data_8SQ0
#
_model_server_result.job_id            FXSaljnn3QDTO4almkYJfg 
_model_server_result.datetime_utc      '2024-11-25 11:36:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sq0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1602}' 
#
_entry.id    8SQ0 
#
_exptl.entry_id    8SQ0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              673.901 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SQ0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SQ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
_chem_comp.formula           'C36 H68 N O8 P' 
_chem_comp.formula_weight    673.901 
_chem_comp.id                GP7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-pentadecanoyl-2-hexadecanoyl-sn-glycero-3-phosphoethanolamine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P GP7 doub 129 n n 
P O2P GP7 sing 130 n n 
P O3P GP7 sing 131 n n 
P O4P GP7 sing 132 n n 
C1 C2 GP7 sing 133 n n 
C1 O3P GP7 sing 134 n n 
C2 O2 GP7 sing 135 n n 
C2 C3 GP7 sing 136 n n 
O2 C31 GP7 sing 137 n n 
C3 O3 GP7 sing 138 n n 
O3 C11 GP7 sing 139 n n 
C11 O11 GP7 doub 140 n n 
C11 C12 GP7 sing 141 n n 
C12 C13 GP7 sing 142 n n 
C13 C14 GP7 sing 143 n n 
C14 C15 GP7 sing 144 n n 
C15 C16 GP7 sing 145 n n 
C16 C17 GP7 sing 146 n n 
C17 C18 GP7 sing 147 n n 
C18 C19 GP7 sing 148 n n 
C19 C20 GP7 sing 149 n n 
C20 C21 GP7 sing 150 n n 
C21 C22 GP7 sing 151 n n 
C22 C23 GP7 sing 152 n n 
C23 C24 GP7 sing 153 n n 
C24 C25 GP7 sing 154 n n 
C31 O31 GP7 doub 155 n n 
C31 C32 GP7 sing 156 n n 
C32 C33 GP7 sing 157 n n 
C33 C34 GP7 sing 158 n n 
C34 C35 GP7 sing 159 n n 
C35 C36 GP7 sing 160 n n 
C36 C37 GP7 sing 161 n n 
C37 C38 GP7 sing 162 n n 
C38 C39 GP7 sing 163 n n 
C39 C40 GP7 doub 164 n n 
C40 C41 GP7 sing 165 n n 
C41 C42 GP7 sing 166 n n 
C42 C43 GP7 doub 167 n n 
C43 C44 GP7 sing 168 n n 
C44 C45 GP7 sing 169 n n 
C45 C46 GP7 sing 170 n n 
O4P C351 GP7 sing 171 n n 
C351 C361 GP7 sing 172 n n 
C361 N1 GP7 sing 173 n n 
C1 H1 GP7 sing 174 n n 
C1 H1A GP7 sing 175 n n 
C2 H2 GP7 sing 176 n n 
C3 H3 GP7 sing 177 n n 
C3 H3A GP7 sing 178 n n 
C12 H12 GP7 sing 179 n n 
C12 H12A GP7 sing 180 n n 
C13 H13 GP7 sing 181 n n 
C13 H13A GP7 sing 182 n n 
C14 H14 GP7 sing 183 n n 
C14 H14A GP7 sing 184 n n 
C15 H15 GP7 sing 185 n n 
C15 H15A GP7 sing 186 n n 
C16 H16 GP7 sing 187 n n 
C16 H16A GP7 sing 188 n n 
C17 H17 GP7 sing 189 n n 
C17 H17A GP7 sing 190 n n 
C18 H18 GP7 sing 191 n n 
C18 H18A GP7 sing 192 n n 
C19 H19 GP7 sing 193 n n 
C19 H19A GP7 sing 194 n n 
C20 H20 GP7 sing 195 n n 
C20 H20A GP7 sing 196 n n 
C21 H21 GP7 sing 197 n n 
C21 H21A GP7 sing 198 n n 
C22 H22 GP7 sing 199 n n 
C22 H22A GP7 sing 200 n n 
C23 H23 GP7 sing 201 n n 
C23 H23A GP7 sing 202 n n 
C24 H24 GP7 sing 203 n n 
C24 H24A GP7 sing 204 n n 
C25 H25 GP7 sing 205 n n 
C25 H25A GP7 sing 206 n n 
C25 H25B GP7 sing 207 n n 
O2P H351 GP7 sing 208 n n 
C32 H32 GP7 sing 209 n n 
C32 H32A GP7 sing 210 n n 
C33 H33 GP7 sing 211 n n 
C33 H33A GP7 sing 212 n n 
C34 H34 GP7 sing 213 e n 
C34 H34A GP7 sing 214 n n 
C35 H35 GP7 sing 215 n n 
C35 H35A GP7 sing 216 n n 
C36 H36 GP7 sing 217 n n 
C36 H36A GP7 sing 218 n n 
C37 H37 GP7 sing 219 n n 
C37 H37A GP7 sing 220 e n 
C38 H38 GP7 sing 221 n n 
C38 H38A GP7 sing 222 n n 
C39 H39 GP7 sing 223 n n 
C40 H40 GP7 sing 224 n n 
C41 H41 GP7 sing 225 n n 
C41 H41A GP7 sing 226 n n 
C42 H42 GP7 sing 227 n n 
C43 H43 GP7 sing 228 n n 
C44 H44 GP7 sing 229 n n 
C44 H44A GP7 sing 230 n n 
C45 H45 GP7 sing 231 n n 
C45 H45A GP7 sing 232 n n 
C46 H46 GP7 sing 233 n n 
C46 H46A GP7 sing 234 n n 
C46 H46B GP7 sing 235 n n 
C351 H63 GP7 sing 236 n n 
C351 H64 GP7 sing 237 n n 
C361 H65 GP7 sing 238 n n 
C361 H66 GP7 sing 239 n n 
N1 H67 GP7 sing 240 n n 
N1 H68 GP7 sing 241 n n 
#
_atom_sites.entry_id                     8SQ0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PTY A 1 1601 1601 PTY PTY . 
F 4 GP7 A 1 1602 1602 GP7 GP7 . 
G 5 LPP A 1 1603 1603 LPP LPP . 
H 3 PTY B 1 1601 1601 PTY PTY . 
I 4 GP7 B 1 1602 1602 GP7 GP7 . 
J 5 LPP B 1 1603 1603 LPP LPP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P GP7 . . . F 4 185.645 208.038 175.857 1 51.63 ? P GP7 1602 A 1 
HETATM 2 C C1 GP7 . . . F 4 183.421 208.935 176.866 1 51.63 ? C1 GP7 1602 A 1 
HETATM 3 C C2 GP7 . . . F 4 182.896 209.881 177.94 1 51.63 ? C2 GP7 1602 A 1 
HETATM 4 O O2 GP7 . . . F 4 182.818 209.154 179.125 1 51.63 ? O2 GP7 1602 A 1 
HETATM 5 C C3 GP7 . . . F 4 181.515 210.403 177.534 1 51.63 ? C3 GP7 1602 A 1 
HETATM 6 O O3 GP7 . . . F 4 181.168 211.546 178.269 1 51.63 ? O3 GP7 1602 A 1 
HETATM 7 C C11 GP7 . . . F 4 180.142 212.298 177.69 1 51.63 ? C11 GP7 1602 A 1 
HETATM 8 O O11 GP7 . . . F 4 179.67 211.927 176.678 1 51.63 ? O11 GP7 1602 A 1 
HETATM 9 C C12 GP7 . . . F 4 179.627 213.581 178.344 1 51.63 ? C12 GP7 1602 A 1 
HETATM 10 C C13 GP7 . . . F 4 180.703 214.193 179.237 1 51.63 ? C13 GP7 1602 A 1 
HETATM 11 C C14 GP7 . . . F 4 180.436 215.677 179.478 1 51.63 ? C14 GP7 1602 A 1 
HETATM 12 C C15 GP7 . . . F 4 181.727 216.348 179.936 1 51.63 ? C15 GP7 1602 A 1 
HETATM 13 C C16 GP7 . . . F 4 181.587 217.865 179.879 1 51.63 ? C16 GP7 1602 A 1 
HETATM 14 C C17 GP7 . . . F 4 182.963 218.479 179.626 1 51.63 ? C17 GP7 1602 A 1 
HETATM 15 C C18 GP7 . . . F 4 182.938 219.996 179.804 1 51.63 ? C18 GP7 1602 A 1 
HETATM 16 C C19 GP7 . . . F 4 181.985 220.621 178.792 1 51.63 ? C19 GP7 1602 A 1 
HETATM 17 O O1P GP7 . . . F 4 186.887 208.868 175.681 1 51.63 ? O1P GP7 1602 A 1 
HETATM 18 C C20 GP7 . . . F 4 182.162 222.133 178.797 1 51.63 ? C20 GP7 1602 A 1 
HETATM 19 C C21 GP7 . . . F 4 180.83 222.815 178.521 1 51.63 ? C21 GP7 1602 A 1 
HETATM 20 C C22 GP7 . . . F 4 180.246 223.298 179.84 1 51.63 ? C22 GP7 1602 A 1 
HETATM 21 C C23 GP7 . . . F 4 179.504 224.61 179.622 1 51.63 ? C23 GP7 1602 A 1 
HETATM 22 C C24 GP7 . . . F 4 178.003 224.358 179.643 1 51.63 ? C24 GP7 1602 A 1 
HETATM 23 C C25 GP7 . . . F 4 177.272 225.667 179.914 1 51.63 ? C25 GP7 1602 A 1 
HETATM 24 O O2P GP7 . . . F 4 184.815 208.142 174.611 1 51.63 ? O2P GP7 1602 A 1 
HETATM 25 C C31 GP7 . . . F 4 182.723 209.935 180.271 1 51.63 ? C31 GP7 1602 A 1 
HETATM 26 O O31 GP7 . . . F 4 183.168 211.024 180.271 1 51.63 ? O31 GP7 1602 A 1 
HETATM 27 C C32 GP7 . . . F 4 182.04 209.406 181.519 1 51.63 ? C32 GP7 1602 A 1 
HETATM 28 C C33 GP7 . . . F 4 181.293 210.57 182.151 1 51.63 ? C33 GP7 1602 A 1 
HETATM 29 C C34 GP7 . . . F 4 180.951 210.186 183.581 1 51.63 ? C34 GP7 1602 A 1 
HETATM 30 C C35 GP7 . . . F 4 179.499 210.534 183.858 1 51.63 ? C35 GP7 1602 A 1 
HETATM 31 C C36 GP7 . . . F 4 179.245 210.392 185.351 1 51.63 ? C36 GP7 1602 A 1 
HETATM 32 C C37 GP7 . . . F 4 180.331 211.099 186.147 1 51.63 ? C37 GP7 1602 A 1 
HETATM 33 C C38 GP7 . . . F 4 179.668 211.982 187.195 1 51.63 ? C38 GP7 1602 A 1 
HETATM 34 C C39 GP7 . . . F 4 180.041 211.435 188.558 1 51.63 ? C39 GP7 1602 A 1 
HETATM 35 O O3P GP7 . . . F 4 184.756 208.61 177.121 1 51.63 ? O3P GP7 1602 A 1 
HETATM 36 C C40 GP7 . . . F 4 179.957 210.139 188.712 1 51.63 ? C40 GP7 1602 A 1 
HETATM 37 C C41 GP7 . . . F 4 180.319 209.489 190.04 1 51.63 ? C41 GP7 1602 A 1 
HETATM 38 C C42 GP7 . . . F 4 180.278 207.976 189.865 1 51.63 ? C42 GP7 1602 A 1 
HETATM 39 C C43 GP7 . . . F 4 179.461 207.288 190.614 1 51.63 ? C43 GP7 1602 A 1 
HETATM 40 C C44 GP7 . . . F 4 179.403 205.788 190.463 1 51.63 ? C44 GP7 1602 A 1 
HETATM 41 C C45 GP7 . . . F 4 178.184 205.325 191.228 1 51.63 ? C45 GP7 1602 A 1 
HETATM 42 C C46 GP7 . . . F 4 178.182 203.81 191.235 1 51.63 ? C46 GP7 1602 A 1 
HETATM 43 O O4P GP7 . . . F 4 186.084 206.469 176.084 1 51.63 ? O4P GP7 1602 A 1 
HETATM 44 C C351 GP7 . . . F 4 187.442 206.136 176.11 1 51.63 ? C351 GP7 1602 A 1 
HETATM 45 C C361 GP7 . . . F 4 187.581 204.617 176.074 1 51.63 ? C361 GP7 1602 A 1 
HETATM 46 N N1 GP7 . . . F 4 188.472 204.218 175.001 1 51.63 ? N1 GP7 1602 A 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           46 
#