data_8SKP # _model_server_result.job_id jruN9ZLzmWpXXbGJhR_LCg _model_server_result.datetime_utc '2024-11-25 07:21:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8skp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8SKP # _exptl.entry_id 8SKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 171.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-hydroxy-6-sulfanylidene-1,6-dihydropyridine-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.5 _cell.angle_gamma 90 _cell.entry_id 8SKP _cell.length_a 40.138 _cell.length_b 59.185 _cell.length_c 42.266 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 80 A HIS 120 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A ND1 HIS 82 A HIS 122 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 A OD2 ASP 84 A ASP 124 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 A NE2 HIS 149 A HIS 189 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc5 A SG CYS 168 A CYS 208 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc6 A NE2 HIS 210 A HIS 250 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 F O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc8 C ZN ZN . A ZN 302 1_555 D S WAF . A WAF 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc9 C ZN ZN . A ZN 302 1_555 D O1 WAF . A WAF 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc10 C ZN ZN . A ZN 302 1_555 F O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C6 H5 N O3 S' _chem_comp.formula_weight 171.174 _chem_comp.id WAF _chem_comp.mon_nstd_flag . _chem_comp.name '1-hydroxy-6-sulfanylidene-1,6-dihydropyridine-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C1 WAF doub 385 n n C1 C2 WAF sing 386 n n C1 N6 WAF sing 387 n n C2 C3 WAF doub 388 n n N6 O1 WAF sing 389 n n N6 C5 WAF sing 390 n n C3 C4 WAF sing 391 n n C5 C4 WAF doub 392 n n C5 C7 WAF sing 393 n n C7 O3 WAF doub 394 n n C7 O2 WAF sing 395 n n C2 H2 WAF sing 396 n n C4 H4 WAF sing 397 n n O2 H5 WAF sing 398 n n O1 H1 WAF sing 399 n n C3 H3 WAF sing 400 n n # _atom_sites.entry_id 8SKP _atom_sites.fract_transf_matrix[1][1] 0.024914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003724 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 WAF A 1 303 401 WAF CP1 . E 4 EDO A 1 304 1 EDO EDO . F 5 HOH A 1 401 238 HOH HOH . F 5 HOH A 2 402 46 HOH HOH . F 5 HOH A 3 403 187 HOH HOH . F 5 HOH A 4 404 101 HOH HOH . F 5 HOH A 5 405 235 HOH HOH . F 5 HOH A 6 406 236 HOH HOH . F 5 HOH A 7 407 171 HOH HOH . F 5 HOH A 8 408 77 HOH HOH . F 5 HOH A 9 409 198 HOH HOH . F 5 HOH A 10 410 113 HOH HOH . F 5 HOH A 11 411 200 HOH HOH . F 5 HOH A 12 412 145 HOH HOH . F 5 HOH A 13 413 109 HOH HOH . F 5 HOH A 14 414 124 HOH HOH . F 5 HOH A 15 415 221 HOH HOH . F 5 HOH A 16 416 193 HOH HOH . F 5 HOH A 17 417 12 HOH HOH . F 5 HOH A 18 418 140 HOH HOH . F 5 HOH A 19 419 43 HOH HOH . F 5 HOH A 20 420 174 HOH HOH . F 5 HOH A 21 421 92 HOH HOH . F 5 HOH A 22 422 168 HOH HOH . F 5 HOH A 23 423 179 HOH HOH . F 5 HOH A 24 424 147 HOH HOH . F 5 HOH A 25 425 27 HOH HOH . F 5 HOH A 26 426 137 HOH HOH . F 5 HOH A 27 427 13 HOH HOH . F 5 HOH A 28 428 178 HOH HOH . F 5 HOH A 29 429 188 HOH HOH . F 5 HOH A 30 430 103 HOH HOH . F 5 HOH A 31 431 127 HOH HOH . F 5 HOH A 32 432 4 HOH HOH . F 5 HOH A 33 433 30 HOH HOH . F 5 HOH A 34 434 106 HOH HOH . F 5 HOH A 35 435 3 HOH HOH . F 5 HOH A 36 436 120 HOH HOH . F 5 HOH A 37 437 150 HOH HOH . F 5 HOH A 38 438 111 HOH HOH . F 5 HOH A 39 439 199 HOH HOH . F 5 HOH A 40 440 184 HOH HOH . F 5 HOH A 41 441 180 HOH HOH . F 5 HOH A 42 442 40 HOH HOH . F 5 HOH A 43 443 192 HOH HOH . F 5 HOH A 44 444 191 HOH HOH . F 5 HOH A 45 445 125 HOH HOH . F 5 HOH A 46 446 123 HOH HOH . F 5 HOH A 47 447 81 HOH HOH . F 5 HOH A 48 448 93 HOH HOH . F 5 HOH A 49 449 5 HOH HOH . F 5 HOH A 50 450 62 HOH HOH . F 5 HOH A 51 451 139 HOH HOH . F 5 HOH A 52 452 65 HOH HOH . F 5 HOH A 53 453 53 HOH HOH . F 5 HOH A 54 454 230 HOH HOH . F 5 HOH A 55 455 78 HOH HOH . F 5 HOH A 56 456 210 HOH HOH . F 5 HOH A 57 457 75 HOH HOH . F 5 HOH A 58 458 87 HOH HOH . F 5 HOH A 59 459 64 HOH HOH . F 5 HOH A 60 460 41 HOH HOH . F 5 HOH A 61 461 26 HOH HOH . F 5 HOH A 62 462 121 HOH HOH . F 5 HOH A 63 463 86 HOH HOH . F 5 HOH A 64 464 47 HOH HOH . F 5 HOH A 65 465 44 HOH HOH . F 5 HOH A 66 466 133 HOH HOH . F 5 HOH A 67 467 141 HOH HOH . F 5 HOH A 68 468 49 HOH HOH . F 5 HOH A 69 469 136 HOH HOH . F 5 HOH A 70 470 9 HOH HOH . F 5 HOH A 71 471 85 HOH HOH . F 5 HOH A 72 472 50 HOH HOH . F 5 HOH A 73 473 31 HOH HOH . F 5 HOH A 74 474 23 HOH HOH . F 5 HOH A 75 475 15 HOH HOH . F 5 HOH A 76 476 99 HOH HOH . F 5 HOH A 77 477 70 HOH HOH . F 5 HOH A 78 478 229 HOH HOH . F 5 HOH A 79 479 59 HOH HOH . F 5 HOH A 80 480 181 HOH HOH . F 5 HOH A 81 481 79 HOH HOH . F 5 HOH A 82 482 69 HOH HOH . F 5 HOH A 83 483 89 HOH HOH . F 5 HOH A 84 484 1 HOH HOH . F 5 HOH A 85 485 16 HOH HOH . F 5 HOH A 86 486 39 HOH HOH . F 5 HOH A 87 487 7 HOH HOH . F 5 HOH A 88 488 22 HOH HOH . F 5 HOH A 89 489 52 HOH HOH . F 5 HOH A 90 490 17 HOH HOH . F 5 HOH A 91 491 67 HOH HOH . F 5 HOH A 92 492 138 HOH HOH . F 5 HOH A 93 493 186 HOH HOH . F 5 HOH A 94 494 158 HOH HOH . F 5 HOH A 95 495 48 HOH HOH . F 5 HOH A 96 496 159 HOH HOH . F 5 HOH A 97 497 42 HOH HOH . F 5 HOH A 98 498 100 HOH HOH . F 5 HOH A 99 499 24 HOH HOH . F 5 HOH A 100 500 104 HOH HOH . F 5 HOH A 101 501 57 HOH HOH . F 5 HOH A 102 502 61 HOH HOH . F 5 HOH A 103 503 233 HOH HOH . F 5 HOH A 104 504 11 HOH HOH . F 5 HOH A 105 505 83 HOH HOH . F 5 HOH A 106 506 135 HOH HOH . F 5 HOH A 107 507 204 HOH HOH . F 5 HOH A 108 508 56 HOH HOH . F 5 HOH A 109 509 84 HOH HOH . F 5 HOH A 110 510 220 HOH HOH . F 5 HOH A 111 511 82 HOH HOH . F 5 HOH A 112 512 2 HOH HOH . F 5 HOH A 113 513 54 HOH HOH . F 5 HOH A 114 514 166 HOH HOH . F 5 HOH A 115 515 8 HOH HOH . F 5 HOH A 116 516 29 HOH HOH . F 5 HOH A 117 517 206 HOH HOH . F 5 HOH A 118 518 110 HOH HOH . F 5 HOH A 119 519 132 HOH HOH . F 5 HOH A 120 520 60 HOH HOH . F 5 HOH A 121 521 14 HOH HOH . F 5 HOH A 122 522 119 HOH HOH . F 5 HOH A 123 523 25 HOH HOH . F 5 HOH A 124 524 126 HOH HOH . F 5 HOH A 125 525 74 HOH HOH . F 5 HOH A 126 526 20 HOH HOH . F 5 HOH A 127 527 115 HOH HOH . F 5 HOH A 128 528 154 HOH HOH . F 5 HOH A 129 529 118 HOH HOH . F 5 HOH A 130 530 201 HOH HOH . F 5 HOH A 131 531 183 HOH HOH . F 5 HOH A 132 532 197 HOH HOH . F 5 HOH A 133 533 177 HOH HOH . F 5 HOH A 134 534 117 HOH HOH . F 5 HOH A 135 535 153 HOH HOH . F 5 HOH A 136 536 131 HOH HOH . F 5 HOH A 137 537 167 HOH HOH . F 5 HOH A 138 538 6 HOH HOH . F 5 HOH A 139 539 51 HOH HOH . F 5 HOH A 140 540 232 HOH HOH . F 5 HOH A 141 541 122 HOH HOH . F 5 HOH A 142 542 38 HOH HOH . F 5 HOH A 143 543 19 HOH HOH . F 5 HOH A 144 544 234 HOH HOH . F 5 HOH A 145 545 88 HOH HOH . F 5 HOH A 146 546 97 HOH HOH . F 5 HOH A 147 547 130 HOH HOH . F 5 HOH A 148 548 218 HOH HOH . F 5 HOH A 149 549 223 HOH HOH . F 5 HOH A 150 550 21 HOH HOH . F 5 HOH A 151 551 107 HOH HOH . F 5 HOH A 152 552 196 HOH HOH . F 5 HOH A 153 553 71 HOH HOH . F 5 HOH A 154 554 112 HOH HOH . F 5 HOH A 155 555 45 HOH HOH . F 5 HOH A 156 556 231 HOH HOH . F 5 HOH A 157 557 72 HOH HOH . F 5 HOH A 158 558 68 HOH HOH . F 5 HOH A 159 559 94 HOH HOH . F 5 HOH A 160 560 155 HOH HOH . F 5 HOH A 161 561 152 HOH HOH . F 5 HOH A 162 562 211 HOH HOH . F 5 HOH A 163 563 10 HOH HOH . F 5 HOH A 164 564 225 HOH HOH . F 5 HOH A 165 565 190 HOH HOH . F 5 HOH A 166 566 226 HOH HOH . F 5 HOH A 167 567 116 HOH HOH . F 5 HOH A 168 568 162 HOH HOH . F 5 HOH A 169 569 173 HOH HOH . F 5 HOH A 170 570 222 HOH HOH . F 5 HOH A 171 571 214 HOH HOH . F 5 HOH A 172 572 157 HOH HOH . F 5 HOH A 173 573 146 HOH HOH . F 5 HOH A 174 574 172 HOH HOH . F 5 HOH A 175 575 209 HOH HOH . F 5 HOH A 176 576 207 HOH HOH . F 5 HOH A 177 577 80 HOH HOH . F 5 HOH A 178 578 66 HOH HOH . F 5 HOH A 179 579 203 HOH HOH . F 5 HOH A 180 580 189 HOH HOH . F 5 HOH A 181 581 170 HOH HOH . F 5 HOH A 182 582 90 HOH HOH . F 5 HOH A 183 583 144 HOH HOH . F 5 HOH A 184 584 195 HOH HOH . F 5 HOH A 185 585 98 HOH HOH . F 5 HOH A 186 586 73 HOH HOH . F 5 HOH A 187 587 208 HOH HOH . F 5 HOH A 188 588 165 HOH HOH . F 5 HOH A 189 589 202 HOH HOH . F 5 HOH A 190 590 237 HOH HOH . F 5 HOH A 191 591 219 HOH HOH . F 5 HOH A 192 592 105 HOH HOH . F 5 HOH A 193 593 91 HOH HOH . F 5 HOH A 194 594 34 HOH HOH . F 5 HOH A 195 595 182 HOH HOH . F 5 HOH A 196 596 224 HOH HOH . F 5 HOH A 197 597 95 HOH HOH . F 5 HOH A 198 598 63 HOH HOH . F 5 HOH A 199 599 228 HOH HOH . F 5 HOH A 200 600 129 HOH HOH . F 5 HOH A 201 601 216 HOH HOH . F 5 HOH A 202 602 227 HOH HOH . F 5 HOH A 203 603 18 HOH HOH . F 5 HOH A 204 604 96 HOH HOH . F 5 HOH A 205 605 102 HOH HOH . F 5 HOH A 206 606 143 HOH HOH . F 5 HOH A 207 607 205 HOH HOH . F 5 HOH A 208 608 149 HOH HOH . F 5 HOH A 209 609 215 HOH HOH . F 5 HOH A 210 610 194 HOH HOH . F 5 HOH A 211 611 164 HOH HOH . F 5 HOH A 212 612 58 HOH HOH . F 5 HOH A 213 613 160 HOH HOH . F 5 HOH A 214 614 142 HOH HOH . F 5 HOH A 215 615 185 HOH HOH . F 5 HOH A 216 616 175 HOH HOH . F 5 HOH A 217 617 163 HOH HOH . F 5 HOH A 218 618 114 HOH HOH . F 5 HOH A 219 619 213 HOH HOH . F 5 HOH A 220 620 134 HOH HOH . F 5 HOH A 221 621 37 HOH HOH . F 5 HOH A 222 622 161 HOH HOH . F 5 HOH A 223 623 32 HOH HOH . F 5 HOH A 224 624 148 HOH HOH . F 5 HOH A 225 625 33 HOH HOH . F 5 HOH A 226 626 128 HOH HOH . F 5 HOH A 227 627 212 HOH HOH . F 5 HOH A 228 628 151 HOH HOH . F 5 HOH A 229 629 55 HOH HOH . F 5 HOH A 230 630 156 HOH HOH . F 5 HOH A 231 631 35 HOH HOH . F 5 HOH A 232 632 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 WAF . . . D 3 13.149 25.761 7.895 1 23.75 ? C2 WAF 303 A 1 HETATM 2 C C4 WAF . . . D 3 13.216 25.855 10.305 1 25.43 ? C4 WAF 303 A 1 HETATM 3 C C5 WAF . . . D 3 13.951 27.029 10.247 1 23.82 ? C5 WAF 303 A 1 HETATM 4 O O2 WAF . . . D 3 13.491 27.973 12.359 1 25.38 ? O2 WAF 303 A 1 HETATM 5 S S WAF . . . D 3 14.264 27.544 6.397 1 21.24 ? S WAF 303 A 1 HETATM 6 C C1 WAF . . . D 3 13.883 26.936 7.819 1 22.81 ? C1 WAF 303 A 1 HETATM 7 N N6 WAF . . . D 3 14.293 27.582 9.001 1 21.53 ? N6 WAF 303 A 1 HETATM 8 O O1 WAF . . . D 3 15.047 28.796 8.938 1 18.96 ? O1 WAF 303 A 1 HETATM 9 C C3 WAF . . . D 3 12.818 25.224 9.133 1 24.58 ? C3 WAF 303 A 1 HETATM 10 C C7 WAF . . . D 3 14.37 27.703 11.515 1 22.4 ? C7 WAF 303 A 1 HETATM 11 O O3 WAF . . . D 3 15.575 27.971 11.7 1 23.85 ? O3 WAF 303 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #