data_8SPX # _model_server_result.job_id ulK7sLsdce3gKxxBV1aHmg _model_server_result.datetime_utc '2024-10-25 20:24:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8spx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 8SPX # _exptl.entry_id 8SPX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O1B ATP . A ATP 600 1_555 H MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 G O3B ATP . A ATP 600 1_555 H MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 C OG1 THR 151 C THR 176 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc4 K O2G ATP . C ATP 600 1_555 L MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc5 D OG1 THR 165 D THR 165 1_555 N MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 M O1G ATP . D ATP 500 1_555 N MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc7 O O1G ATP . E ATP 500 1_555 P MG MG . E MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc8 F OG1 THR 165 F THR 165 1_555 Q MG MG . F MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc9 Q MG MG . F MG 501 1_555 R O2B ADP . F ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc10 Q MG MG . F MG 501 1_555 S O3 PO4 . F PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc11 Q MG MG . F MG 501 1_555 S O4 PO4 . F PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 8SPX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ATP A 1 600 600 ATP ATP . H 4 MG A 1 601 601 MG MG . I 3 ATP B 1 600 600 ATP ATP . J 4 MG B 1 601 601 MG MG . K 3 ATP C 1 600 600 ATP ATP . L 4 MG C 1 601 601 MG MG . M 3 ATP D 1 500 500 ATP ATP . N 4 MG D 1 501 501 MG MG . O 3 ATP E 1 500 500 ATP ATP . P 4 MG E 1 501 501 MG MG . Q 4 MG F 1 501 502 MG MG . R 5 ADP F 1 502 601 ADP ADP . S 6 PO4 F 1 503 602 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 3 102.288 93.317 82.587 1 29.36 ? PG ATP 600 A 1 HETATM 2 O O1G ATP . . . G 3 101.038 93.205 83.399 1 29.36 ? O1G ATP 600 A 1 HETATM 3 O O2G ATP . . . G 3 102.99 91.985 82.335 1 29.36 ? O2G ATP 600 A 1 HETATM 4 O O3G ATP . . . G 3 103.303 94.309 83.16 1 29.36 ? O3G ATP 600 A 1 HETATM 5 P PB ATP . . . G 3 101.053 94.937 80.425 1 29.36 ? PB ATP 600 A 1 HETATM 6 O O1B ATP . . . G 3 101.712 95.451 79.215 1 29.36 ? O1B ATP 600 A 1 HETATM 7 O O2B ATP . . . G 3 100.664 95.965 81.482 1 29.36 ? O2B ATP 600 A 1 HETATM 8 O O3B ATP . . . G 3 101.959 93.872 81.135 1 29.36 ? O3B ATP 600 A 1 HETATM 9 P PA ATP . . . G 3 99.28 93.042 79.026 1 29.36 ? PA ATP 600 A 1 HETATM 10 O O1A ATP . . . G 3 100.128 91.831 79.061 1 29.36 ? O1A ATP 600 A 1 HETATM 11 O O2A ATP . . . G 3 99.235 93.764 77.686 1 29.36 ? O2A ATP 600 A 1 HETATM 12 O O3A ATP . . . G 3 99.738 94.097 80.11 1 29.36 ? O3A ATP 600 A 1 HETATM 13 O O5' ATP . . . G 3 97.798 92.722 79.46 1 29.36 ? O5' ATP 600 A 1 HETATM 14 C C5' ATP . . . G 3 96.68 93.422 78.877 1 29.36 ? C5' ATP 600 A 1 HETATM 15 C C4' ATP . . . G 3 95.407 92.911 79.503 1 29.36 ? C4' ATP 600 A 1 HETATM 16 O O4' ATP . . . G 3 94.314 93.8 79.178 1 29.36 ? O4' ATP 600 A 1 HETATM 17 C C3' ATP . . . G 3 94.967 91.516 79.062 1 29.36 ? C3' ATP 600 A 1 HETATM 18 O O3' ATP . . . G 3 94.402 90.802 80.155 1 29.36 ? O3' ATP 600 A 1 HETATM 19 C C2' ATP . . . G 3 93.911 91.813 77.996 1 29.36 ? C2' ATP 600 A 1 HETATM 20 O O2' ATP . . . G 3 92.951 90.767 77.9 1 29.36 ? O2' ATP 600 A 1 HETATM 21 C C1' ATP . . . G 3 93.267 93.071 78.57 1 29.36 ? C1' ATP 600 A 1 HETATM 22 N N9 ATP . . . G 3 92.623 93.925 77.58 1 29.36 ? N9 ATP 600 A 1 HETATM 23 C C8 ATP . . . G 3 93.201 94.934 76.856 1 29.36 ? C8 ATP 600 A 1 HETATM 24 N N7 ATP . . . G 3 92.38 95.547 76.039 1 29.36 ? N7 ATP 600 A 1 HETATM 25 C C5 ATP . . . G 3 91.173 94.896 76.241 1 29.36 ? C5 ATP 600 A 1 HETATM 26 C C6 ATP . . . G 3 89.894 95.068 75.677 1 29.36 ? C6 ATP 600 A 1 HETATM 27 N N6 ATP . . . G 3 89.607 95.989 74.751 1 29.36 ? N6 ATP 600 A 1 HETATM 28 N N1 ATP . . . G 3 88.905 94.252 76.1 1 29.36 ? N1 ATP 600 A 1 HETATM 29 C C2 ATP . . . G 3 89.185 93.328 77.023 1 29.36 ? C2 ATP 600 A 1 HETATM 30 N N3 ATP . . . G 3 90.348 93.073 77.626 1 29.36 ? N3 ATP 600 A 1 HETATM 31 C C4 ATP . . . G 3 91.308 93.896 77.19 1 29.36 ? C4 ATP 600 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #