HOH . 
F 4 HOH A 90 490 147 HOH HOH . 
F 4 HOH A 91 491 32 HOH HOH . 
F 4 HOH A 92 492 177 HOH HOH . 
F 4 HOH A 93 493 222 HOH HOH . 
F 4 HOH A 94 494 128 HOH HOH . 
F 4 HOH A 95 495 146 HOH HOH . 
F 4 HOH A 96 496 15 HOH HOH . 
F 4 HOH A 97 497 139 HOH HOH . 
F 4 HOH A 98 498 70 HOH HOH . 
F 4 HOH A 99 499 182 HOH HOH . 
F 4 HOH A 100 500 184 HOH HOH . 
F 4 HOH A 101 501 49 HOH HOH . 
F 4 HOH A 102 502 93 HOH HOH . 
F 4 HOH A 103 503 56 HOH HOH . 
F 4 HOH A 104 504 25 HOH HOH . 
F 4 HOH A 105 505 74 HOH HOH . 
F 4 HOH A 106 506 76 HOH HOH . 
F 4 HOH A 107 507 68 HOH HOH . 
F 4 HOH A 108 508 14 HOH HOH . 
F 4 HOH A 109 509 136 HOH HOH . 
F 4 HOH A 110 510 109 HOH HOH . 
F 4 HOH A 111 511 153 HOH HOH . 
F 4 HOH A 112 512 116 HOH HOH . 
F 4 HOH A 113 513 190 HOH HOH . 
F 4 HOH A 114 514 197 HOH HOH . 
F 4 HOH A 115 515 90 HOH HOH . 
F 4 HOH A 116 516 45 HOH HOH . 
F 4 HOH A 117 517 209 HOH HOH . 
F 4 HOH A 118 518 117 HOH HOH . 
F 4 HOH A 119 519 133 HOH HOH . 
F 4 HOH A 120 520 63 HOH HOH . 
F 4 HOH A 121 521 89 HOH HOH . 
F 4 HOH A 122 522 199 HOH HOH . 
F 4 HOH A 123 523 1 HOH HOH . 
F 4 HOH A 124 524 9 HOH HOH . 
F 4 HOH A 125 525 10 HOH HOH . 
F 4 HOH A 126 526 11 HOH HOH . 
F 4 HOH A 127 527 160 HOH HOH . 
F 4 HOH A 128 528 114 HOH HOH . 
F 4 HOH A 129 529 159 HOH HOH . 
F 4 HOH A 130 530 27 HOH HOH . 
F 4 HOH A 131 531 124 HOH HOH . 
F 4 HOH A 132 532 157 HOH HOH . 
F 4 HOH A 133 533 86 HOH HOH . 
F 4 HOH A 134 534 192 HOH HOH . 
F 4 HOH A 135 535 120 HOH HOH . 
F 4 HOH A 136 536 39 HOH HOH . 
F 4 HOH A 137 537 59 HOH HOH . 
F 4 HOH A 138 538 163 HOH HOH . 
F 4 HOH A 139 539 186 HOH HOH . 
F 4 HOH A 140 540 95 HOH HOH . 
F 4 HOH A 141 541 203 HOH HOH . 
F 4 HOH A 142 542 31 HOH HOH . 
F 4 HOH A 143 543 73 HOH HOH . 
F 4 HOH A 144 544 140 HOH HOH . 
F 4 HOH A 145 545 67 HOH HOH . 
F 4 HOH A 146 546 88 HOH HOH . 
F 4 HOH A 147 547 84 HOH HOH . 
F 4 HOH A 148 548 201 HOH HOH . 
F 4 HOH A 149 549 19 HOH HOH . 
F 4 HOH A 150 550 228 HOH HOH . 
F 4 HOH A 151 551 126 HOH HOH . 
F 4 HOH A 152 552 154 HOH HOH . 
F 4 HOH A 153 553 107 HOH HOH . 
F 4 HOH A 154 554 175 HOH HOH . 
F 4 HOH A 155 555 111 HOH HOH . 
F 4 HOH A 156 556 193 HOH HOH . 
F 4 HOH A 157 557 167 HOH HOH . 
F 4 HOH A 158 558 142 HOH HOH . 
F 4 HOH A 159 559 60 HOH HOH . 
F 4 HOH A 160 560 170 HOH HOH . 
F 4 HOH A 161 561 102 HOH HOH . 
F 4 HOH A 162 562 113 HOH HOH . 
F 4 HOH A 163 563 187 HOH HOH . 
F 4 HOH A 164 564 125 HOH HOH . 
F 4 HOH A 165 565 98 HOH HOH . 
F 4 HOH A 166 566 211 HOH HOH . 
F 4 HOH A 167 567 112 HOH HOH . 
F 4 HOH A 168 568 66 HOH HOH . 
F 4 HOH A 169 569 194 HOH HOH . 
F 4 HOH A 170 570 212 HOH HOH . 
F 4 HOH A 171 571 216 HOH HOH . 
F 4 HOH A 172 572 81 HOH HOH . 
F 4 HOH A 173 573 94 HOH HOH . 
F 4 HOH A 174 574 71 HOH HOH . 
F 4 HOH A 175 575 207 HOH HOH . 
F 4 HOH A 176 576 195 HOH HOH . 
F 4 HOH A 177 577 221 HOH HOH . 
F 4 HOH A 178 578 220 HOH HOH . 
F 4 HOH A 179 579 185 HOH HOH . 
F 4 HOH A 180 580 189 HOH HOH . 
F 4 HOH A 181 581 72 HOH HOH . 
F 4 HOH A 182 582 129 HOH HOH . 
F 4 HOH A 183 583 229 HOH HOH . 
F 4 HOH A 184 584 16 HOH HOH . 
F 4 HOH A 185 585 215 HOH HOH . 
F 4 HOH A 186 586 227 HOH HOH . 
F 4 HOH A 187 587 33 HOH HOH . 
F 4 HOH A 188 588 217 HOH HOH . 
F 4 HOH A 189 589 26 HOH HOH . 
F 4 HOH A 190 590 105 HOH HOH . 
F 4 HOH A 191 591 155 HOH HOH . 
F 4 HOH A 192 592 108 HOH HOH . 
F 4 HOH A 193 593 118 HOH HOH . 
F 4 HOH A 194 594 165 HOH HOH . 
F 4 HOH A 195 595 224 HOH HOH . 
F 4 HOH A 196 596 106 HOH HOH . 
F 4 HOH A 197 597 226 HOH HOH . 
F 4 HOH A 198 598 110 HOH HOH . 
F 4 HOH A 199 599 17 HOH HOH . 
F 4 HOH A 200 600 171 HOH HOH . 
F 4 HOH A 201 601 103 HOH HOH . 
F 4 HOH A 202 602 219 HOH HOH . 
F 4 HOH A 203 603 131 HOH HOH . 
F 4 HOH A 204 604 43 HOH HOH . 
F 4 HOH A 205 605 121 HOH HOH . 
F 4 HOH A 206 606 178 HOH HOH . 
F 4 HOH A 207 607 205 HOH HOH . 
F 4 HOH A 208 608 180 HOH HOH . 
F 4 HOH A 209 609 208 HOH HOH . 
F 4 HOH A 210 610 96 HOH HOH . 
F 4 HOH A 211 611 35 HOH HOH . 
F 4 HOH A 212 612 168 HOH HOH . 
F 4 HOH A 213 613 161 HOH HOH . 
F 4 HOH A 214 614 148 HOH HOH . 
F 4 HOH A 215 615 104 HOH HOH . 
F 4 HOH A 216 616 36 HOH HOH . 
F 4 HOH A 217 617 223 HOH HOH . 
F 4 HOH A 218 618 162 HOH HOH . 
F 4 HOH A 219 619 218 HOH HOH . 
F 4 HOH A 220 620 37 HOH HOH . 
F 4 HOH A 221 621 176 HOH HOH . 
F 4 HOH A 222 622 169 HOH HOH . 
F 4 HOH A 223 623 44 HOH HOH . 
F 4 HOH A 224 624 173 HOH HOH . 
F 4 HOH A 225 625 230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -7.026 38.635 3.25 1 19.51 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . D 3 -5.939 39.549 2.991 1 17.65 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . D 3 -7.8 38.911 4.498 1 17.99 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . D 3 -7.045 38.81 5.72 1 15.14 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#