data_8SQQ # _model_server_result.job_id PELxDmUVSopv8egn86pvBg _model_server_result.datetime_utc '2025-07-05 16:53:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 8SQQ # _exptl.entry_id 8SQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SQQ _cell.length_a 171.516 _cell.length_b 171.516 _cell.length_c 171.516 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 56 A MET 52 1_555 F FE HEM . A HEM 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A SD MET 56 A MET 52 1_555 F FE HEM . A HEM 205 13_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8SQQ _atom_sites.fract_transf_matrix[1][1] 0.00583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 2 CL CL . C 2 CL A 1 202 3 CL CL . D 3 SO4 A 1 203 2 SO4 SO4 . E 3 SO4 A 1 204 3 SO4 SO4 . F 4 HEM A 1 205 1 HEM HEM . G 5 HOH A 1 301 14 HOH HOH . G 5 HOH A 2 302 16 HOH HOH . G 5 HOH A 3 303 24 HOH HOH . G 5 HOH A 4 304 2 HOH HOH . G 5 HOH A 5 305 21 HOH HOH . G 5 HOH A 6 306 25 HOH HOH . G 5 HOH A 7 307 27 HOH HOH . G 5 HOH A 8 308 15 HOH HOH . G 5 HOH A 9 309 9 HOH HOH . G 5 HOH A 10 310 19 HOH HOH . G 5 HOH A 11 311 6 HOH HOH . G 5 HOH A 12 312 29 HOH HOH . G 5 HOH A 13 313 18 HOH HOH . G 5 HOH A 14 314 1 HOH HOH . G 5 HOH A 15 315 12 HOH HOH . G 5 HOH A 16 316 5 HOH HOH . G 5 HOH A 17 317 8 HOH HOH . G 5 HOH A 18 318 23 HOH HOH . G 5 HOH A 19 319 11 HOH HOH . G 5 HOH A 20 320 3 HOH HOH . G 5 HOH A 21 321 17 HOH HOH . G 5 HOH A 22 322 7 HOH HOH . G 5 HOH A 23 323 26 HOH HOH . G 5 HOH A 24 324 20 HOH HOH . G 5 HOH A 25 325 13 HOH HOH . G 5 HOH A 26 326 4 HOH HOH . G 5 HOH A 27 327 10 HOH HOH . G 5 HOH A 28 328 22 HOH HOH . G 5 HOH A 29 329 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . F 4 27.494 27.06 0.198 0.5 46.44 ? CHA HEM 205 A 1 HETATM 2 C CHB HEM . . . F 4 28.02 31.192 2.621 0.5 44.63 ? CHB HEM 205 A 1 HETATM 3 C CHC HEM . . . F 4 32.146 32.049 0.213 0.5 41.79 ? CHC HEM 205 A 1 HETATM 4 C CHD HEM . . . F 4 31.167 28.267 -2.682 0.5 44.52 ? CHD HEM 205 A 1 HETATM 5 C C1A HEM . . . F 4 27.303 28.068 1.096 0.5 45.69 ? C1A HEM 205 A 1 HETATM 6 C C2A HEM . . . F 4 26.277 28.095 2.105 0.5 49.36 ? C2A HEM 205 A 1 HETATM 7 C C3A HEM . . . F 4 26.415 29.227 2.785 0.5 46.07 ? C3A HEM 205 A 1 HETATM 8 C C4A HEM . . . F 4 27.538 29.964 2.226 0.5 46.82 ? C4A HEM 205 A 1 HETATM 9 C CMA HEM . . . F 4 25.52 29.666 3.958 0.5 50.78 ? CMA HEM 205 A 1 HETATM 10 C CAA HEM . . . F 4 25.203 27.017 2.352 0.5 51.69 ? CAA HEM 205 A 1 HETATM 11 C CBA HEM . . . F 4 25.804 25.624 2.507 0.5 53.9 ? CBA HEM 205 A 1 HETATM 12 C CGA HEM . . . F 4 24.681 24.654 2.761 0.5 56.64 ? CGA HEM 205 A 1 HETATM 13 O O1A HEM . . . F 4 23.879 24.413 1.804 0.5 57.68 ? O1A HEM 205 A 1 HETATM 14 O O2A HEM . . . F 4 24.618 24.15 3.922 0.5 56.06 ? O2A HEM 205 A 1 HETATM 15 C C1B HEM . . . F 4 29.157 31.803 2.15 0.5 44.19 ? C1B HEM 205 A 1 HETATM 16 C C2B HEM . . . F 4 29.634 33.109 2.548 0.5 43.9 ? C2B HEM 205 A 1 HETATM 17 C C3B HEM . . . F 4 30.772 33.355 1.904 0.5 42.76 ? C3B HEM 205 A 1 HETATM 18 C C4B HEM . . . F 4 31.061 32.212 1.051 0.5 42.58 ? C4B HEM 205 A 1 HETATM 19 C CMB HEM . . . F 4 28.927 34.025 3.563 0.5 42.71 ? CMB HEM 205 A 1 HETATM 20 C CAB HEM . . . F 4 31.606 34.641 2.018 0.5 41.87 ? CAB HEM 205 A 1 HETATM 21 C CBB HEM . . . F 4 31.091 35.74 2.559 0.5 40.93 ? CBB HEM 205 A 1 HETATM 22 C C1C HEM . . . F 4 32.255 31.115 -0.794 0.5 42.55 ? C1C HEM 205 A 1 HETATM 23 C C2C HEM . . . F 4 33.309 31.032 -1.79 0.5 42.69 ? C2C HEM 205 A 1 HETATM 24 C C3C HEM . . . F 4 33.042 30.011 -2.588 0.5 43.7 ? C3C HEM 205 A 1 HETATM 25 C C4C HEM . . . F 4 31.808 29.367 -2.132 0.5 44.26 ? C4C HEM 205 A 1 HETATM 26 C CMC HEM . . . F 4 34.537 31.95 -1.941 0.5 41.97 ? CMC HEM 205 A 1 HETATM 27 C CAC HEM . . . F 4 33.957 29.636 -3.767 0.5 41.38 ? CAC HEM 205 A 1 HETATM 28 C CBC HEM . . . F 4 33.471 28.918 -4.78 0.5 43.94 ? CBC HEM 205 A 1 HETATM 29 C C1D HEM . . . F 4 30.053 27.608 -2.182 0.5 45.97 ? C1D HEM 205 A 1 HETATM 30 C C2D HEM . . . F 4 29.363 26.441 -2.744 0.5 51.27 ? C2D HEM 205 A 1 HETATM 31 C C3D HEM . . . F 4 28.344 26.11 -1.931 0.5 49.38 ? C3D HEM 205 A 1 HETATM 32 C C4D HEM . . . F 4 28.379 27.057 -0.841 0.5 45.77 ? C4D HEM 205 A 1 HETATM 33 C CMD HEM . . . F 4 29.768 25.736 -4.056 0.5 50.52 ? CMD HEM 205 A 1 HETATM 34 C CAD HEM . . . F 4 27.295 24.957 -1.995 0.5 51.16 ? CAD HEM 205 A 1 HETATM 35 C CBD HEM . . . F 4 26.796 24.541 -3.38 0.5 56.33 ? CBD HEM 205 A 1 HETATM 36 C CGD HEM . . . F 4 26.083 23.204 -3.29 0.5 56.07 ? CGD HEM 205 A 1 HETATM 37 O O1D HEM . . . F 4 25.835 22.74 -2.134 0.5 53.39 ? O1D HEM 205 A 1 HETATM 38 O O2D HEM . . . F 4 25.775 22.611 -4.37 0.5 52.19 ? O2D HEM 205 A 1 HETATM 39 N NA HEM . . . F 4 28.052 29.222 1.196 0.5 45.92 ? NA HEM 205 A 1 HETATM 40 N NB HEM . . . F 4 30.053 31.288 1.239 0.5 44.36 ? NB HEM 205 A 1 HETATM 41 N NC HEM . . . F 4 31.368 30.085 -1.035 0.5 44.34 ? NC HEM 205 A 1 HETATM 42 N ND HEM . . . F 4 29.417 27.946 -1.016 0.5 45.87 ? ND HEM 205 A 1 HETATM 43 FE FE HEM . . . F 4 29.819 29.686 0.164 0.5 38.67 ? FE HEM 205 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #