data_8SPF
#
_model_server_result.job_id            z9DMYU3SZMLutHLrL6Am7w 
_model_server_result.datetime_utc      '2025-06-23 04:44:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8spf 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":203}' 
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_entry.id    8SPF 
#
_exptl.entry_id    8SPF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              170.335 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SPF 
_cell.length_a            61.134 
_cell.length_b            83.884 
_cell.length_c            100.345 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SPF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H26' 
_chem_comp.formula_weight    170.335 
_chem_comp.id                D12 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D12 sing 101 n n 
C1 H11 D12 sing 102 n n 
C1 H12 D12 sing 103 n n 
C1 H13 D12 sing 104 n n 
C2 C3 D12 sing 105 n n 
C2 H21 D12 sing 106 n n 
C2 H22 D12 sing 107 n n 
C3 C4 D12 sing 108 n n 
C3 H31 D12 sing 109 n n 
C3 H32 D12 sing 110 n n 
C4 C5 D12 sing 111 n n 
C4 H41 D12 sing 112 n n 
C4 H42 D12 sing 113 n n 
C5 C6 D12 sing 114 n n 
C5 H51 D12 sing 115 n n 
C5 H52 D12 sing 116 n n 
C6 C7 D12 sing 117 n n 
C6 H61 D12 sing 118 n n 
C6 H62 D12 sing 119 n n 
C7 C8 D12 sing 120 n n 
C7 H71 D12 sing 121 n n 
C7 H72 D12 sing 122 n n 
C8 C9 D12 sing 123 n n 
C8 H81 D12 sing 124 n n 
C8 H82 D12 sing 125 n n 
C9 C10 D12 sing 126 n n 
C9 H91 D12 sing 127 n n 
C9 H92 D12 sing 128 n n 
C10 C11 D12 sing 129 n n 
C10 H101 D12 sing 130 n n 
C10 H102 D12 sing 131 n n 
C11 C12 D12 sing 132 n n 
C11 H111 D12 sing 133 n n 
C11 H112 D12 sing 134 n n 
C12 H121 D12 sing 135 n n 
C12 H122 D12 sing 136 n n 
C12 H123 D12 sing 137 n n 
#
_atom_sites.entry_id                     8SPF 
_atom_sites.fract_transf_matrix[1][1]    0.016358 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009966 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 1GP D 1 201 202 1GP 1GP . 
H 3 EDO D 1 202 301 EDO EDO . 
I 3 EDO A 1 201 2 EDO EDO . 
J 3 EDO E 1 201 1 EDO EDO . 
K 4 OCT E 1 202 201 OCT OCT . 
L 5 D12 E 1 203 203 D12 D12 . 
M 3 EDO E 1 204 304 EDO EDO . 
N 6 DD9 F 1 201 3 DD9 DD9 . 
O 3 EDO F 1 202 13 EDO EDO . 
P 7 HOH C 1 201 1 HOH HOH . 
P 7 HOH C 2 202 4 HOH HOH . 
P 7 HOH C 3 203 5 HOH HOH . 
Q 7 HOH D 1 301 302 HOH HOH . 
Q 7 HOH D 2 302 3 HOH HOH . 
R 7 HOH A 1 301 2 HOH HOH . 
S 7 HOH B 1 201 131 HOH HOH . 
T 7 HOH E 1 301 2 HOH HOH . 
T 7 HOH E 2 302 8 HOH HOH . 
T 7 HOH E 3 303 9 HOH HOH . 
T 7 HOH E 4 304 6 HOH HOH . 
U 7 HOH F 1 301 4 HOH HOH . 
U 7 HOH F 2 302 3 HOH HOH . 
U 7 HOH F 3 303 5 HOH HOH . 
U 7 HOH F 4 304 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D12 . . . L 5 -0.699 20.962 25.83 1 90.67 ? C1 D12 203 E 1 
HETATM 2 C C2 D12 . . . L 5 -0.94 19.732 24.956 1 99.8 ? C2 D12 203 E 1 
HETATM 3 C C3 D12 . . . L 5 -2.367 19.228 25.163 1 105 ? C3 D12 203 E 1 
HETATM 4 C C4 D12 . . . L 5 -2.407 18.259 26.343 1 104.12 ? C4 D12 203 E 1 
HETATM 5 C C5 D12 . . . L 5 -2.651 16.841 25.831 1 105.05 ? C5 D12 203 E 1 
HETATM 6 C C6 D12 . . . L 5 -2.099 15.826 26.829 1 98.14 ? C6 D12 203 E 1 
HETATM 7 C C7 D12 . . . L 5 -2.611 14.436 26.458 1 96.87 ? C7 D12 203 E 1 
HETATM 8 C C8 D12 . . . L 5 -1.46 13.433 26.484 1 86.82 ? C8 D12 203 E 1 
HETATM 9 C C9 D12 . . . L 5 -2.009 12.04 26.18 1 88.31 ? C9 D12 203 E 1 
HETATM 10 C C10 D12 . . . L 5 -2.148 11.86 24.67 1 90.73 ? C10 D12 203 E 1 
HETATM 11 C C11 D12 . . . L 5 -3.013 10.634 24.387 1 86.43 ? C11 D12 203 E 1 
HETATM 12 C C12 D12 . . . L 5 -3.199 10.476 22.88 1 89.17 ? C12 D12 203 E 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#