data_8SQ0
#
_model_server_result.job_id            BxlF3bWgJD6gfs82_bjdvQ 
_model_server_result.datetime_utc      '2024-11-29 02:24:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sq0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1602}' 
#
_entry.id    8SQ0 
#
_exptl.entry_id    8SQ0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              673.901 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SQ0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SQ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
_chem_comp.formula           'C36 H68 N O8 P' 
_chem_comp.formula_weight    673.901 
_chem_comp.id                GP7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(pentadecanoyloxy)methyl]ethyl (12E)-hexadeca-9,12-dienoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-pentadecanoyl-2-hexadecanoyl-sn-glycero-3-phosphoethanolamine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P GP7 doub 129 n n 
P O2P GP7 sing 130 n n 
P O3P GP7 sing 131 n n 
P O4P GP7 sing 132 n n 
C1 C2 GP7 sing 133 n n 
C1 O3P GP7 sing 134 n n 
C2 O2 GP7 sing 135 n n 
C2 C3 GP7 sing 136 n n 
O2 C31 GP7 sing 137 n n 
C3 O3 GP7 sing 138 n n 
O3 C11 GP7 sing 139 n n 
C11 O11 GP7 doub 140 n n 
C11 C12 GP7 sing 141 n n 
C12 C13 GP7 sing 142 n n 
C13 C14 GP7 sing 143 n n 
C14 C15 GP7 sing 144 n n 
C15 C16 GP7 sing 145 n n 
C16 C17 GP7 sing 146 n n 
C17 C18 GP7 sing 147 n n 
C18 C19 GP7 sing 148 n n 
C19 C20 GP7 sing 149 n n 
C20 C21 GP7 sing 150 n n 
C21 C22 GP7 sing 151 n n 
C22 C23 GP7 sing 152 n n 
C23 C24 GP7 sing 153 n n 
C24 C25 GP7 sing 154 n n 
C31 O31 GP7 doub 155 n n 
C31 C32 GP7 sing 156 n n 
C32 C33 GP7 sing 157 n n 
C33 C34 GP7 sing 158 n n 
C34 C35 GP7 sing 159 n n 
C35 C36 GP7 sing 160 n n 
C36 C37 GP7 sing 161 n n 
C37 C38 GP7 sing 162 n n 
C38 C39 GP7 sing 163 n n 
C39 C40 GP7 doub 164 n n 
C40 C41 GP7 sing 165 n n 
C41 C42 GP7 sing 166 n n 
C42 C43 GP7 doub 167 n n 
C43 C44 GP7 sing 168 n n 
C44 C45 GP7 sing 169 n n 
C45 C46 GP7 sing 170 n n 
O4P C351 GP7 sing 171 n n 
C351 C361 GP7 sing 172 n n 
C361 N1 GP7 sing 173 n n 
C1 H1 GP7 sing 174 n n 
C1 H1A GP7 sing 175 n n 
C2 H2 GP7 sing 176 n n 
C3 H3 GP7 sing 177 n n 
C3 H3A GP7 sing 178 n n 
C12 H12 GP7 sing 179 n n 
C12 H12A GP7 sing 180 n n 
C13 H13 GP7 sing 181 n n 
C13 H13A GP7 sing 182 n n 
C14 H14 GP7 sing 183 n n 
C14 H14A GP7 sing 184 n n 
C15 H15 GP7 sing 185 n n 
C15 H15A GP7 sing 186 n n 
C16 H16 GP7 sing 187 n n 
C16 H16A GP7 sing 188 n n 
C17 H17 GP7 sing 189 n n 
C17 H17A GP7 sing 190 n n 
C18 H18 GP7 sing 191 n n 
C18 H18A GP7 sing 192 n n 
C19 H19 GP7 sing 193 n n 
C19 H19A GP7 sing 194 n n 
C20 H20 GP7 sing 195 n n 
C20 H20A GP7 sing 196 n n 
C21 H21 GP7 sing 197 n n 
C21 H21A GP7 sing 198 n n 
C22 H22 GP7 sing 199 n n 
C22 H22A GP7 sing 200 n n 
C23 H23 GP7 sing 201 n n 
C23 H23A GP7 sing 202 n n 
C24 H24 GP7 sing 203 n n 
C24 H24A GP7 sing 204 n n 
C25 H25 GP7 sing 205 n n 
C25 H25A GP7 sing 206 n n 
C25 H25B GP7 sing 207 n n 
O2P H351 GP7 sing 208 n n 
C32 H32 GP7 sing 209 n n 
C32 H32A GP7 sing 210 n n 
C33 H33 GP7 sing 211 n n 
C33 H33A GP7 sing 212 n n 
C34 H34 GP7 sing 213 e n 
C34 H34A GP7 sing 214 n n 
C35 H35 GP7 sing 215 n n 
C35 H35A GP7 sing 216 n n 
C36 H36 GP7 sing 217 n n 
C36 H36A GP7 sing 218 n n 
C37 H37 GP7 sing 219 n n 
C37 H37A GP7 sing 220 e n 
C38 H38 GP7 sing 221 n n 
C38 H38A GP7 sing 222 n n 
C39 H39 GP7 sing 223 n n 
C40 H40 GP7 sing 224 n n 
C41 H41 GP7 sing 225 n n 
C41 H41A GP7 sing 226 n n 
C42 H42 GP7 sing 227 n n 
C43 H43 GP7 sing 228 n n 
C44 H44 GP7 sing 229 n n 
C44 H44A GP7 sing 230 n n 
C45 H45 GP7 sing 231 n n 
C45 H45A GP7 sing 232 n n 
C46 H46 GP7 sing 233 n n 
C46 H46A GP7 sing 234 n n 
C46 H46B GP7 sing 235 n n 
C351 H63 GP7 sing 236 n n 
C351 H64 GP7 sing 237 n n 
C361 H65 GP7 sing 238 n n 
C361 H66 GP7 sing 239 n n 
N1 H67 GP7 sing 240 n n 
N1 H68 GP7 sing 241 n n 
#
_atom_sites.entry_id                     8SQ0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PTY A 1 1601 1601 PTY PTY . 
F 4 GP7 A 1 1602 1602 GP7 GP7 . 
G 5 LPP A 1 1603 1603 LPP LPP . 
H 3 PTY B 1 1601 1601 PTY PTY . 
I 4 GP7 B 1 1602 1602 GP7 GP7 . 
J 5 LPP B 1 1603 1603 LPP LPP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P GP7 . . . I 4 174.87 152.444 175.86 1 51.67 ? P GP7 1602 B 1 
HETATM 2 C C1 GP7 . . . I 4 177.095 151.549 176.87 1 51.67 ? C1 GP7 1602 B 1 
HETATM 3 C C2 GP7 . . . I 4 177.621 150.604 177.943 1 51.67 ? C2 GP7 1602 B 1 
HETATM 4 O O2 GP7 . . . I 4 177.699 151.331 179.129 1 51.67 ? O2 GP7 1602 B 1 
HETATM 5 C C3 GP7 . . . I 4 179.001 150.082 177.538 1 51.67 ? C3 GP7 1602 B 1 
HETATM 6 O O3 GP7 . . . I 4 179.35 148.94 178.273 1 51.67 ? O3 GP7 1602 B 1 
HETATM 7 C C11 GP7 . . . I 4 180.376 148.188 177.694 1 51.67 ? C11 GP7 1602 B 1 
HETATM 8 O O11 GP7 . . . I 4 180.848 148.56 176.682 1 51.67 ? O11 GP7 1602 B 1 
HETATM 9 C C12 GP7 . . . I 4 180.892 146.906 178.348 1 51.67 ? C12 GP7 1602 B 1 
HETATM 10 C C13 GP7 . . . I 4 179.817 146.293 179.242 1 51.67 ? C13 GP7 1602 B 1 
HETATM 11 C C14 GP7 . . . I 4 180.084 144.81 179.483 1 51.67 ? C14 GP7 1602 B 1 
HETATM 12 C C15 GP7 . . . I 4 178.794 144.138 179.941 1 51.67 ? C15 GP7 1602 B 1 
HETATM 13 C C16 GP7 . . . I 4 178.935 142.62 179.885 1 51.67 ? C16 GP7 1602 B 1 
HETATM 14 C C17 GP7 . . . I 4 177.56 142.006 179.632 1 51.67 ? C17 GP7 1602 B 1 
HETATM 15 C C18 GP7 . . . I 4 177.586 140.488 179.81 1 51.67 ? C18 GP7 1602 B 1 
HETATM 16 C C19 GP7 . . . I 4 178.538 139.864 178.798 1 51.67 ? C19 GP7 1602 B 1 
HETATM 17 O O1P GP7 . . . I 4 173.628 151.613 175.684 1 51.67 ? O1P GP7 1602 B 1 
HETATM 18 C C20 GP7 . . . I 4 178.362 138.352 178.804 1 51.67 ? C20 GP7 1602 B 1 
HETATM 19 C C21 GP7 . . . I 4 179.695 137.67 178.528 1 51.67 ? C21 GP7 1602 B 1 
HETATM 20 C C22 GP7 . . . I 4 180.28 137.189 179.847 1 51.67 ? C22 GP7 1602 B 1 
HETATM 21 C C23 GP7 . . . I 4 181.022 135.877 179.629 1 51.67 ? C23 GP7 1602 B 1 
HETATM 22 C C24 GP7 . . . I 4 182.523 136.13 179.65 1 51.67 ? C24 GP7 1602 B 1 
HETATM 23 C C25 GP7 . . . I 4 183.255 134.822 179.921 1 51.67 ? C25 GP7 1602 B 1 
HETATM 24 O O2P GP7 . . . I 4 175.701 152.34 174.614 1 51.67 ? O2P GP7 1602 B 1 
HETATM 25 C C31 GP7 . . . I 4 177.793 150.55 180.274 1 51.67 ? C31 GP7 1602 B 1 
HETATM 26 O O31 GP7 . . . I 4 177.35 149.461 180.275 1 51.67 ? O31 GP7 1602 B 1 
HETATM 27 C C32 GP7 . . . I 4 178.477 151.079 181.523 1 51.67 ? C32 GP7 1602 B 1 
HETATM 28 C C33 GP7 . . . I 4 179.224 149.917 182.154 1 51.67 ? C33 GP7 1602 B 1 
HETATM 29 C C34 GP7 . . . I 4 179.567 150.302 183.584 1 51.67 ? C34 GP7 1602 B 1 
HETATM 30 C C35 GP7 . . . I 4 181.019 149.954 183.861 1 51.67 ? C35 GP7 1602 B 1 
HETATM 31 C C36 GP7 . . . I 4 181.272 150.097 185.354 1 51.67 ? C36 GP7 1602 B 1 
HETATM 32 C C37 GP7 . . . I 4 180.187 149.389 186.151 1 51.67 ? C37 GP7 1602 B 1 
HETATM 33 C C38 GP7 . . . I 4 180.851 148.507 187.199 1 51.67 ? C38 GP7 1602 B 1 
HETATM 34 C C39 GP7 . . . I 4 180.477 149.054 188.562 1 51.67 ? C39 GP7 1602 B 1 
HETATM 35 O O3P GP7 . . . I 4 175.759 151.873 177.124 1 51.67 ? O3P GP7 1602 B 1 
HETATM 36 C C40 GP7 . . . I 4 180.56 150.35 188.716 1 51.67 ? C40 GP7 1602 B 1 
HETATM 37 C C41 GP7 . . . I 4 180.199 151 190.043 1 51.67 ? C41 GP7 1602 B 1 
HETATM 38 C C42 GP7 . . . I 4 180.238 152.513 189.867 1 51.67 ? C42 GP7 1602 B 1 
HETATM 39 C C43 GP7 . . . I 4 181.055 153.202 190.617 1 51.67 ? C43 GP7 1602 B 1 
HETATM 40 C C44 GP7 . . . I 4 181.112 154.702 190.466 1 51.67 ? C44 GP7 1602 B 1 
HETATM 41 C C45 GP7 . . . I 4 182.33 155.166 191.23 1 51.67 ? C45 GP7 1602 B 1 
HETATM 42 C C46 GP7 . . . I 4 182.332 156.681 191.237 1 51.67 ? C46 GP7 1602 B 1 
HETATM 43 O O4P GP7 . . . I 4 174.43 154.013 176.087 1 51.67 ? O4P GP7 1602 B 1 
HETATM 44 C C351 GP7 . . . I 4 173.072 154.345 176.113 1 51.67 ? C351 GP7 1602 B 1 
HETATM 45 C C361 GP7 . . . I 4 172.932 155.864 176.076 1 51.67 ? C361 GP7 1602 B 1 
HETATM 46 N N1 GP7 . . . I 4 172.04 156.262 175.003 1 51.67 ? N1 GP7 1602 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           46 
#