data_8SNH # _model_server_result.job_id v8RjkyGqqN9NRH_3dTGSVQ _model_server_result.datetime_utc '2024-10-20 20:38:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8snh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":201}' # _entry.id 8SNH # _exptl.entry_id 8SNH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 175.82 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SNH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 S N N ? 12 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 141 J CYS 165 1_555 D SG CYS 167 J CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 D SG CYS 27 J CYS 51 1_555 X CAB HEC . J HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.705 ? covale ? covale2 D SG CYS 30 J CYS 54 1_555 X CAC HEC . J HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.696 ? covale ? covale3 E SG CYS 14 K CYS 34 1_555 Z CAB HEC . K HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.716 ? covale ? covale4 E SG CYS 17 K CYS 37 1_555 Z CAC HEC . K HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? covale ? covale5 E SG CYS 110 K CYS 130 1_555 Y CAB HEC . K HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.712 ? covale ? covale6 E SG CYS 113 K CYS 133 1_555 Y CAC HEC . K HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? covale ? covale7 I SG CYS 27 M CYS 51 1_555 FA CAB HEC . M HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? covale ? covale8 I SG CYS 30 M CYS 54 1_555 FA CAC HEC . M HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.7 ? covale ? covale9 J SG CYS 14 N CYS 34 1_555 HA CAB HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.716 ? covale ? covale10 J SG CYS 17 N CYS 37 1_555 HA CAC HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.697 ? covale ? covale11 J SG CYS 110 N CYS 130 1_555 GA CAB HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? covale ? covale12 J SG CYS 113 N CYS 133 1_555 GA CAC HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.689 ? covale ? covale13 L SG CYS 65 F CYS 65 1_555 IA CAB HEC . F HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? covale ? covale14 L SG CYS 68 F CYS 68 1_555 IA CAC HEC . F HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.693 ? covale ? covale15 M SG CYS 143 G CYS 143 1_555 JA CAB HEC . G HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.712 ? covale ? covale16 M SG CYS 146 G CYS 146 1_555 JA CAC HEC . G HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.691 ? covale ? covale17 M SG CYS 233 G CYS 233 1_555 KA CAB HEC . G HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.712 ? covale ? covale18 M SG CYS 236 G CYS 236 1_555 KA CAC HEC . G HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? metalc ? metalc1 A NE2 HIS 54 E HIS 61 1_555 Q FE HEM . E HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc2 A OE2 GLU 116 E GLU 123 1_555 O CA CA . E CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc3 A OE2 GLU 116 E GLU 123 1_555 P CA CA . E CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A NE2 HIS 251 E HIS 258 1_555 N CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc5 A NE2 HIS 252 E HIS 259 1_555 N CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc6 A NE2 HIS 339 E HIS 346 1_555 R FE HEM . E HEM 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc7 A NE2 HIS 341 E HIS 348 1_555 Q FE HEM . E HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc8 P CA CA . E CA 503 1_555 Q O1D HEM . E HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? metalc ? metalc9 P CA CA . E CA 503 1_555 Q O2D HEM . E HEM 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc10 P CA CA . E CA 503 1_555 R O1D HEM . E HEM 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc11 P CA CA . E CA 503 1_555 L OG SER 102 F SER 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc12 B SG CYS 122 C CYS 124 1_555 S FE1 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc13 B O HIS 124 C HIS 126 1_555 S FE2 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc14 B ND1 HIS 124 C HIS 126 1_555 S FE2 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc15 B SG CYS 127 C CYS 129 1_555 S FE1 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc16 B SG CYS 150 C CYS 152 1_555 S FE1 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc17 B ND1 HIS 153 C HIS 155 1_555 S FE2 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc18 C NE2 HIS 87 I HIS 87 1_555 V FE HEM . I HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc19 C NE2 HIS 101 I HIS 101 1_555 U FE HEM . I HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc20 C NE2 HIS 188 I HIS 188 1_555 V FE HEM . I HEM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc21 C NE2 HIS 203 I HIS 203 1_555 U FE HEM . I HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc22 D NE2 HIS 31 J HIS 55 1_555 X FE HEC . J HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc23 E NE2 HIS 18 K HIS 38 1_555 Z FE HEC . K HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc24 E NE2 HIS 114 K HIS 134 1_555 Y FE HEC . K HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc25 G SG CYS 122 Z CYS 124 1_555 AA FE1 FES . Z FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc26 G ND1 HIS 124 Z HIS 126 1_555 AA FE2 FES . Z FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc27 G SG CYS 150 Z CYS 152 1_555 AA FE1 FES . Z FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc28 G ND1 HIS 153 Z HIS 155 1_555 AA FE2 FES . Z FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc29 H NE2 HIS 87 D HIS 87 1_555 DA FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc30 H NE2 HIS 101 D HIS 101 1_555 CA FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc31 H NE2 HIS 188 D HIS 188 1_555 DA FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc32 H NE2 HIS 203 D HIS 203 1_555 CA FE HEM . D HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc33 I NE2 HIS 31 M HIS 55 1_555 FA FE HEC . M HEC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc34 J NE2 HIS 18 N HIS 38 1_555 HA FE HEC . N HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc35 J NE2 HIS 114 N HIS 134 1_555 GA FE HEC . N HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc36 L NE2 HIS 69 F HIS 69 1_555 IA FE HEC . F HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc37 M NE2 HIS 147 G HIS 147 1_555 JA FE HEC . G HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc38 M NE2 HIS 237 G HIS 237 1_555 KA FE HEC . G HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 8SNH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 9 CU E 1 501 503 CU CU . O 10 CA E 1 502 1 CA CA . P 10 CA E 1 503 2 CA CA . Q 11 HEM E 1 504 1 HEM HEM . R 11 HEM E 1 505 2 HEM HEM . S 12 FES C 1 201 201 FES FES . T 13 I7Y I 1 501 1 I7Y GGG . U 11 HEM I 1 502 500 HEM HEM . V 11 HEM I 1 503 501 HEM HEM . W 14 U10 I 1 504 1 U10 U10 . X 15 HEC J 1 500 500 HEC HEC . Y 15 HEC K 1 501 501 HEC HEC . Z 15 HEC K 1 502 500 HEC HEC . AA 12 FES Z 1 201 201 FES FES . BA 13 I7Y Z 1 202 1 I7Y GGG . CA 11 HEM D 1 501 500 HEM HEM . DA 11 HEM D 1 502 501 HEM HEM . EA 14 U10 D 1 503 1 U10 U10 . FA 15 HEC M 1 500 500 HEC HEC . GA 15 HEC N 1 501 501 HEC HEC . HA 15 HEC N 1 502 500 HEC HEC . IA 15 HEC F 1 301 1 HEC HEC . JA 15 HEC G 1 401 2 HEC HEC . KA 15 HEC G 1 402 6 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . S 12 197.202 185.084 175.05 1 139.95 ? FE1 FES 201 C 1 HETATM 2 FE FE2 FES . . . S 12 195.77 183.54 176.738 1 133.07 ? FE2 FES 201 C 1 HETATM 3 S S1 FES . . . S 12 195.232 184.16 174.691 1 136.33 ? S1 FES 201 C 1 HETATM 4 S S2 FES . . . S 12 197.574 184.714 177.191 1 125.75 ? S2 FES 201 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #