data_8SKL
#
_model_server_result.job_id            ZC5twOAlmzINNlTDyD1czQ 
_model_server_result.datetime_utc      '2024-11-07 22:35:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8skl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    8SKL 
#
_exptl.entry_id    8SKL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8SKL 
_cell.length_a            87.961 
_cell.length_b            87.961 
_cell.length_c            104.345 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SKL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 5 A GLU 4 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc2 D NA NA . A NA 403 1_555 G O1 EDO . A EDO 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
metalc ? metalc3 D NA NA . A NA 403 1_555 J O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8SKL 
_atom_sites.fract_transf_matrix[1][1]    0.011369 
_atom_sites.fract_transf_matrix[1][2]    0.006564 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 401 1 CL CL . 
C 2 CL A 1 402 2 CL CL . 
D 3 NA A 1 403 2 NA NA . 
E 4 V2O A 1 404 305 V2O 182 . 
F 5 EDO A 1 405 301 EDO EDO . 
G 5 EDO A 1 406 306 EDO EDO . 
H 5 EDO A 1 407 307 EDO EDO . 
I 5 EDO A 1 408 308 EDO EDO . 
J 6 HOH A 1 501 84 HOH HOH . 
J 6 HOH A 2 502 329 HOH HOH . 
J 6 HOH A 3 503 110 HOH HOH . 
J 6 HOH A 4 504 326 HOH HOH . 
J 6 HOH A 5 505 105 HOH HOH . 
J 6 HOH A 6 506 87 HOH HOH . 
J 6 HOH A 7 507 99 HOH HOH . 
J 6 HOH A 8 508 311 HOH HOH . 
J 6 HOH A 9 509 198 HOH HOH . 
J 6 HOH A 10 510 46 HOH HOH . 
J 6 HOH A 11 511 93 HOH HOH . 
J 6 HOH A 12 512 79 HOH HOH . 
J 6 HOH A 13 513 163 HOH HOH . 
J 6 HOH A 14 514 328 HOH HOH . 
J 6 HOH A 15 515 125 HOH HOH . 
J 6 HOH A 16 516 21 HOH HOH . 
J 6 HOH A 17 517 270 HOH HOH . 
J 6 HOH A 18 518 86 HOH HOH . 
J 6 HOH A 19 519 41 HOH HOH . 
J 6 HOH A 20 520 49 HOH HOH . 
J 6 HOH A 21 521 221 HOH HOH . 
J 6 HOH A 22 522 158 HOH HOH . 
J 6 HOH A 23 523 316 HOH HOH . 
J 6 HOH A 24 524 108 HOH HOH . 
J 6 HOH A 25 525 3 HOH HOH . 
J 6 HOH A 26 526 58 HOH HOH . 
J 6 HOH A 27 527 22 HOH HOH . 
J 6 HOH A 28 528 307 HOH HOH . 
J 6 HOH A 29 529 29 HOH HOH . 
J 6 HOH A 30 530 167 HOH HOH . 
J 6 HOH A 31 531 292 HOH HOH . 
J 6 HOH A 32 532 53 HOH HOH . 
J 6 HOH A 33 533 216 HOH HOH . 
J 6 HOH A 34 534 345 HOH HOH . 
J 6 HOH A 35 535 11 HOH HOH . 
J 6 HOH A 36 536 62 HOH HOH . 
J 6 HOH A 37 537 320 HOH HOH . 
J 6 HOH A 38 538 335 HOH HOH . 
J 6 HOH A 39 539 17 HOH HOH . 
J 6 HOH A 40 540 10 HOH HOH . 
J 6 HOH A 41 541 337 HOH HOH . 
J 6 HOH A 42 542 317 HOH HOH . 
J 6 HOH A 43 543 111 HOH HOH . 
J 6 HOH A 44 544 346 HOH HOH . 
J 6 HOH A 45 545 51 HOH HOH . 
J 6 HOH A 46 546 27 HOH HOH . 
J 6 HOH A 47 547 159 HOH HOH . 
J 6 HOH A 48 548 203 HOH HOH . 
J 6 HOH A 49 549 9 HOH HOH . 
J 6 HOH A 50 550 287 HOH HOH . 
J 6 HOH A 51 551 102 HOH HOH . 
J 6 HOH A 52 552 278 HOH HOH . 
J 6 HOH A 53 553 169 HOH HOH . 
J 6 HOH A 54 554 2 HOH HOH . 
J 6 HOH A 55 555 231 HOH HOH . 
J 6 HOH A 56 556 57 HOH HOH . 
J 6 HOH A 57 557 168 HOH HOH . 
J 6 HOH A 58 558 34 HOH HOH . 
J 6 HOH A 59 559 18 HOH HOH . 
J 6 HOH A 60 560 91 HOH HOH . 
J 6 HOH A 61 561 52 HOH HOH . 
J 6 HOH A 62 562 4 HOH HOH . 
J 6 HOH A 63 563 47 HOH HOH . 
J 6 HOH A 64 564 138 HOH HOH . 
J 6 HOH A 65 565 28 HOH HOH . 
J 6 HOH A 66 566 33 HOH HOH . 
J 6 HOH A 67 567 162 HOH HOH . 
J 6 HOH A 68 568 43 HOH HOH . 
J 6 HOH A 69 569 55 HOH HOH . 
J 6 HOH A 70 570 31 HOH HOH . 
J 6 HOH A 71 571 126 HOH HOH . 
J 6 HOH A 72 572 25 HOH HOH . 
J 6 HOH A 73 573 353 HOH HOH . 
J 6 HOH A 74 574 97 HOH HOH . 
J 6 HOH A 75 575 277 HOH HOH . 
J 6 HOH A 76 576 319 HOH HOH . 
J 6 HOH A 77 577 120 HOH HOH . 
J 6 HOH A 78 578 180 HOH HOH . 
J 6 HOH A 79 579 225 HOH HOH . 
J 6 HOH A 80 580 147 HOH HOH . 
J 6 HOH A 81 581 347 HOH HOH . 
J 6 HOH A 82 582 73 HOH HOH . 
J 6 HOH A 83 583 30 HOH HOH . 
J 6 HOH A 84 584 37 HOH HOH . 
J 6 HOH A 85 585 12 HOH HOH . 
J 6 HOH A 86 586 8 HOH HOH . 
J 6 HOH A 87 587 165 HOH HOH . 
J 6 HOH A 88 588 24 HOH HOH . 
J 6 HOH A 89 589 42 HOH HOH . 
J 6 HOH A 90 590 5 HOH HOH . 
J 6 HOH A 91 591 227 HOH HOH . 
J 6 HOH A 92 592 76 HOH HOH . 
J 6 HOH A 93 593 356 HOH HOH . 
J 6 HOH A 94 594 107 HOH HOH . 
J 6 HOH A 95 595 15 HOH HOH . 
J 6 HOH A 96 596 181 HOH HOH . 
J 6 HOH A 97 597 6 HOH HOH . 
J 6 HOH A 98 598 321 HOH HOH . 
J 6 HOH A 99 599 61 HOH HOH . 
J 6 HOH A 100 600 339 HOH HOH . 
J 6 HOH A 101 601 186 HOH HOH . 
J 6 HOH A 102 602 338 HOH HOH . 
J 6 HOH A 103 603 226 HOH HOH . 
J 6 HOH A 104 604 121 HOH HOH . 
J 6 HOH A 105 605 104 HOH HOH . 
J 6 HOH A 106 606 349 HOH HOH . 
J 6 HOH A 107 607 45 HOH HOH . 
J 6 HOH A 108 608 35 HOH HOH . 
J 6 HOH A 109 609 343 HOH HOH . 
J 6 HOH A 110 610 75 HOH HOH . 
J 6 HOH A 111 611 144 HOH HOH . 
J 6 HOH A 112 612 14 HOH HOH . 
J 6 HOH A 113 613 136 HOH HOH . 
J 6 HOH A 114 614 143 HOH HOH . 
J 6 HOH A 115 615 106 HOH HOH . 
J 6 HOH A 116 616 208 HOH HOH . 
J 6 HOH A 117 617 336 HOH HOH . 
J 6 HOH A 118 618 324 HOH HOH . 
J 6 HOH A 119 619 20 HOH HOH . 
J 6 HOH A 120 620 190 HOH HOH . 
J 6 HOH A 121 621 327 HOH HOH . 
J 6 HOH A 122 622 23 HOH HOH . 
J 6 HOH A 123 623 322 HOH HOH . 
J 6 HOH A 124 624 82 HOH HOH . 
J 6 HOH A 125 625 302 HOH HOH . 
J 6 HOH A 126 626 40 HOH HOH . 
J 6 HOH A 127 627 13 HOH HOH . 
J 6 HOH A 128 628 341 HOH HOH . 
J 6 HOH A 129 629 334 HOH HOH . 
J 6 HOH A 130 630 170 HOH HOH . 
J 6 HOH A 131 631 19 HOH HOH . 
J 6 HOH A 132 632 26 HOH HOH . 
J 6 HOH A 133 633 96 HOH HOH . 
J 6 HOH A 134 634 173 HOH HOH . 
J 6 HOH A 135 635 330 HOH HOH . 
J 6 HOH A 136 636 16 HOH HOH . 
J 6 HOH A 137 637 1 HOH HOH . 
J 6 HOH A 138 638 94 HOH HOH . 
J 6 HOH A 139 639 135 HOH HOH . 
J 6 HOH A 140 640 88 HOH HOH . 
J 6 HOH A 141 641 38 HOH HOH . 
J 6 HOH A 142 642 252 HOH HOH . 
J 6 HOH A 143 643 131 HOH HOH . 
J 6 HOH A 144 644 269 HOH HOH . 
J 6 HOH A 145 645 266 HOH HOH . 
J 6 HOH A 146 646 325 HOH HOH . 
J 6 HOH A 147 647 124 HOH HOH . 
J 6 HOH A 148 648 222 HOH HOH . 
J 6 HOH A 149 649 313 HOH HOH . 
J 6 HOH A 150 650 283 HOH HOH . 
J 6 HOH A 151 651 92 HOH HOH . 
J 6 HOH A 152 652 89 HOH HOH . 
J 6 HOH A 153 653 78 HOH HOH . 
J 6 HOH A 154 654 7 HOH HOH . 
J 6 HOH A 155 655 192 HOH HOH . 
J 6 HOH A 156 656 232 HOH HOH . 
J 6 HOH A 157 657 44 HOH HOH . 
J 6 HOH A 158 658 141 HOH HOH . 
J 6 HOH A 159 659 56 HOH HOH . 
J 6 HOH A 160 660 153 HOH HOH . 
J 6 HOH A 161 661 152 HOH HOH . 
J 6 HOH A 162 662 175 HOH HOH . 
J 6 HOH A 163 663 100 HOH HOH . 
J 6 HOH A 164 664 114 HOH HOH . 
J 6 HOH A 165 665 48 HOH HOH . 
J 6 HOH A 166 666 182 HOH HOH . 
J 6 HOH A 167 667 36 HOH HOH . 
J 6 HOH A 168 668 355 HOH HOH . 
J 6 HOH A 169 669 101 HOH HOH . 
J 6 HOH A 170 670 77 HOH HOH . 
J 6 HOH A 171 671 211 HOH HOH . 
J 6 HOH A 172 672 139 HOH HOH . 
J 6 HOH A 173 673 161 HOH HOH . 
J 6 HOH A 174 674 148 HOH HOH . 
J 6 HOH A 175 675 332 HOH HOH . 
J 6 HOH A 176 676 50 HOH HOH . 
J 6 HOH A 177 677 60 HOH HOH . 
J 6 HOH A 178 678 289 HOH HOH . 
J 6 HOH A 179 679 69 HOH HOH . 
J 6 HOH A 180 680 354 HOH HOH . 
J 6 HOH A 181 681 59 HOH HOH . 
J 6 HOH A 182 682 116 HOH HOH . 
J 6 HOH A 183 683 199 HOH HOH . 
J 6 HOH A 184 684 271 HOH HOH . 
J 6 HOH A 185 685 127 HOH HOH . 
J 6 HOH A 186 686 209 HOH HOH . 
J 6 HOH A 187 687 290 HOH HOH . 
J 6 HOH A 188 688 296 HOH HOH . 
J 6 HOH A 189 689 205 HOH HOH . 
J 6 HOH A 190 690 115 HOH HOH . 
J 6 HOH A 191 691 258 HOH HOH . 
J 6 HOH A 192 692 344 HOH HOH . 
J 6 HOH A 193 693 352 HOH HOH . 
J 6 HOH A 194 694 323 HOH HOH . 
J 6 HOH A 195 695 333 HOH HOH . 
J 6 HOH A 196 696 134 HOH HOH . 
J 6 HOH A 197 697 171 HOH HOH . 
J 6 HOH A 198 698 218 HOH HOH . 
J 6 HOH A 199 699 137 HOH HOH . 
J 6 HOH A 200 700 297 HOH HOH . 
J 6 HOH A 201 701 157 HOH HOH . 
J 6 HOH A 202 702 255 HOH HOH . 
J 6 HOH A 203 703 140 HOH HOH . 
J 6 HOH A 204 704 357 HOH HOH . 
J 6 HOH A 205 705 224 HOH HOH . 
J 6 HOH A 206 706 340 HOH HOH . 
J 6 HOH A 207 707 113 HOH HOH . 
J 6 HOH A 208 708 331 HOH HOH . 
J 6 HOH A 209 709 130 HOH HOH . 
J 6 HOH A 210 710 156 HOH HOH . 
J 6 HOH A 211 711 350 HOH HOH . 
J 6 HOH A 212 712 74 HOH HOH . 
J 6 HOH A 213 713 282 HOH HOH . 
J 6 HOH A 214 714 146 HOH HOH . 
J 6 HOH A 215 715 351 HOH HOH . 
J 6 HOH A 216 716 201 HOH HOH . 
J 6 HOH A 217 717 103 HOH HOH . 
J 6 HOH A 218 718 259 HOH HOH . 
J 6 HOH A 219 719 112 HOH HOH . 
J 6 HOH A 220 720 236 HOH HOH . 
J 6 HOH A 221 721 174 HOH HOH . 
J 6 HOH A 222 722 197 HOH HOH . 
J 6 HOH A 223 723 342 HOH HOH . 
J 6 HOH A 224 724 306 HOH HOH . 
J 6 HOH A 225 725 122 HOH HOH . 
J 6 HOH A 226 726 219 HOH HOH . 
J 6 HOH A 227 727 166 HOH HOH . 
J 6 HOH A 228 728 286 HOH HOH . 
J 6 HOH A 229 729 117 HOH HOH . 
J 6 HOH A 230 730 109 HOH HOH . 
J 6 HOH A 231 731 348 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 5 -52.17 29.116 -10.012 1 36.45 ? C1 EDO 405 A 1 
HETATM 2 O O1 EDO . . . F 5 -51.873 30.402 -10.574 1 30.99 ? O1 EDO 405 A 1 
HETATM 3 C C2 EDO . . . F 5 -53.668 28.796 -10.038 1 32.11 ? C2 EDO 405 A 1 
HETATM 4 O O2 EDO . . . F 5 -54.237 29.137 -11.304 1 31.63 ? O2 EDO 405 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#