data_8SQ8
#
_model_server_result.job_id            PhDBxh3X-URUlUWORxdWwg 
_model_server_result.datetime_utc      '2024-11-05 13:52:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sq8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    8SQ8 
#
_exptl.entry_id    8SQ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              422.52 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8SQ8 
_cell.length_a            70.249 
_cell.length_b            70.249 
_cell.length_c            449.106 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SQ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        151 
_symmetry.space_group_name_Hall    'P 31 2 (x,y,z+1/3)' 
_symmetry.space_group_name_H-M     'P 31 1 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,K 1 1 
B,F,G,L 2 1 
C,H,M 3 1 
D,I,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 56 A SER 80 1_555 E CAJ 4J6 . A 4J6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? 
covale ? covale2 A C PHE 58 A PHE 82 1_555 A N KCX 59 A KCX 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C KCX 59 A KCX 83 1_555 A N MET 60 A MET 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B OG SER 56 B SER 80 1_555 F CAJ 4J6 . B 4J6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale5 B C PHE 58 B PHE 82 1_555 B N KCX 59 B KCX 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 B C KCX 59 B KCX 83 1_555 B N MET 60 B MET 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 C OG SER 56 C SER 80 1_555 H CAJ 4J6 . C 4J6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? 
covale ? covale8 C C PHE 58 C PHE 82 1_555 C N KCX 59 C KCX 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 C C KCX 59 C KCX 83 1_555 C N MET 60 C MET 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 D OG SER 56 D SER 80 1_555 I CAJ 4J6 . D 4J6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? 
covale ? covale11 D C PHE 58 D PHE 82 1_555 D N KCX 59 D KCX 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale12 D C KCX 59 D KCX 83 1_555 D N MET 60 D MET 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C15 H26 N4 O6 S2' 
_chem_comp.formula_weight    422.52 
_chem_comp.id                4J6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Doripenem(open form, pyrroline tautomer form 1, SP2 connection to Thio)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAF SBA 4J6 doub 1 n n 
NAP SBA 4J6 sing 2 n n 
NAP CAL 4J6 sing 3 n n 
SBA NAC 4J6 sing 4 n n 
SBA OAG 4J6 doub 5 n n 
CAV NAO 4J6 sing 6 n n 
CAV CAL 4J6 sing 7 n n 
CAV CAM 4J6 sing 8 n n 
NAO CAK 4J6 sing 9 n n 
CAK CAW 4J6 sing 10 n n 
CAM CAW 4J6 sing 11 n n 
OAH CAR 4J6 doub 12 n n 
CAW SAQ 4J6 sing 13 n n 
CAR OAE 4J6 sing 14 n n 
CAR CAS 4J6 sing 15 n n 
SAQ CAZ 4J6 sing 16 n n 
CAS CAZ 4J6 doub 17 n n 
CAS NAN 4J6 sing 18 n n 
CAZ CAU 4J6 sing 19 n n 
NAN CAY 4J6 sing 20 n n 
CAU CAY 4J6 sing 21 n n 
CAU CAB 4J6 sing 22 n n 
CAY CAX 4J6 sing 23 n n 
CAJ CAX 4J6 sing 24 n n 
CAJ OAD 4J6 doub 25 n n 
CAX CAT 4J6 sing 26 n n 
OAI CAT 4J6 sing 27 n n 
CAT CAA 4J6 sing 28 n n 
CAA H1 4J6 sing 29 n n 
CAA H2 4J6 sing 30 n n 
CAA H3 4J6 sing 31 n n 
CAB H4 4J6 sing 32 n n 
CAB H5 4J6 sing 33 n n 
CAB H6 4J6 sing 34 n n 
NAC H7 4J6 sing 35 n n 
NAC H8 4J6 sing 36 n n 
OAE H10 4J6 sing 37 n n 
OAI H11 4J6 sing 38 n n 
CAJ H12 4J6 sing 39 n n 
CAK H14 4J6 sing 40 n n 
CAK H15 4J6 sing 41 n n 
CAL H16 4J6 sing 42 n n 
CAL H17 4J6 sing 43 n n 
CAM H18 4J6 sing 44 n n 
CAM H19 4J6 sing 45 n n 
NAN H20 4J6 sing 46 n n 
NAO H21 4J6 sing 47 n n 
NAP H23 4J6 sing 48 n n 
CAT H24 4J6 sing 49 n n 
CAU H25 4J6 sing 50 n n 
CAV H26 4J6 sing 51 n n 
CAW H27 4J6 sing 52 n n 
CAX H28 4J6 sing 53 n n 
CAY H29 4J6 sing 54 n n 
#
_atom_sites.entry_id                     8SQ8 
_atom_sites.fract_transf_matrix[1][1]    0.014235 
_atom_sites.fract_transf_matrix[1][2]    0.008219 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002227 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 4J6 A 1 301 301 4J6 4Z6 . 
F 2 4J6 B 1 301 301 4J6 4Z6 . 
G 3 BCT B 1 302 401 BCT BCT . 
H 2 4J6 C 1 301 301 4J6 4Z6 . 
I 2 4J6 D 1 301 301 4J6 4Z6 . 
J 3 BCT D 1 302 401 BCT BCT . 
K 4 HOH A 1 401 14 HOH HOH . 
K 4 HOH A 2 402 27 HOH HOH . 
K 4 HOH A 3 403 29 HOH HOH . 
K 4 HOH A 4 404 23 HOH HOH . 
K 4 HOH A 5 405 90 HOH HOH . 
K 4 HOH A 6 406 5 HOH HOH . 
K 4 HOH A 7 407 20 HOH HOH . 
K 4 HOH A 8 408 82 HOH HOH . 
K 4 HOH A 9 409 12 HOH HOH . 
K 4 HOH A 10 410 2 HOH HOH . 
K 4 HOH A 11 411 37 HOH HOH . 
K 4 HOH A 12 412 38 HOH HOH . 
K 4 HOH A 13 413 22 HOH HOH . 
K 4 HOH A 14 414 25 HOH HOH . 
K 4 HOH A 15 415 26 HOH HOH . 
K 4 HOH A 16 416 80 HOH HOH . 
K 4 HOH A 17 417 24 HOH HOH . 
K 4 HOH A 18 418 15 HOH HOH . 
K 4 HOH A 19 419 31 HOH HOH . 
K 4 HOH A 20 420 30 HOH HOH . 
K 4 HOH A 21 421 19 HOH HOH . 
K 4 HOH A 22 422 58 HOH HOH . 
K 4 HOH A 23 423 18 HOH HOH . 
K 4 HOH A 24 424 1 HOH HOH . 
K 4 HOH A 25 425 21 HOH HOH . 
K 4 HOH A 26 426 83 HOH HOH . 
L 4 HOH B 1 401 10 HOH HOH . 
L 4 HOH B 2 402 39 HOH HOH . 
L 4 HOH B 3 403 62 HOH HOH . 
L 4 HOH B 4 404 6 HOH HOH . 
L 4 HOH B 5 405 50 HOH HOH . 
L 4 HOH B 6 406 59 HOH HOH . 
L 4 HOH B 7 407 46 HOH HOH . 
L 4 HOH B 8 408 52 HOH HOH . 
L 4 HOH B 9 409 51 HOH HOH . 
L 4 HOH B 10 410 16 HOH HOH . 
L 4 HOH B 11 411 41 HOH HOH . 
L 4 HOH B 12 412 40 HOH HOH . 
L 4 HOH B 13 413 47 HOH HOH . 
L 4 HOH B 14 414 3 HOH HOH . 
L 4 HOH B 15 415 60 HOH HOH . 
L 4 HOH B 16 416 54 HOH HOH . 
L 4 HOH B 17 417 35 HOH HOH . 
L 4 HOH B 18 418 17 HOH HOH . 
L 4 HOH B 19 419 57 HOH HOH . 
L 4 HOH B 20 420 48 HOH HOH . 
L 4 HOH B 21 421 43 HOH HOH . 
L 4 HOH B 22 422 87 HOH HOH . 
L 4 HOH B 23 423 8 HOH HOH . 
L 4 HOH B 24 424 45 HOH HOH . 
L 4 HOH B 25 425 49 HOH HOH . 
L 4 HOH B 26 426 53 HOH HOH . 
L 4 HOH B 27 427 42 HOH HOH . 
L 4 HOH B 28 428 61 HOH HOH . 
L 4 HOH B 29 429 36 HOH HOH . 
M 4 HOH C 1 401 68 HOH HOH . 
M 4 HOH C 2 402 75 HOH HOH . 
M 4 HOH C 3 403 72 HOH HOH . 
M 4 HOH C 4 404 64 HOH HOH . 
M 4 HOH C 5 405 74 HOH HOH . 
M 4 HOH C 6 406 66 HOH HOH . 
M 4 HOH C 7 407 63 HOH HOH . 
M 4 HOH C 8 408 34 HOH HOH . 
M 4 HOH C 9 409 44 HOH HOH . 
M 4 HOH C 10 410 69 HOH HOH . 
M 4 HOH C 11 411 70 HOH HOH . 
M 4 HOH C 12 412 33 HOH HOH . 
M 4 HOH C 13 413 67 HOH HOH . 
M 4 HOH C 14 414 65 HOH HOH . 
M 4 HOH C 15 415 7 HOH HOH . 
M 4 HOH C 16 416 73 HOH HOH . 
M 4 HOH C 17 417 71 HOH HOH . 
M 4 HOH C 18 418 32 HOH HOH . 
N 4 HOH D 1 401 89 HOH HOH . 
N 4 HOH D 2 402 84 HOH HOH . 
N 4 HOH D 3 403 81 HOH HOH . 
N 4 HOH D 4 404 13 HOH HOH . 
N 4 HOH D 5 405 86 HOH HOH . 
N 4 HOH D 6 406 4 HOH HOH . 
N 4 HOH D 7 407 11 HOH HOH . 
N 4 HOH D 8 408 78 HOH HOH . 
N 4 HOH D 9 409 85 HOH HOH . 
N 4 HOH D 10 410 9 HOH HOH . 
N 4 HOH D 11 411 76 HOH HOH . 
N 4 HOH D 12 412 56 HOH HOH . 
N 4 HOH D 13 413 88 HOH HOH . 
N 4 HOH D 14 414 79 HOH HOH . 
N 4 HOH D 15 415 55 HOH HOH . 
N 4 HOH D 16 416 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 4J6 . . . F 2 -21.816 -8.936 61.095 1 52.18 ? CAA 4J6 301 B 1 
HETATM 2 C CAB 4J6 . . . F 2 -25.392 -8.732 61.074 1 50.7 ? CAB 4J6 301 B 1 
HETATM 3 N NAC 4J6 . . . F 2 -32.775 -11.293 60.997 1 66.84 ? NAC 4J6 301 B 1 
HETATM 4 O OAD 4J6 . . . F 2 -23.695 -6.432 57.963 1 43.14 ? OAD 4J6 301 B 1 
HETATM 5 O OAE 4J6 . . . F 2 -28.658 -9.836 56.922 1 47.85 ? OAE 4J6 301 B 1 
HETATM 6 O OAF 4J6 . . . F 2 -33.882 -10.12 59.096 1 72.38 ? OAF 4J6 301 B 1 
HETATM 7 O OAG 4J6 . . . F 2 -31.569 -9.857 59.357 1 72.76 ? OAG 4J6 301 B 1 
HETATM 8 O OAH 4J6 . . . F 2 -28.079 -7.752 57.297 1 49.55 ? OAH 4J6 301 B 1 
HETATM 9 O OAI 4J6 . . . F 2 -21.961 -10.495 59.293 1 50.58 ? OAI 4J6 301 B 1 
HETATM 10 C CAJ 4J6 . . . F 2 -23.267 -7.573 57.979 1 44.9 ? CAJ 4J6 301 B 1 
HETATM 11 C CAK 4J6 . . . F 2 -27.955 -12.625 58.528 1 56.32 ? CAK 4J6 301 B 1 
HETATM 12 C CAL 4J6 . . . F 2 -31.011 -12.082 58.084 1 54.99 ? CAL 4J6 301 B 1 
HETATM 13 C CAM 4J6 . . . F 2 -29.725 -12.548 60.187 1 59.95 ? CAM 4J6 301 B 1 
HETATM 14 N NAN 4J6 . . . F 2 -25.374 -9.197 57.828 1 48.13 ? NAN 4J6 301 B 1 
HETATM 15 N NAO 4J6 . . . F 2 -29.046 -13.528 58.117 1 54.48 ? NAO 4J6 301 B 1 
HETATM 16 N NAP 4J6 . . . F 2 -32.421 -12.04 58.505 1 47.03 ? NAP 4J6 301 B 1 
HETATM 17 S SAQ 4J6 . . . F 2 -28.118 -10.409 60.098 1 67.28 ? SAQ 4J6 301 B 1 
HETATM 18 C CAR 4J6 . . . F 2 -27.826 -8.937 57.446 1 46.22 ? CAR 4J6 301 B 1 
HETATM 19 C CAS 4J6 . . . F 2 -26.641 -9.339 58.207 1 44.67 ? CAS 4J6 301 B 1 
HETATM 20 C CAT 4J6 . . . F 2 -22.042 -9.094 59.599 1 50.09 ? CAT 4J6 301 B 1 
HETATM 21 C CAU 4J6 . . . F 2 -25.369 -9.866 60.074 1 52.74 ? CAU 4J6 301 B 1 
HETATM 22 C CAV 4J6 . . . F 2 -30.243 -13.131 58.88 1 47.58 ? CAV 4J6 301 B 1 
HETATM 23 C CAW 4J6 . . . F 2 -28.276 -12.16 59.943 1 55.91 ? CAW 4J6 301 B 1 
HETATM 24 C CAX 4J6 . . . F 2 -23.396 -8.499 59.185 1 50.05 ? CAX 4J6 301 B 1 
HETATM 25 C CAY 4J6 . . . F 2 -24.449 -9.569 58.896 1 48.28 ? CAY 4J6 301 B 1 
HETATM 26 C CAZ 4J6 . . . F 2 -26.704 -9.859 59.415 1 48.35 ? CAZ 4J6 301 B 1 
HETATM 27 S SBA 4J6 . . . F 2 -32.664 -10.779 59.476 1 87.11 ? SBA 4J6 301 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#