data_8SO1 # _model_server_result.job_id 5vX6Yn10E3arosbpJoAkHg _model_server_result.datetime_utc '2024-10-26 02:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8so1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 8SO1 # _exptl.entry_id 8SO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.191 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CAFFEINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SO1 _cell.length_a 77.809 _cell.length_b 100.86 _cell.length_c 131.039 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -100.86 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 422 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 442 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.199 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N4 O2' _chem_comp.formula_weight 194.191 _chem_comp.id CFF _chem_comp.mon_nstd_flag . _chem_comp.name CAFFEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CFF sing 70 n y N1 C10 CFF sing 71 n n N1 C6 CFF sing 72 n y C2 N3 CFF sing 73 n y C2 O11 CFF doub 74 n n C10 H101 CFF sing 75 n n C10 H102 CFF sing 76 n n C10 H103 CFF sing 77 n n C6 C5 CFF sing 78 n y C6 O13 CFF doub 79 n n N3 C12 CFF sing 80 n n N3 C4 CFF sing 81 n y C12 H121 CFF sing 82 n n C12 H122 CFF sing 83 n n C12 H123 CFF sing 84 n n C4 C5 CFF doub 85 n y C4 N9 CFF sing 86 n y C5 N7 CFF sing 87 n y N9 C8 CFF doub 88 n y N7 C8 CFF sing 89 n y N7 C14 CFF sing 90 n n C8 H81 CFF sing 91 n n C14 H141 CFF sing 92 n n C14 H142 CFF sing 93 n n C14 H143 CFF sing 94 n n # _atom_sites.entry_id 8SO1 _atom_sites.fract_transf_matrix[1][1] 0.012852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 CFF A 1 602 700 CFF CAF . D 3 CFF A 1 603 701 CFF CAF . E 3 CFF A 1 604 702 CFF CAF . F 4 HOH A 1 701 14 HOH HOH . F 4 HOH A 2 702 37 HOH HOH . F 4 HOH A 3 703 40 HOH HOH . F 4 HOH A 4 704 48 HOH HOH . F 4 HOH A 5 705 75 HOH HOH . F 4 HOH A 6 706 79 HOH HOH . F 4 HOH A 7 707 39 HOH HOH . F 4 HOH A 8 708 44 HOH HOH . F 4 HOH A 9 709 71 HOH HOH . F 4 HOH A 10 710 3 HOH HOH . F 4 HOH A 11 711 26 HOH HOH . F 4 HOH A 12 712 20 HOH HOH . F 4 HOH A 13 713 46 HOH HOH . F 4 HOH A 14 714 52 HOH HOH . F 4 HOH A 15 715 27 HOH HOH . F 4 HOH A 16 716 18 HOH HOH . F 4 HOH A 17 717 63 HOH HOH . F 4 HOH A 18 718 77 HOH HOH . F 4 HOH A 19 719 17 HOH HOH . F 4 HOH A 20 720 1 HOH HOH . F 4 HOH A 21 721 5 HOH HOH . F 4 HOH A 22 722 34 HOH HOH . F 4 HOH A 23 723 24 HOH HOH . F 4 HOH A 24 724 58 HOH HOH . F 4 HOH A 25 725 4 HOH HOH . F 4 HOH A 26 726 41 HOH HOH . F 4 HOH A 27 727 32 HOH HOH . F 4 HOH A 28 728 10 HOH HOH . F 4 HOH A 29 729 76 HOH HOH . F 4 HOH A 30 730 54 HOH HOH . F 4 HOH A 31 731 29 HOH HOH . F 4 HOH A 32 732 65 HOH HOH . F 4 HOH A 33 733 25 HOH HOH . F 4 HOH A 34 734 15 HOH HOH . F 4 HOH A 35 735 43 HOH HOH . F 4 HOH A 36 736 80 HOH HOH . F 4 HOH A 37 737 61 HOH HOH . F 4 HOH A 38 738 7 HOH HOH . F 4 HOH A 39 739 74 HOH HOH . F 4 HOH A 40 740 8 HOH HOH . F 4 HOH A 41 741 49 HOH HOH . F 4 HOH A 42 742 2 HOH HOH . F 4 HOH A 43 743 73 HOH HOH . F 4 HOH A 44 744 30 HOH HOH . F 4 HOH A 45 745 66 HOH HOH . F 4 HOH A 46 746 72 HOH HOH . F 4 HOH A 47 747 31 HOH HOH . F 4 HOH A 48 748 62 HOH HOH . F 4 HOH A 49 749 51 HOH HOH . F 4 HOH A 50 750 12 HOH HOH . F 4 HOH A 51 751 38 HOH HOH . F 4 HOH A 52 752 22 HOH HOH . F 4 HOH A 53 753 21 HOH HOH . F 4 HOH A 54 754 6 HOH HOH . F 4 HOH A 55 755 50 HOH HOH . F 4 HOH A 56 756 28 HOH HOH . F 4 HOH A 57 757 47 HOH HOH . F 4 HOH A 58 758 64 HOH HOH . F 4 HOH A 59 759 56 HOH HOH . F 4 HOH A 60 760 19 HOH HOH . F 4 HOH A 61 761 55 HOH HOH . F 4 HOH A 62 762 57 HOH HOH . F 4 HOH A 63 763 16 HOH HOH . F 4 HOH A 64 764 11 HOH HOH . F 4 HOH A 65 765 33 HOH HOH . F 4 HOH A 66 766 45 HOH HOH . F 4 HOH A 67 767 69 HOH HOH . F 4 HOH A 68 768 36 HOH HOH . F 4 HOH A 69 769 42 HOH HOH . F 4 HOH A 70 770 78 HOH HOH . F 4 HOH A 71 771 70 HOH HOH . F 4 HOH A 72 772 9 HOH HOH . F 4 HOH A 73 773 60 HOH HOH . F 4 HOH A 74 774 59 HOH HOH . F 4 HOH A 75 775 35 HOH HOH . F 4 HOH A 76 776 67 HOH HOH . F 4 HOH A 77 777 68 HOH HOH . F 4 HOH A 78 778 13 HOH HOH . F 4 HOH A 79 779 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CFF . . . D 3 -11.591 -40.589 -14.259 0.91 116.92 ? N1 CFF 603 A 1 HETATM 2 C C2 CFF . . . D 3 -11.094 -41.284 -13.074 0.91 121.96 ? C2 CFF 603 A 1 HETATM 3 C C10 CFF . . . D 3 -10.968 -40.841 -15.573 0.91 111.02 ? C10 CFF 603 A 1 HETATM 4 C C6 CFF . . . D 3 -12.668 -39.659 -14.23 0.91 115.69 ? C6 CFF 603 A 1 HETATM 5 N N3 CFF . . . D 3 -11.69 -41.046 -11.817 0.91 119.42 ? N3 CFF 603 A 1 HETATM 6 O O11 CFF . . . D 3 -10.161 -42.084 -13.124 0.91 123.12 ? O11 CFF 603 A 1 HETATM 7 C C12 CFF . . . D 3 -11.169 -41.767 -10.61 0.91 116.94 ? C12 CFF 603 A 1 HETATM 8 C C4 CFF . . . D 3 -12.742 -40.144 -11.752 0.91 118.03 ? C4 CFF 603 A 1 HETATM 9 C C5 CFF . . . D 3 -13.222 -39.47 -12.917 0.91 117.77 ? C5 CFF 603 A 1 HETATM 10 N N9 CFF . . . D 3 -13.466 -39.767 -10.625 0.91 119.07 ? N9 CFF 603 A 1 HETATM 11 O O13 CFF . . . D 3 -13.038 -39.11 -15.255 0.91 117.55 ? O13 CFF 603 A 1 HETATM 12 N N7 CFF . . . D 3 -14.283 -38.645 -12.467 0.91 118.06 ? N7 CFF 603 A 1 HETATM 13 C C8 CFF . . . D 3 -14.374 -38.858 -11.102 0.91 117.83 ? C8 CFF 603 A 1 HETATM 14 C C14 CFF . . . D 3 -15.117 -37.733 -13.267 0.91 109.62 ? C14 CFF 603 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #