data_8SP8
#
_model_server_result.job_id            PjZy2M4tQJjS0IzijX-HLA 
_model_server_result.datetime_utc      '2024-12-03 19:20:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":712}' 
#
_entry.id    8SP8 
#
_exptl.entry_id    8SP8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    28 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SP8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 S N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 JA N N 
? 3 KA N N 
? 3 LA N N 
? 3 MA N N 
? 3 OA N N 
? 3 PA N N 
? 3 QA N N 
? 3 RA N N 
? 3 SA N N 
? 3 XA N N 
? 3 YA N N 
? 3 ZA N N 
? 3 AB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 542 A ASP 542 1_555 Q CA CA . A CA 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc2 A OD2 ASP 542 A ASP 542 1_555 Q CA CA . A CA 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc3 Q CA CA . A CA 813 1_555 B OD1 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc4 Q CA CA . A CA 813 1_555 B OD2 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc5 Q CA CA . A CA 813 1_555 C OD1 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc6 Q CA CA . A CA 813 1_555 C OD2 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc7 Q CA CA . A CA 813 1_555 D OD1 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc8 Q CA CA . A CA 813 1_555 D OD2 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 307 n n 
N C13 POV sing 308 n n 
N C14 POV sing 309 n n 
N C15 POV sing 310 n n 
P O11 POV sing 311 n n 
P O12 POV sing 312 n n 
P O13 POV sing 313 n n 
P O14 POV doub 314 n n 
C1 C2 POV sing 315 n n 
C1 O11 POV sing 316 n n 
C1 H1 POV sing 317 n n 
C1 H1A POV sing 318 n n 
C2 C3 POV sing 319 n n 
C2 O21 POV sing 320 n n 
C2 H2 POV sing 321 n n 
C3 O31 POV sing 322 n n 
C3 H3 POV sing 323 n n 
C3 H3A POV sing 324 n n 
C210 C211 POV sing 325 n n 
C210 C29 POV doub 326 z n 
C210 H210 POV sing 327 n n 
C310 C311 POV sing 328 n n 
C310 C39 POV sing 329 n n 
C310 H310 POV sing 330 n n 
C310 H31A POV sing 331 n n 
C11 C12 POV sing 332 n n 
C11 O12 POV sing 333 n n 
C11 H11 POV sing 334 n n 
C11 H11A POV sing 335 n n 
C211 C212 POV sing 336 n n 
C211 H211 POV sing 337 n n 
C211 H21A POV sing 338 n n 
C311 C312 POV sing 339 n n 
C311 H311 POV sing 340 n n 
C311 H31B POV sing 341 n n 
C12 H12 POV sing 342 n n 
C12 H12A POV sing 343 n n 
C212 C213 POV sing 344 n n 
C212 H212 POV sing 345 n n 
C212 H21B POV sing 346 n n 
C312 C313 POV sing 347 n n 
C312 H312 POV sing 348 n n 
C312 H31C POV sing 349 n n 
C13 H13 POV sing 350 n n 
C13 H13A POV sing 351 n n 
C13 H13B POV sing 352 n n 
C213 C214 POV sing 353 n n 
C213 H213 POV sing 354 n n 
C213 H21C POV sing 355 n n 
C313 C314 POV sing 356 n n 
C313 H313 POV sing 357 n n 
C313 H31D POV sing 358 n n 
C14 H14 POV sing 359 n n 
C14 H14A POV sing 360 n n 
C14 H14B POV sing 361 n n 
C214 C215 POV sing 362 n n 
C214 H214 POV sing 363 n n 
C214 H21D POV sing 364 n n 
C314 C315 POV sing 365 n n 
C314 H314 POV sing 366 n n 
C314 H31E POV sing 367 n n 
C15 H15 POV sing 368 n n 
C15 H15A POV sing 369 n n 
C15 H15B POV sing 370 n n 
C215 C216 POV sing 371 n n 
C215 H215 POV sing 372 n n 
C215 H21E POV sing 373 n n 
C315 C316 POV sing 374 n n 
C315 H315 POV sing 375 n n 
C315 H31F POV sing 376 n n 
C216 C217 POV sing 377 n n 
C216 H216 POV sing 378 n n 
C216 H21F POV sing 379 n n 
C316 H316 POV sing 380 n n 
C316 H31G POV sing 381 n n 
C316 H31H POV sing 382 n n 
C217 C218 POV sing 383 n n 
C217 H217 POV sing 384 n n 
C217 H21G POV sing 385 n n 
C218 H218 POV sing 386 n n 
C218 H21H POV sing 387 n n 
C218 H21J POV sing 388 n n 
C21 O21 POV sing 389 n n 
C21 C22 POV sing 390 n n 
C21 O22 POV doub 391 n n 
C22 C23 POV sing 392 n n 
C22 H22 POV sing 393 n n 
C22 H22A POV sing 394 n n 
C23 C24 POV sing 395 n n 
C23 H23 POV sing 396 n n 
C23 H23A POV sing 397 n n 
C24 C25 POV sing 398 n n 
C24 H24 POV sing 399 n n 
C24 H24A POV sing 400 n n 
C25 C26 POV sing 401 n n 
C25 H25 POV sing 402 n n 
C25 H25A POV sing 403 n n 
C26 C27 POV sing 404 n n 
C26 H26 POV sing 405 n n 
C26 H26A POV sing 406 n n 
C27 C28 POV sing 407 n n 
C27 H27 POV sing 408 n n 
C27 H27A POV sing 409 n n 
C28 C29 POV sing 410 n n 
C28 H28 POV sing 411 n n 
C28 H28A POV sing 412 n n 
C29 H29 POV sing 413 n n 
C31 O31 POV sing 414 n n 
C31 C32 POV sing 415 n n 
C31 O32 POV doub 416 n n 
C32 C33 POV sing 417 n n 
C32 H32 POV sing 418 n n 
C32 H32A POV sing 419 n n 
C33 C34 POV sing 420 n n 
C33 H33 POV sing 421 n n 
C33 H33A POV sing 422 n n 
C34 C35 POV sing 423 n n 
C34 H34 POV sing 424 n n 
C34 H34A POV sing 425 n n 
C35 C36 POV sing 426 n n 
C35 H35 POV sing 427 n n 
C35 H35A POV sing 428 n n 
C36 C37 POV sing 429 n n 
C36 H36 POV sing 430 n n 
C36 H36A POV sing 431 n n 
C37 C38 POV sing 432 n n 
C37 H37 POV sing 433 n n 
C37 H37A POV sing 434 n n 
C38 C39 POV sing 435 n n 
C38 H38 POV sing 436 n n 
C38 H38A POV sing 437 n n 
C39 H39 POV sing 438 n n 
C39 H39A POV sing 439 n n 
#
_atom_sites.entry_id                     8SP8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y01 A 1 801 801 Y01 Y01 . 
F 2 Y01 A 1 802 802 Y01 Y01 . 
G 2 Y01 A 1 803 803 Y01 Y01 . 
H 3 POV A 1 804 805 POV POV . 
I 3 POV A 1 805 806 POV POV . 
J 3 POV A 1 806 807 POV POV . 
K 3 POV A 1 807 809 POV POV . 
L 4 I8E A 1 808 902 I8E THC . 
M 3 POV A 1 809 808 POV POV . 
N 3 POV A 1 810 810 POV POV . 
O 3 POV A 1 811 804 POV POV . 
P 4 I8E A 1 812 901 I8E THC . 
Q 5 CA A 1 813 901 CA CA . 
R 6 CL A 1 814 902 CL CL . 
S 3 POV B 1 701 804 POV POV . 
T 4 I8E B 1 702 901 I8E THC . 
U 2 Y01 B 1 703 801 Y01 Y01 . 
V 2 Y01 B 1 704 802 Y01 Y01 . 
W 2 Y01 B 1 705 803 Y01 Y01 . 
X 3 POV B 1 706 805 POV POV . 
Y 3 POV B 1 707 806 POV POV . 
Z 3 POV B 1 708 807 POV POV . 
AA 3 POV B 1 709 809 POV POV . 
BA 4 I8E B 1 710 902 I8E THC . 
CA 3 POV B 1 711 808 POV POV . 
DA 3 POV B 1 712 810 POV POV . 
EA 3 POV C 1 701 804 POV POV . 
FA 4 I8E C 1 702 901 I8E THC . 
GA 2 Y01 C 1 703 801 Y01 Y01 . 
HA 2 Y01 C 1 704 802 Y01 Y01 . 
IA 2 Y01 C 1 705 803 Y01 Y01 . 
JA 3 POV C 1 706 805 POV POV . 
KA 3 POV C 1 707 806 POV POV . 
LA 3 POV C 1 708 807 POV POV . 
MA 3 POV C 1 709 809 POV POV . 
NA 4 I8E C 1 710 902 I8E THC . 
OA 3 POV C 1 711 808 POV POV . 
PA 3 POV C 1 712 810 POV POV . 
QA 3 POV D 1 701 808 POV POV . 
RA 3 POV D 1 702 810 POV POV . 
SA 3 POV D 1 703 804 POV POV . 
TA 4 I8E D 1 704 901 I8E THC . 
UA 2 Y01 D 1 705 801 Y01 Y01 . 
VA 2 Y01 D 1 706 802 Y01 Y01 . 
WA 2 Y01 D 1 707 803 Y01 Y01 . 
XA 3 POV D 1 708 805 POV POV . 
YA 3 POV D 1 709 806 POV POV . 
ZA 3 POV D 1 710 807 POV POV . 
AB 3 POV D 1 711 809 POV POV . 
BB 4 I8E D 1 712 902 I8E THC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 POV . . . DA 3 140.472 108.881 134.935 1 19.53 ? C1 POV 712 B 1 
HETATM 2 C C2 POV . . . DA 3 141.143 109.575 133.78 1 19.53 ? C2 POV 712 B 1 
HETATM 3 C C3 POV . . . DA 3 141.097 111.073 133.906 1 19.53 ? C3 POV 712 B 1 
HETATM 4 O O11 POV . . . DA 3 139.075 109.241 134.98 0.45 19.53 ? O11 POV 712 B 1 
HETATM 5 C C31 POV . . . DA 3 140.954 112.972 132.494 1 19.53 ? C31 POV 712 B 1 
HETATM 6 O O31 POV . . . DA 3 141.127 111.654 132.584 1 19.53 ? O31 POV 712 B 1 
HETATM 7 C C32 POV . . . DA 3 141.018 113.421 131.067 1 19.53 ? C32 POV 712 B 1 
HETATM 8 O O32 POV . . . DA 3 140.777 113.691 133.439 1 19.53 ? O32 POV 712 B 1 
HETATM 9 C C33 POV . . . DA 3 140.674 114.887 130.852 1 19.53 ? C33 POV 712 B 1 
HETATM 10 C C34 POV . . . DA 3 140.494 115.269 129.388 1 19.53 ? C34 POV 712 B 1 
HETATM 11 C C35 POV . . . DA 3 141.383 114.512 128.418 1 19.53 ? C35 POV 712 B 1 
HETATM 12 C C36 POV . . . DA 3 141.434 115.105 127.028 1 19.53 ? C36 POV 712 B 1 
HETATM 13 C C37 POV . . . DA 3 142.637 114.663 126.213 1 19.53 ? C37 POV 712 B 1 
HETATM 14 C C38 POV . . . DA 3 143.943 115.273 126.674 1 19.53 ? C38 POV 712 B 1 
HETATM 15 C C39 POV . . . DA 3 145.089 115.074 125.697 1 19.53 ? C39 POV 712 B 1 
HETATM 16 H H1 POV . . . DA 3 140.527 107.909 134.84 1 19.53 ? H1 POV 712 B 1 
HETATM 17 H H1A POV . . . DA 3 140.914 109.142 135.767 1 19.53 ? H1A POV 712 B 1 
HETATM 18 H H3 POV . . . DA 3 140.292 111.342 134.389 1 19.53 ? H3 POV 712 B 1 
HETATM 19 H H3A POV . . . DA 3 141.889 111.388 134.383 1 19.53 ? H3A POV 712 B 1 
HETATM 20 H H32 POV . . . DA 3 141.934 113.256 130.772 1 19.53 ? H32 POV 712 B 1 
HETATM 21 H H32A POV . . . DA 3 140.413 112.863 130.542 1 19.53 ? H32A POV 712 B 1 
HETATM 22 H H33 POV . . . DA 3 139.849 115.09 131.334 1 19.53 ? H33 POV 712 B 1 
HETATM 23 H H33A POV . . . DA 3 141.367 115.446 131.254 1 19.53 ? H33A POV 712 B 1 
HETATM 24 H H34 POV . . . DA 3 139.56 115.137 129.132 1 19.53 ? H34 POV 712 B 1 
HETATM 25 H H34A POV . . . DA 3 140.671 116.225 129.294 1 19.53 ? H34A POV 712 B 1 
HETATM 26 H H35 POV . . . DA 3 142.285 114.444 128.783 1 19.53 ? H35 POV 712 B 1 
HETATM 27 H H35A POV . . . DA 3 141.041 113.6 128.336 1 19.53 ? H35A POV 712 B 1 
HETATM 28 H H36 POV . . . DA 3 140.622 114.848 126.549 1 19.53 ? H36 POV 712 B 1 
HETATM 29 H H36A POV . . . DA 3 141.431 116.079 127.098 1 19.53 ? H36A POV 712 B 1 
HETATM 30 H H37 POV . . . DA 3 142.717 113.69 126.259 1 19.53 ? H37 POV 712 B 1 
HETATM 31 H H37A POV . . . DA 3 142.492 114.887 125.272 1 19.53 ? H37A POV 712 B 1 
HETATM 32 H H38 POV . . . DA 3 143.809 116.23 126.831 1 19.53 ? H38 POV 712 B 1 
HETATM 33 H H38A POV . . . DA 3 144.19 114.877 127.533 1 19.53 ? H38A POV 712 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#