data_8SPM
#
_model_server_result.job_id            zUtxzv4YwG0F1jJQUHY09w 
_model_server_result.datetime_utc      '2024-10-19 16:27:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8spm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    8SPM 
#
_exptl.entry_id    8SPM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SPM 
_cell.length_a            66.42 
_cell.length_b            66.42 
_cell.length_c            267.77 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 415 A HIS 416 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc2 B N1 II1 . A II1 601 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc3 B O3 II1 . A II1 601 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc4 B N II1 . A II1 601 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc5 B N2 II1 . A II1 601 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc6 B O1 II1 . A II1 601 1_555 C NI NI . A NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8SPM 
_atom_sites.fract_transf_matrix[1][1]    0.015056 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015056 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003735 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 II1 A 1 601 1 II1 AMA . 
C 3 NI A 1 602 2 NI NI . 
D 4 HOH A 1 701 95 HOH HOH . 
D 4 HOH A 2 702 12 HOH HOH . 
D 4 HOH A 3 703 87 HOH HOH . 
D 4 HOH A 4 704 101 HOH HOH . 
D 4 HOH A 5 705 44 HOH HOH . 
D 4 HOH A 6 706 38 HOH HOH . 
D 4 HOH A 7 707 14 HOH HOH . 
D 4 HOH A 8 708 9 HOH HOH . 
D 4 HOH A 9 709 50 HOH HOH . 
D 4 HOH A 10 710 58 HOH HOH . 
D 4 HOH A 11 711 32 HOH HOH . 
D 4 HOH A 12 712 52 HOH HOH . 
D 4 HOH A 13 713 11 HOH HOH . 
D 4 HOH A 14 714 100 HOH HOH . 
D 4 HOH A 15 715 15 HOH HOH . 
D 4 HOH A 16 716 56 HOH HOH . 
D 4 HOH A 17 717 45 HOH HOH . 
D 4 HOH A 18 718 47 HOH HOH . 
D 4 HOH A 19 719 90 HOH HOH . 
D 4 HOH A 20 720 53 HOH HOH . 
D 4 HOH A 21 721 103 HOH HOH . 
D 4 HOH A 22 722 67 HOH HOH . 
D 4 HOH A 23 723 7 HOH HOH . 
D 4 HOH A 24 724 99 HOH HOH . 
D 4 HOH A 25 725 23 HOH HOH . 
D 4 HOH A 26 726 18 HOH HOH . 
D 4 HOH A 27 727 35 HOH HOH . 
D 4 HOH A 28 728 72 HOH HOH . 
D 4 HOH A 29 729 30 HOH HOH . 
D 4 HOH A 30 730 69 HOH HOH . 
D 4 HOH A 31 731 88 HOH HOH . 
D 4 HOH A 32 732 41 HOH HOH . 
D 4 HOH A 33 733 57 HOH HOH . 
D 4 HOH A 34 734 43 HOH HOH . 
D 4 HOH A 35 735 68 HOH HOH . 
D 4 HOH A 36 736 75 HOH HOH . 
D 4 HOH A 37 737 19 HOH HOH . 
D 4 HOH A 38 738 65 HOH HOH . 
D 4 HOH A 39 739 17 HOH HOH . 
D 4 HOH A 40 740 39 HOH HOH . 
D 4 HOH A 41 741 1 HOH HOH . 
D 4 HOH A 42 742 29 HOH HOH . 
D 4 HOH A 43 743 31 HOH HOH . 
D 4 HOH A 44 744 48 HOH HOH . 
D 4 HOH A 45 745 24 HOH HOH . 
D 4 HOH A 46 746 10 HOH HOH . 
D 4 HOH A 47 747 28 HOH HOH . 
D 4 HOH A 48 748 6 HOH HOH . 
D 4 HOH A 49 749 40 HOH HOH . 
D 4 HOH A 50 750 22 HOH HOH . 
D 4 HOH A 51 751 73 HOH HOH . 
D 4 HOH A 52 752 61 HOH HOH . 
D 4 HOH A 53 753 55 HOH HOH . 
D 4 HOH A 54 754 106 HOH HOH . 
D 4 HOH A 55 755 54 HOH HOH . 
D 4 HOH A 56 756 2 HOH HOH . 
D 4 HOH A 57 757 42 HOH HOH . 
D 4 HOH A 58 758 3 HOH HOH . 
D 4 HOH A 59 759 4 HOH HOH . 
D 4 HOH A 60 760 64 HOH HOH . 
D 4 HOH A 61 761 83 HOH HOH . 
D 4 HOH A 62 762 98 HOH HOH . 
D 4 HOH A 63 763 21 HOH HOH . 
D 4 HOH A 64 764 26 HOH HOH . 
D 4 HOH A 65 765 34 HOH HOH . 
D 4 HOH A 66 766 51 HOH HOH . 
D 4 HOH A 67 767 49 HOH HOH . 
D 4 HOH A 68 768 13 HOH HOH . 
D 4 HOH A 69 769 78 HOH HOH . 
D 4 HOH A 70 770 89 HOH HOH . 
D 4 HOH A 71 771 76 HOH HOH . 
D 4 HOH A 72 772 102 HOH HOH . 
D 4 HOH A 73 773 5 HOH HOH . 
D 4 HOH A 74 774 70 HOH HOH . 
D 4 HOH A 75 775 36 HOH HOH . 
D 4 HOH A 76 776 8 HOH HOH . 
D 4 HOH A 77 777 59 HOH HOH . 
D 4 HOH A 78 778 96 HOH HOH . 
D 4 HOH A 79 779 74 HOH HOH . 
D 4 HOH A 80 780 60 HOH HOH . 
D 4 HOH A 81 781 33 HOH HOH . 
D 4 HOH A 82 782 20 HOH HOH . 
D 4 HOH A 83 783 62 HOH HOH . 
D 4 HOH A 84 784 104 HOH HOH . 
D 4 HOH A 85 785 84 HOH HOH . 
D 4 HOH A 86 786 63 HOH HOH . 
D 4 HOH A 87 787 27 HOH HOH . 
D 4 HOH A 88 788 79 HOH HOH . 
D 4 HOH A 89 789 71 HOH HOH . 
D 4 HOH A 90 790 66 HOH HOH . 
D 4 HOH A 91 791 16 HOH HOH . 
D 4 HOH A 92 792 25 HOH HOH . 
D 4 HOH A 93 793 105 HOH HOH . 
D 4 HOH A 94 794 91 HOH HOH . 
D 4 HOH A 95 795 94 HOH HOH . 
D 4 HOH A 96 796 77 HOH HOH . 
D 4 HOH A 97 797 93 HOH HOH . 
D 4 HOH A 98 798 37 HOH HOH . 
D 4 HOH A 99 799 108 HOH HOH . 
D 4 HOH A 100 800 92 HOH HOH . 
D 4 HOH A 101 801 85 HOH HOH . 
D 4 HOH A 102 802 107 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -24.511 
_atom_site.Cartn_y               -5.89 
_atom_site.Cartn_z               -15.073 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#