data_8SON # _model_server_result.job_id o2l95Iwft1Eaw2t7jSBBgA _model_server_result.datetime_utc '2024-11-14 19:04:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8son # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 8SON # _exptl.entry_id 8SON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SON _cell.length_a 68.534 _cell.length_b 68.827 _cell.length_c 89.329 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SON _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 167 n n C1 C2 GOL sing 168 n n C1 H11 GOL sing 169 n n C1 H12 GOL sing 170 n n O1 HO1 GOL sing 171 n n C2 O2 GOL sing 172 n n C2 C3 GOL sing 173 n n C2 H2 GOL sing 174 n n O2 HO2 GOL sing 175 n n C3 O3 GOL sing 176 n n C3 H31 GOL sing 177 n n C3 H32 GOL sing 178 n n O3 HO3 GOL sing 179 n n # _atom_sites.entry_id 8SON _atom_sites.fract_transf_matrix[1][1] 0.014591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 201 1 GOL GOL . E 3 SO4 A 1 202 1 SO4 SO4 . F 4 30Y A 1 203 3 30Y DRG . G 2 GOL B 1 201 2 GOL GOL . H 3 SO4 B 1 202 2 SO4 SO4 . I 4 30Y B 1 203 2 30Y DRG . J 2 GOL C 1 201 3 GOL GOL . K 3 SO4 C 1 202 3 SO4 SO4 . L 5 HOH A 1 301 76 HOH HOH . L 5 HOH A 2 302 481 HOH HOH . L 5 HOH A 3 303 8 HOH HOH . L 5 HOH A 4 304 220 HOH HOH . L 5 HOH A 5 305 239 HOH HOH . L 5 HOH A 6 306 153 HOH HOH . L 5 HOH A 7 307 149 HOH HOH . L 5 HOH A 8 308 176 HOH HOH . L 5 HOH A 9 309 38 HOH HOH . L 5 HOH A 10 310 185 HOH HOH . L 5 HOH A 11 311 10 HOH HOH . L 5 HOH A 12 312 12 HOH HOH . L 5 HOH A 13 313 115 HOH HOH . L 5 HOH A 14 314 75 HOH HOH . L 5 HOH A 15 315 484 HOH HOH . L 5 HOH A 16 316 280 HOH HOH . L 5 HOH A 17 317 148 HOH HOH . L 5 HOH A 18 318 186 HOH HOH . L 5 HOH A 19 319 126 HOH HOH . L 5 HOH A 20 320 103 HOH HOH . L 5 HOH A 21 321 23 HOH HOH . L 5 HOH A 22 322 129 HOH HOH . L 5 HOH A 23 323 25 HOH HOH . L 5 HOH A 24 324 311 HOH HOH . L 5 HOH A 25 325 361 HOH HOH . L 5 HOH A 26 326 11 HOH HOH . L 5 HOH A 27 327 13 HOH HOH . L 5 HOH A 28 328 470 HOH HOH . L 5 HOH A 29 329 50 HOH HOH . L 5 HOH A 30 330 169 HOH HOH . L 5 HOH A 31 331 197 HOH HOH . L 5 HOH A 32 332 42 HOH HOH . L 5 HOH A 33 333 132 HOH HOH . L 5 HOH A 34 334 31 HOH HOH . L 5 HOH A 35 335 53 HOH HOH . L 5 HOH A 36 336 242 HOH HOH . L 5 HOH A 37 337 486 HOH HOH . L 5 HOH A 38 338 109 HOH HOH . L 5 HOH A 39 339 489 HOH HOH . L 5 HOH A 40 340 162 HOH HOH . L 5 HOH A 41 341 70 HOH HOH . L 5 HOH A 42 342 3 HOH HOH . L 5 HOH A 43 343 158 HOH HOH . L 5 HOH A 44 344 92 HOH HOH . L 5 HOH A 45 345 490 HOH HOH . L 5 HOH A 46 346 116 HOH HOH . L 5 HOH A 47 347 37 HOH HOH . L 5 HOH A 48 348 191 HOH HOH . L 5 HOH A 49 349 90 HOH HOH . L 5 HOH A 50 350 1 HOH HOH . L 5 HOH A 51 351 35 HOH HOH . L 5 HOH A 52 352 93 HOH HOH . L 5 HOH A 53 353 198 HOH HOH . L 5 HOH A 54 354 261 HOH HOH . L 5 HOH A 55 355 122 HOH HOH . L 5 HOH A 56 356 183 HOH HOH . L 5 HOH A 57 357 141 HOH HOH . L 5 HOH A 58 358 224 HOH HOH . L 5 HOH A 59 359 137 HOH HOH . L 5 HOH A 60 360 139 HOH HOH . L 5 HOH A 61 361 473 HOH HOH . L 5 HOH A 62 362 4 HOH HOH . L 5 HOH A 63 363 64 HOH HOH . L 5 HOH A 64 364 57 HOH HOH . L 5 HOH A 65 365 383 HOH HOH . L 5 HOH A 66 366 79 HOH HOH . L 5 HOH A 67 367 16 HOH HOH . L 5 HOH A 68 368 263 HOH HOH . L 5 HOH A 69 369 471 HOH HOH . L 5 HOH A 70 370 240 HOH HOH . L 5 HOH A 71 371 324 HOH HOH . L 5 HOH A 72 372 334 HOH HOH . L 5 HOH A 73 373 97 HOH HOH . L 5 HOH A 74 374 73 HOH HOH . L 5 HOH A 75 375 55 HOH HOH . L 5 HOH A 76 376 227 HOH HOH . L 5 HOH A 77 377 62 HOH HOH . L 5 HOH A 78 378 468 HOH HOH . L 5 HOH A 79 379 172 HOH HOH . L 5 HOH A 80 380 427 HOH HOH . L 5 HOH A 81 381 81 HOH HOH . L 5 HOH A 82 382 98 HOH HOH . L 5 HOH A 83 383 437 HOH HOH . L 5 HOH A 84 384 194 HOH HOH . L 5 HOH A 85 385 161 HOH HOH . L 5 HOH A 86 386 237 HOH HOH . L 5 HOH A 87 387 117 HOH HOH . L 5 HOH A 88 388 346 HOH HOH . L 5 HOH A 89 389 401 HOH HOH . L 5 HOH A 90 390 207 HOH HOH . L 5 HOH A 91 391 174 HOH HOH . L 5 HOH A 92 392 178 HOH HOH . L 5 HOH A 93 393 165 HOH HOH . L 5 HOH A 94 394 68 HOH HOH . L 5 HOH A 95 395 429 HOH HOH . L 5 HOH A 96 396 125 HOH HOH . L 5 HOH A 97 397 112 HOH HOH . L 5 HOH A 98 398 200 HOH HOH . L 5 HOH A 99 399 482 HOH HOH . L 5 HOH A 100 400 222 HOH HOH . L 5 HOH A 101 401 459 HOH HOH . L 5 HOH A 102 402 449 HOH HOH . L 5 HOH A 103 403 230 HOH HOH . L 5 HOH A 104 404 181 HOH HOH . L 5 HOH A 105 405 128 HOH HOH . L 5 HOH A 106 406 426 HOH HOH . L 5 HOH A 107 407 30 HOH HOH . M 5 HOH B 1 301 99 HOH HOH . M 5 HOH B 2 302 294 HOH HOH . M 5 HOH B 3 303 59 HOH HOH . M 5 HOH B 4 304 289 HOH HOH . M 5 HOH B 5 305 485 HOH HOH . M 5 HOH B 6 306 469 HOH HOH . M 5 HOH B 7 307 166 HOH HOH . M 5 HOH B 8 308 170 HOH HOH . M 5 HOH B 9 309 295 HOH HOH . M 5 HOH B 10 310 17 HOH HOH . M 5 HOH B 11 311 107 HOH HOH . M 5 HOH B 12 312 51 HOH HOH . M 5 HOH B 13 313 83 HOH HOH . M 5 HOH B 14 314 15 HOH HOH . M 5 HOH B 15 315 204 HOH HOH . M 5 HOH B 16 316 114 HOH HOH . M 5 HOH B 17 317 270 HOH HOH . M 5 HOH B 18 318 34 HOH HOH . M 5 HOH B 19 319 63 HOH HOH . M 5 HOH B 20 320 293 HOH HOH . M 5 HOH B 21 321 94 HOH HOH . M 5 HOH B 22 322 167 HOH HOH . M 5 HOH B 23 323 225 HOH HOH . M 5 HOH B 24 324 243 HOH HOH . M 5 HOH B 25 325 226 HOH HOH . M 5 HOH B 26 326 234 HOH HOH . M 5 HOH B 27 327 49 HOH HOH . M 5 HOH B 28 328 474 HOH HOH . M 5 HOH B 29 329 36 HOH HOH . M 5 HOH B 30 330 127 HOH HOH . M 5 HOH B 31 331 155 HOH HOH . M 5 HOH B 32 332 211 HOH HOH . M 5 HOH B 33 333 209 HOH HOH . M 5 HOH B 34 334 102 HOH HOH . M 5 HOH B 35 335 71 HOH HOH . M 5 HOH B 36 336 5 HOH HOH . M 5 HOH B 37 337 100 HOH HOH . M 5 HOH B 38 338 247 HOH HOH . M 5 HOH B 39 339 187 HOH HOH . M 5 HOH B 40 340 33 HOH HOH . M 5 HOH B 41 341 133 HOH HOH . M 5 HOH B 42 342 7 HOH HOH . M 5 HOH B 43 343 157 HOH HOH . M 5 HOH B 44 344 232 HOH HOH . M 5 HOH B 45 345 110 HOH HOH . M 5 HOH B 46 346 238 HOH HOH . M 5 HOH B 47 347 430 HOH HOH . M 5 HOH B 48 348 101 HOH HOH . M 5 HOH B 49 349 24 HOH HOH . M 5 HOH B 50 350 212 HOH HOH . M 5 HOH B 51 351 104 HOH HOH . M 5 HOH B 52 352 268 HOH HOH . M 5 HOH B 53 353 353 HOH HOH . M 5 HOH B 54 354 78 HOH HOH . M 5 HOH B 55 355 475 HOH HOH . M 5 HOH B 56 356 472 HOH HOH . M 5 HOH B 57 357 298 HOH HOH . M 5 HOH B 58 358 308 HOH HOH . M 5 HOH B 59 359 66 HOH HOH . M 5 HOH B 60 360 9 HOH HOH . M 5 HOH B 61 361 60 HOH HOH . M 5 HOH B 62 362 215 HOH HOH . M 5 HOH B 63 363 310 HOH HOH . M 5 HOH B 64 364 284 HOH HOH . M 5 HOH B 65 365 14 HOH HOH . M 5 HOH B 66 366 184 HOH HOH . M 5 HOH B 67 367 255 HOH HOH . M 5 HOH B 68 368 105 HOH HOH . M 5 HOH B 69 369 85 HOH HOH . M 5 HOH B 70 370 88 HOH HOH . M 5 HOH B 71 371 269 HOH HOH . M 5 HOH B 72 372 56 HOH HOH . M 5 HOH B 73 373 18 HOH HOH . M 5 HOH B 74 374 303 HOH HOH . M 5 HOH B 75 375 301 HOH HOH . M 5 HOH B 76 376 245 HOH HOH . M 5 HOH B 77 377 189 HOH HOH . M 5 HOH B 78 378 180 HOH HOH . M 5 HOH B 79 379 142 HOH HOH . M 5 HOH B 80 380 259 HOH HOH . M 5 HOH B 81 381 124 HOH HOH . M 5 HOH B 82 382 343 HOH HOH . M 5 HOH B 83 383 244 HOH HOH . M 5 HOH B 84 384 444 HOH HOH . M 5 HOH B 85 385 434 HOH HOH . M 5 HOH B 86 386 386 HOH HOH . M 5 HOH B 87 387 27 HOH HOH . M 5 HOH B 88 388 448 HOH HOH . M 5 HOH B 89 389 163 HOH HOH . M 5 HOH B 90 390 134 HOH HOH . M 5 HOH B 91 391 135 HOH HOH . M 5 HOH B 92 392 423 HOH HOH . M 5 HOH B 93 393 313 HOH HOH . M 5 HOH B 94 394 217 HOH HOH . M 5 HOH B 95 395 439 HOH HOH . M 5 HOH B 96 396 248 HOH HOH . M 5 HOH B 97 397 266 HOH HOH . N 5 HOH C 1 301 45 HOH HOH . N 5 HOH C 2 302 290 HOH HOH . N 5 HOH C 3 303 138 HOH HOH . N 5 HOH C 4 304 173 HOH HOH . N 5 HOH C 5 305 229 HOH HOH . N 5 HOH C 6 306 43 HOH HOH . N 5 HOH C 7 307 143 HOH HOH . N 5 HOH C 8 308 145 HOH HOH . N 5 HOH C 9 309 354 HOH HOH . N 5 HOH C 10 310 108 HOH HOH . N 5 HOH C 11 311 262 HOH HOH . N 5 HOH C 12 312 44 HOH HOH . N 5 HOH C 13 313 40 HOH HOH . N 5 HOH C 14 314 91 HOH HOH . N 5 HOH C 15 315 146 HOH HOH . N 5 HOH C 16 316 368 HOH HOH . N 5 HOH C 17 317 164 HOH HOH . N 5 HOH C 18 318 315 HOH HOH . N 5 HOH C 19 319 182 HOH HOH . N 5 HOH C 20 320 2 HOH HOH . N 5 HOH C 21 321 218 HOH HOH . N 5 HOH C 22 322 22 HOH HOH . N 5 HOH C 23 323 201 HOH HOH . N 5 HOH C 24 324 487 HOH HOH . N 5 HOH C 25 325 199 HOH HOH . N 5 HOH C 26 326 118 HOH HOH . N 5 HOH C 27 327 480 HOH HOH . N 5 HOH C 28 328 195 HOH HOH . N 5 HOH C 29 329 84 HOH HOH . N 5 HOH C 30 330 89 HOH HOH . N 5 HOH C 31 331 106 HOH HOH . N 5 HOH C 32 332 300 HOH HOH . N 5 HOH C 33 333 32 HOH HOH . N 5 HOH C 34 334 58 HOH HOH . N 5 HOH C 35 335 205 HOH HOH . N 5 HOH C 36 336 136 HOH HOH . N 5 HOH C 37 337 61 HOH HOH . N 5 HOH C 38 338 52 HOH HOH . N 5 HOH C 39 339 159 HOH HOH . N 5 HOH C 40 340 156 HOH HOH . N 5 HOH C 41 341 131 HOH HOH . N 5 HOH C 42 342 130 HOH HOH . N 5 HOH C 43 343 120 HOH HOH . N 5 HOH C 44 344 26 HOH HOH . N 5 HOH C 45 345 65 HOH HOH . N 5 HOH C 46 346 6 HOH HOH . N 5 HOH C 47 347 160 HOH HOH . N 5 HOH C 48 348 111 HOH HOH . N 5 HOH C 49 349 177 HOH HOH . N 5 HOH C 50 350 72 HOH HOH . N 5 HOH C 51 351 193 HOH HOH . N 5 HOH C 52 352 28 HOH HOH . N 5 HOH C 53 353 21 HOH HOH . N 5 HOH C 54 354 113 HOH HOH . N 5 HOH C 55 355 210 HOH HOH . N 5 HOH C 56 356 20 HOH HOH . N 5 HOH C 57 357 327 HOH HOH . N 5 HOH C 58 358 477 HOH HOH . N 5 HOH C 59 359 29 HOH HOH . N 5 HOH C 60 360 150 HOH HOH . N 5 HOH C 61 361 342 HOH HOH . N 5 HOH C 62 362 41 HOH HOH . N 5 HOH C 63 363 48 HOH HOH . N 5 HOH C 64 364 47 HOH HOH . N 5 HOH C 65 365 96 HOH HOH . N 5 HOH C 66 366 46 HOH HOH . N 5 HOH C 67 367 82 HOH HOH . N 5 HOH C 68 368 80 HOH HOH . N 5 HOH C 69 369 256 HOH HOH . N 5 HOH C 70 370 121 HOH HOH . N 5 HOH C 71 371 19 HOH HOH . N 5 HOH C 72 372 147 HOH HOH . N 5 HOH C 73 373 271 HOH HOH . N 5 HOH C 74 374 483 HOH HOH . N 5 HOH C 75 375 417 HOH HOH . N 5 HOH C 76 376 95 HOH HOH . N 5 HOH C 77 377 87 HOH HOH . N 5 HOH C 78 378 438 HOH HOH . N 5 HOH C 79 379 432 HOH HOH . N 5 HOH C 80 380 208 HOH HOH . N 5 HOH C 81 381 119 HOH HOH . N 5 HOH C 82 382 74 HOH HOH . N 5 HOH C 83 383 455 HOH HOH . N 5 HOH C 84 384 233 HOH HOH . N 5 HOH C 85 385 283 HOH HOH . N 5 HOH C 86 386 291 HOH HOH . N 5 HOH C 87 387 223 HOH HOH . N 5 HOH C 88 388 424 HOH HOH . N 5 HOH C 89 389 69 HOH HOH . N 5 HOH C 90 390 365 HOH HOH . N 5 HOH C 91 391 77 HOH HOH . N 5 HOH C 92 392 409 HOH HOH . N 5 HOH C 93 393 179 HOH HOH . N 5 HOH C 94 394 151 HOH HOH . N 5 HOH C 95 395 299 HOH HOH . N 5 HOH C 96 396 219 HOH HOH . N 5 HOH C 97 397 221 HOH HOH . N 5 HOH C 98 398 316 HOH HOH . N 5 HOH C 99 399 202 HOH HOH . N 5 HOH C 100 400 425 HOH HOH . N 5 HOH C 101 401 362 HOH HOH . N 5 HOH C 102 402 277 HOH HOH . N 5 HOH C 103 403 450 HOH HOH . N 5 HOH C 104 404 442 HOH HOH . N 5 HOH C 105 405 288 HOH HOH . N 5 HOH C 106 406 214 HOH HOH . N 5 HOH C 107 407 476 HOH HOH . N 5 HOH C 108 408 479 HOH HOH . N 5 HOH C 109 409 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 -18.045 -2.489 -1.008 1 26.56 ? C1 GOL 201 C 1 HETATM 2 O O1 GOL . . . J 2 -18.014 -3.071 -2.337 1 24.37 ? O1 GOL 201 C 1 HETATM 3 C C2 GOL . . . J 2 -17.984 -3.473 0.185 1 24.94 ? C2 GOL 201 C 1 HETATM 4 O O2 GOL . . . J 2 -16.744 -4.251 0.197 1 24.36 ? O2 GOL 201 C 1 HETATM 5 C C3 GOL . . . J 2 -17.987 -2.69 1.455 1 25.23 ? C3 GOL 201 C 1 HETATM 6 O O3 GOL . . . J 2 -19.317 -2.348 1.806 1 25.95 ? O3 GOL 201 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 6 #