data_8SPD
#
_model_server_result.job_id            -mYVza4LghrXcaNqVQhPAw 
_model_server_result.datetime_utc      '2024-10-12 13:18:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8spd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    8SPD 
#
_exptl.entry_id    8SPD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SPD 
_cell.length_a            77.178 
_cell.length_b            101.792 
_cell.length_c            125.691 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SPD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C NAN CL6 . A CL6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 174 n n 
CHA C4D HEM doub 175 n n 
CHA HHA HEM sing 176 n n 
CHB C4A HEM sing 177 n n 
CHB C1B HEM doub 178 n n 
CHB HHB HEM sing 179 n n 
CHC C4B HEM sing 180 n n 
CHC C1C HEM doub 181 n n 
CHC HHC HEM sing 182 n n 
CHD C4C HEM doub 183 n n 
CHD C1D HEM sing 184 n n 
CHD HHD HEM sing 185 n n 
C1A C2A HEM doub 186 n y 
C1A NA HEM sing 187 n y 
C2A C3A HEM sing 188 n y 
C2A CAA HEM sing 189 n n 
C3A C4A HEM doub 190 n y 
C3A CMA HEM sing 191 n n 
C4A NA HEM sing 192 n y 
CMA HMA HEM sing 193 n n 
CMA HMAA HEM sing 194 n n 
CMA HMAB HEM sing 195 n n 
CAA CBA HEM sing 196 n n 
CAA HAA HEM sing 197 n n 
CAA HAAA HEM sing 198 n n 
CBA CGA HEM sing 199 n n 
CBA HBA HEM sing 200 n n 
CBA HBAA HEM sing 201 n n 
CGA O1A HEM doub 202 n n 
CGA O2A HEM sing 203 n n 
C1B C2B HEM sing 204 n n 
C1B NB HEM sing 205 n n 
C2B C3B HEM doub 206 n n 
C2B CMB HEM sing 207 n n 
C3B C4B HEM sing 208 n n 
C3B CAB HEM sing 209 n n 
C4B NB HEM doub 210 n n 
CMB HMB HEM sing 211 n n 
CMB HMBA HEM sing 212 n n 
CMB HMBB HEM sing 213 n n 
CAB CBB HEM doub 214 n n 
CAB HAB HEM sing 215 n n 
CBB HBB HEM sing 216 n n 
CBB HBBA HEM sing 217 n n 
C1C C2C HEM sing 218 n y 
C1C NC HEM sing 219 n y 
C2C C3C HEM doub 220 n y 
C2C CMC HEM sing 221 n n 
C3C C4C HEM sing 222 n y 
C3C CAC HEM sing 223 n n 
C4C NC HEM sing 224 n y 
CMC HMC HEM sing 225 n n 
CMC HMCA HEM sing 226 n n 
CMC HMCB HEM sing 227 n n 
CAC CBC HEM doub 228 n n 
CAC HAC HEM sing 229 n n 
CBC HBC HEM sing 230 n n 
CBC HBCA HEM sing 231 n n 
C1D C2D HEM sing 232 n n 
C1D ND HEM doub 233 n n 
C2D C3D HEM doub 234 n n 
C2D CMD HEM sing 235 n n 
C3D C4D HEM sing 236 n n 
C3D CAD HEM sing 237 n n 
C4D ND HEM sing 238 n n 
CMD HMD HEM sing 239 n n 
CMD HMDA HEM sing 240 n n 
CMD HMDB HEM sing 241 n n 
CAD CBD HEM sing 242 n n 
CAD HAD HEM sing 243 n n 
CAD HADA HEM sing 244 n n 
CBD CGD HEM sing 245 n n 
CBD HBD HEM sing 246 n n 
CBD HBDA HEM sing 247 n n 
CGD O1D HEM doub 248 n n 
CGD O2D HEM sing 249 n n 
O2A H2A HEM sing 250 n n 
O2D H2D HEM sing 251 n n 
FE NA HEM sing 252 n n 
FE NB HEM sing 253 n n 
FE NC HEM sing 254 n n 
FE ND HEM sing 255 n n 
#
_atom_sites.entry_id                     8SPD 
_atom_sites.fract_transf_matrix[1][1]    0.012957 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 601 HEM HEM . 
C 3 CL6 A 1 602 602 CL6 CL6 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 15.616 31.251 9.212 1 80.29 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 16.345 28.488 13.128 1 78.38 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 16.921 24.585 10.25 1 86.96 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 15.928 27.315 6.382 1 84.98 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 15.75 30.807 10.505 1 82.41 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 15.652 31.641 11.633 1 81.77 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 15.861 30.874 12.734 1 79.99 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 16.089 29.556 12.295 1 75.27 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 15.844 31.338 14.167 1 74.2 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 15.37 33.121 11.609 1 76.38 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 13.909 33.41 11.951 1 72.25 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 13.717 34.904 11.985 1 77.4 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 14.539 35.651 11.409 1 84.15 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 12.736 35.399 12.582 1 80.7 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 16.585 27.203 12.631 1 86.29 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 16.914 26.129 13.497 1 84.41 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 17.079 25.021 12.721 1 84.36 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 16.842 25.464 11.329 1 83.91 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 17.048 26.217 14.996 1 88.1 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 17.437 23.654 13.15 1 88.1 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 16.656 22.958 13.97 1 104.73 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 16.645 24.974 8.949 1 85.61 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 16.557 24.114 7.844 1 87.12 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 16.27 24.897 6.738 1 84.14 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 16.188 26.241 7.189 1 82.33 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 16.74 22.617 7.875 1 82.48 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 16.089 24.444 5.346 1 84.3 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 15.101 23.621 5.015 1 92.05 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 15.799 28.605 6.89 1 83.86 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 15.573 29.737 5.989 1 82.63 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 15.486 30.828 6.767 1 79.63 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 15.656 30.364 8.147 1 78.94 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 15.465 29.674 4.489 1 86.51 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 15.26 32.245 6.311 1 80.54 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 13.781 32.488 6.025 1 87.12 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 13.635 33.82 5.339 1 92.65 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 14.611 34.601 5.273 1 94.41 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 12.537 34.143 4.836 1 88.18 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 16.041 29.526 10.924 1 78.99 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 16.545 26.777 11.359 1 84.83 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 16.422 26.259 8.537 1 80.25 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 15.839 29.031 8.164 1 85.79 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 16.113 27.976 9.683 1 84.35 3 FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              116 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#