data_8SP8 # _model_server_result.job_id tmetKb_I-Bl512bjbkEFpA _model_server_result.datetime_utc '2024-11-21 14:58:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":812}' # _entry.id 8SP8 # _exptl.entry_id 8SP8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 286.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tetrahydrocannabivarin _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SP8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 P N N ? 4 T N N ? 4 BA N N ? 4 FA N N ? 4 NA N N ? 4 TA N N ? 4 BB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 542 A ASP 542 1_555 Q CA CA . A CA 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc2 A OD2 ASP 542 A ASP 542 1_555 Q CA CA . A CA 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc3 Q CA CA . A CA 813 1_555 B OD1 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 Q CA CA . A CA 813 1_555 B OD2 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc5 Q CA CA . A CA 813 1_555 C OD1 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc6 Q CA CA . A CA 813 1_555 C OD2 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 Q CA CA . A CA 813 1_555 D OD1 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc8 Q CA CA . A CA 813 1_555 D OD2 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? # _chem_comp.formula 'C19 H26 O2' _chem_comp.formula_weight 286.409 _chem_comp.id I8E _chem_comp.mon_nstd_flag . _chem_comp.name Tetrahydrocannabivarin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (6aR,10aR)-6,6,9-trimethyl-3-propyl-6a,7,8,10a-tetrahydro-6H-dibenzo[b,d]pyran-1-ol;THCV;THV;O-4394;GWP42004 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I8E sing 150 n n C2 C3 I8E sing 151 n n C3 C4 I8E sing 152 n n C4 C5 I8E doub 153 n y C4 C17 I8E sing 154 n y C5 C6 I8E sing 155 n y O21 C6 I8E sing 156 n n C17 C16 I8E doub 157 n y C6 C7 I8E doub 158 n y C16 C7 I8E sing 159 n y C16 O15 I8E sing 160 n n C7 C8 I8E sing 161 n n C18 C14 I8E sing 162 n n O15 C14 I8E sing 163 n n C8 C9 I8E sing 164 n n C8 C13 I8E sing 165 n n C14 C13 I8E sing 166 n n C14 C19 I8E sing 167 n n C9 C10 I8E doub 168 n n C13 C12 I8E sing 169 n n C10 C20 I8E sing 170 n n C10 C11 I8E sing 171 n n C12 C11 I8E sing 172 n n C1 H1A I8E sing 173 n n C1 H1C I8E sing 174 n n C1 H1B I8E sing 175 n n C11 H11B I8E sing 176 n n C11 H11A I8E sing 177 n n C12 H12A I8E sing 178 n n C12 H12B I8E sing 179 n n C13 H13 I8E sing 180 n n C17 H17 I8E sing 181 n n C18 H18C I8E sing 182 n n C18 H18B I8E sing 183 n n C18 H18A I8E sing 184 n n C19 H19A I8E sing 185 n n C19 H19C I8E sing 186 n n C19 H19B I8E sing 187 n n C2 H2B I8E sing 188 n n C2 H2A I8E sing 189 n n C20 H20C I8E sing 190 n n C20 H20B I8E sing 191 n n C20 H20A I8E sing 192 n n C3 H3B I8E sing 193 n n C3 H3A I8E sing 194 n n C5 H5 I8E sing 195 n n C8 H8 I8E sing 196 n n C9 H9 I8E sing 197 n n O21 H21 I8E sing 198 n n # _atom_sites.entry_id 8SP8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y01 A 1 801 801 Y01 Y01 . F 2 Y01 A 1 802 802 Y01 Y01 . G 2 Y01 A 1 803 803 Y01 Y01 . H 3 POV A 1 804 805 POV POV . I 3 POV A 1 805 806 POV POV . J 3 POV A 1 806 807 POV POV . K 3 POV A 1 807 809 POV POV . L 4 I8E A 1 808 902 I8E THC . M 3 POV A 1 809 808 POV POV . N 3 POV A 1 810 810 POV POV . O 3 POV A 1 811 804 POV POV . P 4 I8E A 1 812 901 I8E THC . Q 5 CA A 1 813 901 CA CA . R 6 CL A 1 814 902 CL CL . S 3 POV B 1 701 804 POV POV . T 4 I8E B 1 702 901 I8E THC . U 2 Y01 B 1 703 801 Y01 Y01 . V 2 Y01 B 1 704 802 Y01 Y01 . W 2 Y01 B 1 705 803 Y01 Y01 . X 3 POV B 1 706 805 POV POV . Y 3 POV B 1 707 806 POV POV . Z 3 POV B 1 708 807 POV POV . AA 3 POV B 1 709 809 POV POV . BA 4 I8E B 1 710 902 I8E THC . CA 3 POV B 1 711 808 POV POV . DA 3 POV B 1 712 810 POV POV . EA 3 POV C 1 701 804 POV POV . FA 4 I8E C 1 702 901 I8E THC . GA 2 Y01 C 1 703 801 Y01 Y01 . HA 2 Y01 C 1 704 802 Y01 Y01 . IA 2 Y01 C 1 705 803 Y01 Y01 . JA 3 POV C 1 706 805 POV POV . KA 3 POV C 1 707 806 POV POV . LA 3 POV C 1 708 807 POV POV . MA 3 POV C 1 709 809 POV POV . NA 4 I8E C 1 710 902 I8E THC . OA 3 POV C 1 711 808 POV POV . PA 3 POV C 1 712 810 POV POV . QA 3 POV D 1 701 808 POV POV . RA 3 POV D 1 702 810 POV POV . SA 3 POV D 1 703 804 POV POV . TA 4 I8E D 1 704 901 I8E THC . UA 2 Y01 D 1 705 801 Y01 Y01 . VA 2 Y01 D 1 706 802 Y01 Y01 . WA 2 Y01 D 1 707 803 Y01 Y01 . XA 3 POV D 1 708 805 POV POV . YA 3 POV D 1 709 806 POV POV . ZA 3 POV D 1 710 807 POV POV . AB 3 POV D 1 711 809 POV POV . BB 4 I8E D 1 712 902 I8E THC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I8E . . . P 4 94.341 90.777 110.649 1 33.02 ? C1 I8E 812 A 1 HETATM 2 C C10 I8E . . . P 4 94.416 85.205 119.069 1 33.02 ? C10 I8E 812 A 1 HETATM 3 C C11 I8E . . . P 4 95.633 85.427 119.913 1 33.02 ? C11 I8E 812 A 1 HETATM 4 C C12 I8E . . . P 4 96.891 85.765 119.132 1 33.02 ? C12 I8E 812 A 1 HETATM 5 C C13 I8E . . . P 4 96.542 86.684 117.962 1 33.02 ? C13 I8E 812 A 1 HETATM 6 C C14 I8E . . . P 4 97.721 87.319 117.226 1 33.02 ? C14 I8E 812 A 1 HETATM 7 C C16 I8E . . . P 4 95.96 88.124 115.746 1 33.02 ? C16 I8E 812 A 1 HETATM 8 C C17 I8E . . . P 4 95.591 89.103 114.849 1 33.02 ? C17 I8E 812 A 1 HETATM 9 C C18 I8E . . . P 4 98.444 86.371 116.282 1 33.02 ? C18 I8E 812 A 1 HETATM 10 C C19 I8E . . . P 4 98.714 88.016 118.138 1 33.02 ? C19 I8E 812 A 1 HETATM 11 C C2 I8E . . . P 4 94.036 89.613 111.551 1 33.02 ? C2 I8E 812 A 1 HETATM 12 C C20 I8E . . . P 4 93.216 84.654 119.779 1 33.02 ? C20 I8E 812 A 1 HETATM 13 C C3 I8E . . . P 4 94.125 89.974 113.013 1 33.02 ? C3 I8E 812 A 1 HETATM 14 C C4 I8E . . . P 4 94.571 88.873 113.942 1 33.02 ? C4 I8E 812 A 1 HETATM 15 C C5 I8E . . . P 4 93.925 87.645 113.964 1 33.02 ? C5 I8E 812 A 1 HETATM 16 C C6 I8E . . . P 4 94.297 86.664 114.869 1 33.02 ? C6 I8E 812 A 1 HETATM 17 C C7 I8E . . . P 4 95.303 86.893 115.811 1 33.02 ? C7 I8E 812 A 1 HETATM 18 C C8 I8E . . . P 4 95.597 85.959 116.982 1 33.02 ? C8 I8E 812 A 1 HETATM 19 C C9 I8E . . . P 4 94.408 85.488 117.77 1 33.02 ? C9 I8E 812 A 1 HETATM 20 O O15 I8E . . . P 4 97.122 88.38 116.429 1 33.02 ? O15 I8E 812 A 1 HETATM 21 O O21 I8E . . . P 4 93.766 85.426 114.696 1 33.02 ? O21 I8E 812 A 1 HETATM 22 H H1A I8E . . . P 4 94.339 90.486 109.715 1 33.02 ? H1A I8E 812 A 1 HETATM 23 H H1C I8E . . . P 4 95.222 91.153 110.848 1 33.02 ? H1C I8E 812 A 1 HETATM 24 H H1B I8E . . . P 4 93.676 91.488 110.747 1 33.02 ? H1B I8E 812 A 1 HETATM 25 H H11B I8E . . . P 4 95.798 84.629 120.452 1 33.02 ? H11B I8E 812 A 1 HETATM 26 H H11A I8E . . . P 4 95.473 86.165 120.532 1 33.02 ? H11A I8E 812 A 1 HETATM 27 H H12A I8E . . . P 4 97.478 86.196 119.78 1 33.02 ? H12A I8E 812 A 1 HETATM 28 H H12B I8E . . . P 4 97.342 84.958 118.821 1 33.02 ? H12B I8E 812 A 1 HETATM 29 H H13 I8E . . . P 4 96.051 87.416 118.385 1 33.02 ? H13 I8E 812 A 1 HETATM 30 H H17 I8E . . . P 4 96.055 89.963 114.859 1 33.02 ? H17 I8E 812 A 1 HETATM 31 H H18C I8E . . . P 4 97.959 86.155 115.46 1 33.02 ? H18C I8E 812 A 1 HETATM 32 H H18B I8E . . . P 4 98.686 85.532 116.721 1 33.02 ? H18B I8E 812 A 1 HETATM 33 H H18A I8E . . . P 4 99.257 86.802 115.967 1 33.02 ? H18A I8E 812 A 1 HETATM 34 H H19A I8E . . . P 4 99.458 88.403 117.635 1 33.02 ? H19A I8E 812 A 1 HETATM 35 H H19C I8E . . . P 4 99.101 87.396 118.783 1 33.02 ? H19C I8E 812 A 1 HETATM 36 H H19B I8E . . . P 4 98.281 88.72 118.659 1 33.02 ? H19B I8E 812 A 1 HETATM 37 H H2B I8E . . . P 4 94.654 88.885 111.352 1 33.02 ? H2B I8E 812 A 1 HETATM 38 H H2A I8E . . . P 4 93.137 89.289 111.341 1 33.02 ? H2A I8E 812 A 1 HETATM 39 H H20C I8E . . . P 4 92.774 83.973 119.234 1 33.02 ? H20C I8E 812 A 1 HETATM 40 H H20B I8E . . . P 4 92.579 85.365 119.987 1 33.02 ? H20B I8E 812 A 1 HETATM 41 H H20A I8E . . . P 4 93.479 84.239 120.624 1 33.02 ? H20A I8E 812 A 1 HETATM 42 H H3B I8E . . . P 4 93.262 90.31 113.327 1 33.02 ? H3B I8E 812 A 1 HETATM 43 H H3A I8E . . . P 4 94.741 90.724 113.122 1 33.02 ? H3A I8E 812 A 1 HETATM 44 H H5 I8E . . . P 4 93.206 87.48 113.323 1 33.02 ? H5 I8E 812 A 1 HETATM 45 H H8 I8E . . . P 4 96.014 85.156 116.61 1 33.02 ? H8 I8E 812 A 1 HETATM 46 H H9 I8E . . . P 4 93.564 85.376 117.291 1 33.02 ? H9 I8E 812 A 1 HETATM 47 H H21 I8E . . . P 4 94.044 84.876 115.273 1 33.02 ? H21 I8E 812 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 61 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 47 #