data_8SO1 # _model_server_result.job_id GSVfroUM3jQLOLk7takfaQ _model_server_result.datetime_utc '2024-10-26 02:37:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8so1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8SO1 # _exptl.entry_id 8SO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SO1 _cell.length_a 77.809 _cell.length_b 100.86 _cell.length_c 131.039 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -100.86 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 422 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 442 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.199 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 154 n n CHA C4D HEM doub 155 n n CHA HHA HEM sing 156 n n CHB C4A HEM sing 157 n n CHB C1B HEM doub 158 n n CHB HHB HEM sing 159 n n CHC C4B HEM sing 160 n n CHC C1C HEM doub 161 n n CHC HHC HEM sing 162 n n CHD C4C HEM doub 163 n n CHD C1D HEM sing 164 n n CHD HHD HEM sing 165 n n C1A C2A HEM doub 166 n y C1A NA HEM sing 167 n y C2A C3A HEM sing 168 n y C2A CAA HEM sing 169 n n C3A C4A HEM doub 170 n y C3A CMA HEM sing 171 n n C4A NA HEM sing 172 n y CMA HMA HEM sing 173 n n CMA HMAA HEM sing 174 n n CMA HMAB HEM sing 175 n n CAA CBA HEM sing 176 n n CAA HAA HEM sing 177 n n CAA HAAA HEM sing 178 n n CBA CGA HEM sing 179 n n CBA HBA HEM sing 180 n n CBA HBAA HEM sing 181 n n CGA O1A HEM doub 182 n n CGA O2A HEM sing 183 n n C1B C2B HEM sing 184 n n C1B NB HEM sing 185 n n C2B C3B HEM doub 186 n n C2B CMB HEM sing 187 n n C3B C4B HEM sing 188 n n C3B CAB HEM sing 189 n n C4B NB HEM doub 190 n n CMB HMB HEM sing 191 n n CMB HMBA HEM sing 192 n n CMB HMBB HEM sing 193 n n CAB CBB HEM doub 194 n n CAB HAB HEM sing 195 n n CBB HBB HEM sing 196 n n CBB HBBA HEM sing 197 n n C1C C2C HEM sing 198 n y C1C NC HEM sing 199 n y C2C C3C HEM doub 200 n y C2C CMC HEM sing 201 n n C3C C4C HEM sing 202 n y C3C CAC HEM sing 203 n n C4C NC HEM sing 204 n y CMC HMC HEM sing 205 n n CMC HMCA HEM sing 206 n n CMC HMCB HEM sing 207 n n CAC CBC HEM doub 208 n n CAC HAC HEM sing 209 n n CBC HBC HEM sing 210 n n CBC HBCA HEM sing 211 n n C1D C2D HEM sing 212 n n C1D ND HEM doub 213 n n C2D C3D HEM doub 214 n n C2D CMD HEM sing 215 n n C3D C4D HEM sing 216 n n C3D CAD HEM sing 217 n n C4D ND HEM sing 218 n n CMD HMD HEM sing 219 n n CMD HMDA HEM sing 220 n n CMD HMDB HEM sing 221 n n CAD CBD HEM sing 222 n n CAD HAD HEM sing 223 n n CAD HADA HEM sing 224 n n CBD CGD HEM sing 225 n n CBD HBD HEM sing 226 n n CBD HBDA HEM sing 227 n n CGD O1D HEM doub 228 n n CGD O2D HEM sing 229 n n O2A H2A HEM sing 230 n n O2D H2D HEM sing 231 n n FE NA HEM sing 232 n n FE NB HEM sing 233 n n FE NC HEM sing 234 n n FE ND HEM sing 235 n n # _atom_sites.entry_id 8SO1 _atom_sites.fract_transf_matrix[1][1] 0.012852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 CFF A 1 602 700 CFF CAF . D 3 CFF A 1 603 701 CFF CAF . E 3 CFF A 1 604 702 CFF CAF . F 4 HOH A 1 701 14 HOH HOH . F 4 HOH A 2 702 37 HOH HOH . F 4 HOH A 3 703 40 HOH HOH . F 4 HOH A 4 704 48 HOH HOH . F 4 HOH A 5 705 75 HOH HOH . F 4 HOH A 6 706 79 HOH HOH . F 4 HOH A 7 707 39 HOH HOH . F 4 HOH A 8 708 44 HOH HOH . F 4 HOH A 9 709 71 HOH HOH . F 4 HOH A 10 710 3 HOH HOH . F 4 HOH A 11 711 26 HOH HOH . F 4 HOH A 12 712 20 HOH HOH . F 4 HOH A 13 713 46 HOH HOH . F 4 HOH A 14 714 52 HOH HOH . F 4 HOH A 15 715 27 HOH HOH . F 4 HOH A 16 716 18 HOH HOH . F 4 HOH A 17 717 63 HOH HOH . F 4 HOH A 18 718 77 HOH HOH . F 4 HOH A 19 719 17 HOH HOH . F 4 HOH A 20 720 1 HOH HOH . F 4 HOH A 21 721 5 HOH HOH . F 4 HOH A 22 722 34 HOH HOH . F 4 HOH A 23 723 24 HOH HOH . F 4 HOH A 24 724 58 HOH HOH . F 4 HOH A 25 725 4 HOH HOH . F 4 HOH A 26 726 41 HOH HOH . F 4 HOH A 27 727 32 HOH HOH . F 4 HOH A 28 728 10 HOH HOH . F 4 HOH A 29 729 76 HOH HOH . F 4 HOH A 30 730 54 HOH HOH . F 4 HOH A 31 731 29 HOH HOH . F 4 HOH A 32 732 65 HOH HOH . F 4 HOH A 33 733 25 HOH HOH . F 4 HOH A 34 734 15 HOH HOH . F 4 HOH A 35 735 43 HOH HOH . F 4 HOH A 36 736 80 HOH HOH . F 4 HOH A 37 737 61 HOH HOH . F 4 HOH A 38 738 7 HOH HOH . F 4 HOH A 39 739 74 HOH HOH . F 4 HOH A 40 740 8 HOH HOH . F 4 HOH A 41 741 49 HOH HOH . F 4 HOH A 42 742 2 HOH HOH . F 4 HOH A 43 743 73 HOH HOH . F 4 HOH A 44 744 30 HOH HOH . F 4 HOH A 45 745 66 HOH HOH . F 4 HOH A 46 746 72 HOH HOH . F 4 HOH A 47 747 31 HOH HOH . F 4 HOH A 48 748 62 HOH HOH . F 4 HOH A 49 749 51 HOH HOH . F 4 HOH A 50 750 12 HOH HOH . F 4 HOH A 51 751 38 HOH HOH . F 4 HOH A 52 752 22 HOH HOH . F 4 HOH A 53 753 21 HOH HOH . F 4 HOH A 54 754 6 HOH HOH . F 4 HOH A 55 755 50 HOH HOH . F 4 HOH A 56 756 28 HOH HOH . F 4 HOH A 57 757 47 HOH HOH . F 4 HOH A 58 758 64 HOH HOH . F 4 HOH A 59 759 56 HOH HOH . F 4 HOH A 60 760 19 HOH HOH . F 4 HOH A 61 761 55 HOH HOH . F 4 HOH A 62 762 57 HOH HOH . F 4 HOH A 63 763 16 HOH HOH . F 4 HOH A 64 764 11 HOH HOH . F 4 HOH A 65 765 33 HOH HOH . F 4 HOH A 66 766 45 HOH HOH . F 4 HOH A 67 767 69 HOH HOH . F 4 HOH A 68 768 36 HOH HOH . F 4 HOH A 69 769 42 HOH HOH . F 4 HOH A 70 770 78 HOH HOH . F 4 HOH A 71 771 70 HOH HOH . F 4 HOH A 72 772 9 HOH HOH . F 4 HOH A 73 773 60 HOH HOH . F 4 HOH A 74 774 59 HOH HOH . F 4 HOH A 75 775 35 HOH HOH . F 4 HOH A 76 776 67 HOH HOH . F 4 HOH A 77 777 68 HOH HOH . F 4 HOH A 78 778 13 HOH HOH . F 4 HOH A 79 779 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -23.408 -30.563 -10.152 1 60.78 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -22.569 -27.799 -14.05 1 62.14 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -22.032 -23.915 -11.197 1 58.29 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -23.24 -26.607 -7.3 1 58.76 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -23.202 -30.173 -11.456 1 63.37 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -23.204 -31.039 -12.623 1 64.74 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -22.987 -30.279 -13.696 1 64.58 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -22.821 -28.9 -13.259 1 62.35 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -22.905 -30.811 -15.146 1 60.95 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -23.42 -32.563 -12.644 1 60.84 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -24.911 -32.839 -12.572 1 65.6 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -25.164 -34.271 -12.981 1 64.51 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -26.195 -34.529 -13.629 1 63.19 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -24.311 -35.131 -12.666 1 63.57 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -22.299 -26.509 -13.625 1 62.2 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -21.88 -25.395 -14.458 1 62.6 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -21.712 -24.314 -13.647 1 61.97 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -22.039 -24.721 -12.302 1 59.08 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -21.663 -25.495 -15.989 1 58.85 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -21.308 -22.86 -13.986 1 58.74 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -21.529 -22.301 -15.197 1 62.16 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -22.373 -24.298 -9.914 1 60.32 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -22.516 -23.399 -8.787 1 63.18 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -22.841 -24.114 -7.713 1 61.76 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -22.93 -25.52 -8.107 1 62.26 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -22.337 -21.862 -8.803 1 56.05 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -23.072 -23.448 -6.351 1 57.94 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -23.77 -24.089 -5.428 1 66.15 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -23.331 -27.912 -7.729 1 64.47 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -23.502 -29.083 -6.877 1 62.36 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -23.542 -30.163 -7.654 1 64.26 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -23.416 -29.726 -9.04 1 63.98 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -23.606 -29.054 -5.34 1 62.66 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -23.725 -31.62 -7.18 1 62.84 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -25.204 -31.822 -6.904 1 65.14 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -25.542 -33.188 -6.352 1 66.03 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -26.666 -33.342 -5.811 1 65.94 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -24.701 -34.112 -6.472 1 67.09 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -22.954 -28.881 -11.896 1 60.73 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -22.387 -26.048 -12.326 1 62.85 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -22.621 -25.577 -9.459 1 63.23 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -23.286 -28.343 -9.039 1 59.43 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -23.058 -27.164 -10.705 1 55.08 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #