data_8SP8
#
_model_server_result.job_id            h4q0T16i5nUOVmDhnXWJhA 
_model_server_result.datetime_utc      '2024-11-04 22:38:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"NA","auth_seq_id":710}' 
#
_entry.id    8SP8 
#
_exptl.entry_id    8SP8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              286.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Tetrahydrocannabivarin 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SP8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 P N N 
? 4 T N N 
? 4 BA N N 
? 4 FA N N 
? 4 NA N N 
? 4 TA N N 
? 4 BB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 542 A ASP 542 1_555 Q CA CA . A CA 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc2 A OD2 ASP 542 A ASP 542 1_555 Q CA CA . A CA 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc3 Q CA CA . A CA 813 1_555 B OD1 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc4 Q CA CA . A CA 813 1_555 B OD2 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc5 Q CA CA . A CA 813 1_555 C OD1 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc6 Q CA CA . A CA 813 1_555 C OD2 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc7 Q CA CA . A CA 813 1_555 D OD1 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc8 Q CA CA . A CA 813 1_555 D OD2 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
#
_chem_comp.formula           'C19 H26 O2' 
_chem_comp.formula_weight    286.409 
_chem_comp.id                I8E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Tetrahydrocannabivarin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (6aR,10aR)-6,6,9-trimethyl-3-propyl-6a,7,8,10a-tetrahydro-6H-dibenzo[b,d]pyran-1-ol;THCV;THV;O-4394;GWP42004 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 I8E sing 150 n n 
C2 C3 I8E sing 151 n n 
C3 C4 I8E sing 152 n n 
C4 C5 I8E doub 153 n y 
C4 C17 I8E sing 154 n y 
C5 C6 I8E sing 155 n y 
O21 C6 I8E sing 156 n n 
C17 C16 I8E doub 157 n y 
C6 C7 I8E doub 158 n y 
C16 C7 I8E sing 159 n y 
C16 O15 I8E sing 160 n n 
C7 C8 I8E sing 161 n n 
C18 C14 I8E sing 162 n n 
O15 C14 I8E sing 163 n n 
C8 C9 I8E sing 164 n n 
C8 C13 I8E sing 165 n n 
C14 C13 I8E sing 166 n n 
C14 C19 I8E sing 167 n n 
C9 C10 I8E doub 168 n n 
C13 C12 I8E sing 169 n n 
C10 C20 I8E sing 170 n n 
C10 C11 I8E sing 171 n n 
C12 C11 I8E sing 172 n n 
C1 H1A I8E sing 173 n n 
C1 H1C I8E sing 174 n n 
C1 H1B I8E sing 175 n n 
C11 H11B I8E sing 176 n n 
C11 H11A I8E sing 177 n n 
C12 H12A I8E sing 178 n n 
C12 H12B I8E sing 179 n n 
C13 H13 I8E sing 180 n n 
C17 H17 I8E sing 181 n n 
C18 H18C I8E sing 182 n n 
C18 H18B I8E sing 183 n n 
C18 H18A I8E sing 184 n n 
C19 H19A I8E sing 185 n n 
C19 H19C I8E sing 186 n n 
C19 H19B I8E sing 187 n n 
C2 H2B I8E sing 188 n n 
C2 H2A I8E sing 189 n n 
C20 H20C I8E sing 190 n n 
C20 H20B I8E sing 191 n n 
C20 H20A I8E sing 192 n n 
C3 H3B I8E sing 193 n n 
C3 H3A I8E sing 194 n n 
C5 H5 I8E sing 195 n n 
C8 H8 I8E sing 196 n n 
C9 H9 I8E sing 197 n n 
O21 H21 I8E sing 198 n n 
#
_atom_sites.entry_id                     8SP8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y01 A 1 801 801 Y01 Y01 . 
F 2 Y01 A 1 802 802 Y01 Y01 . 
G 2 Y01 A 1 803 803 Y01 Y01 . 
H 3 POV A 1 804 805 POV POV . 
I 3 POV A 1 805 806 POV POV . 
J 3 POV A 1 806 807 POV POV . 
K 3 POV A 1 807 809 POV POV . 
L 4 I8E A 1 808 902 I8E THC . 
M 3 POV A 1 809 808 POV POV . 
N 3 POV A 1 810 810 POV POV . 
O 3 POV A 1 811 804 POV POV . 
P 4 I8E A 1 812 901 I8E THC . 
Q 5 CA A 1 813 901 CA CA . 
R 6 CL A 1 814 902 CL CL . 
S 3 POV B 1 701 804 POV POV . 
T 4 I8E B 1 702 901 I8E THC . 
U 2 Y01 B 1 703 801 Y01 Y01 . 
V 2 Y01 B 1 704 802 Y01 Y01 . 
W 2 Y01 B 1 705 803 Y01 Y01 . 
X 3 POV B 1 706 805 POV POV . 
Y 3 POV B 1 707 806 POV POV . 
Z 3 POV B 1 708 807 POV POV . 
AA 3 POV B 1 709 809 POV POV . 
BA 4 I8E B 1 710 902 I8E THC . 
CA 3 POV B 1 711 808 POV POV . 
DA 3 POV B 1 712 810 POV POV . 
EA 3 POV C 1 701 804 POV POV . 
FA 4 I8E C 1 702 901 I8E THC . 
GA 2 Y01 C 1 703 801 Y01 Y01 . 
HA 2 Y01 C 1 704 802 Y01 Y01 . 
IA 2 Y01 C 1 705 803 Y01 Y01 . 
JA 3 POV C 1 706 805 POV POV . 
KA 3 POV C 1 707 806 POV POV . 
LA 3 POV C 1 708 807 POV POV . 
MA 3 POV C 1 709 809 POV POV . 
NA 4 I8E C 1 710 902 I8E THC . 
OA 3 POV C 1 711 808 POV POV . 
PA 3 POV C 1 712 810 POV POV . 
QA 3 POV D 1 701 808 POV POV . 
RA 3 POV D 1 702 810 POV POV . 
SA 3 POV D 1 703 804 POV POV . 
TA 4 I8E D 1 704 901 I8E THC . 
UA 2 Y01 D 1 705 801 Y01 Y01 . 
VA 2 Y01 D 1 706 802 Y01 Y01 . 
WA 2 Y01 D 1 707 803 Y01 Y01 . 
XA 3 POV D 1 708 805 POV POV . 
YA 3 POV D 1 709 806 POV POV . 
ZA 3 POV D 1 710 807 POV POV . 
AB 3 POV D 1 711 809 POV POV . 
BB 4 I8E D 1 712 902 I8E THC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I8E . . . NA 4 123.089 97.292 110.331 1 40.1 ? C1 I8E 710 C 1 
HETATM 2 C C10 I8E . . . NA 4 115.981 103.483 110.488 1 40.1 ? C10 I8E 710 C 1 
HETATM 3 C C11 I8E . . . NA 4 116.287 104.476 111.523 1 40.1 ? C11 I8E 710 C 1 
HETATM 4 C C12 I8E . . . NA 4 116.725 103.752 112.786 1 40.1 ? C12 I8E 710 C 1 
HETATM 5 C C13 I8E . . . NA 4 117.841 102.709 112.557 1 40.1 ? C13 I8E 710 C 1 
HETATM 6 C C14 I8E . . . NA 4 118.14 101.782 113.753 1 40.1 ? C14 I8E 710 C 1 
HETATM 7 C C16 I8E . . . NA 4 119.578 100.653 112.185 1 40.1 ? C16 I8E 710 C 1 
HETATM 8 C C17 I8E . . . NA 4 120.83 100.085 112.225 1 40.1 ? C17 I8E 710 C 1 
HETATM 9 C C18 I8E . . . NA 4 116.905 101.192 114.4 1 40.1 ? C18 I8E 710 C 1 
HETATM 10 C C19 I8E . . . NA 4 119.058 102.381 114.801 1 40.1 ? C19 I8E 710 C 1 
HETATM 11 C C2 I8E . . . NA 4 123.236 98.189 111.53 1 40.1 ? C2 I8E 710 C 1 
HETATM 12 C C20 I8E . . . NA 4 114.635 103.585 109.838 1 40.1 ? C20 I8E 710 C 1 
HETATM 13 C C3 I8E . . . NA 4 123.083 99.664 111.198 1 40.1 ? C3 I8E 710 C 1 
HETATM 14 C C4 I8E . . . NA 4 121.702 100.274 111.168 1 40.1 ? C4 I8E 710 C 1 
HETATM 15 C C5 I8E . . . NA 4 121.283 101.038 110.085 1 40.1 ? C5 I8E 710 C 1 
HETATM 16 C C6 I8E . . . NA 4 120.014 101.598 110.055 1 40.1 ? C6 I8E 710 C 1 
HETATM 17 C C7 I8E . . . NA 4 119.12 101.406 111.117 1 40.1 ? C7 I8E 710 C 1 
HETATM 18 C C8 I8E . . . NA 4 117.672 101.855 111.275 1 40.1 ? C8 I8E 710 C 1 
HETATM 19 C C9 I8E . . . NA 4 116.844 102.513 110.211 1 40.1 ? C9 I8E 710 C 1 
HETATM 20 O O15 I8E . . . NA 4 118.813 100.565 113.307 1 40.1 ? O15 I8E 710 C 1 
HETATM 21 O O21 I8E . . . NA 4 119.751 102.325 108.939 1 40.1 ? O21 I8E 710 C 1 
HETATM 22 H H1A I8E . . . NA 4 123.464 96.407 110.516 1 40.1 ? H1A I8E 710 C 1 
HETATM 23 H H1C I8E . . . NA 4 123.557 97.663 109.557 1 40.1 ? H1C I8E 710 C 1 
HETATM 24 H H1B I8E . . . NA 4 122.145 97.173 110.1 1 40.1 ? H1B I8E 710 C 1 
HETATM 25 H H11B I8E . . . NA 4 115.485 105.003 111.718 1 40.1 ? H11B I8E 710 C 1 
HETATM 26 H H11A I8E . . . NA 4 116.986 105.094 111.231 1 40.1 ? H11A I8E 710 C 1 
HETATM 27 H H12A I8E . . . NA 4 116.997 104.434 113.434 1 40.1 ? H12A I8E 710 C 1 
HETATM 28 H H12B I8E . . . NA 4 115.902 103.351 113.119 1 40.1 ? H12B I8E 710 C 1 
HETATM 29 H H13 I8E . . . NA 4 118.64 103.256 112.401 1 40.1 ? H13 I8E 710 C 1 
HETATM 30 H H17 I8E . . . NA 4 121.091 99.55 113 1 40.1 ? H17 I8E 710 C 1 
HETATM 31 H H18C I8E . . . NA 4 116.564 100.492 113.813 1 40.1 ? H18C I8E 710 C 1 
HETATM 32 H H18B I8E . . . NA 4 116.175 101.796 114.608 1 40.1 ? H18B I8E 710 C 1 
HETATM 33 H H18A I8E . . . NA 4 117.172 100.78 115.246 1 40.1 ? H18A I8E 710 C 1 
HETATM 34 H H19A I8E . . . NA 4 119.585 101.747 115.335 1 40.1 ? H19A I8E 710 C 1 
HETATM 35 H H19C I8E . . . NA 4 118.513 102.879 115.435 1 40.1 ? H19C I8E 710 C 1 
HETATM 36 H H19B I8E . . . NA 4 119.667 103.009 114.375 1 40.1 ? H19B I8E 710 C 1 
HETATM 37 H H2B I8E . . . NA 4 124.117 98.04 111.933 1 40.1 ? H2B I8E 710 C 1 
HETATM 38 H H2A I8E . . . NA 4 122.575 97.921 112.197 1 40.1 ? H2A I8E 710 C 1 
HETATM 39 H H20C I8E . . . NA 4 113.987 103.094 110.378 1 40.1 ? H20C I8E 710 C 1 
HETATM 40 H H20B I8E . . . NA 4 114.651 103.194 108.941 1 40.1 ? H20B I8E 710 C 1 
HETATM 41 H H20A I8E . . . NA 4 114.315 104.506 109.761 1 40.1 ? H20A I8E 710 C 1 
HETATM 42 H H3B I8E . . . NA 4 123.491 99.825 110.332 1 40.1 ? H3B I8E 710 C 1 
HETATM 43 H H3A I8E . . . NA 4 123.636 100.167 111.823 1 40.1 ? H3A I8E 710 C 1 
HETATM 44 H H5 I8E . . . NA 4 121.894 101.161 109.333 1 40.1 ? H5 I8E 710 C 1 
HETATM 45 H H8 I8E . . . NA 4 117.184 101.044 111.522 1 40.1 ? H8 I8E 710 C 1 
HETATM 46 H H9 I8E . . . NA 4 116.941 102.216 109.285 1 40.1 ? H9 I8E 710 C 1 
HETATM 47 H H21 I8E . . . NA 4 118.991 102.65 108.932 1 40.1 ? H21 I8E 710 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           47 
#