data_8SR5 # _model_server_result.job_id ox6gh7C-6E3hBrJ4AhC7Fg _model_server_result.datetime_utc '2024-12-27 09:10:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":502}' # _entry.id 8SR5 # _exptl.entry_id 8SR5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 63.546 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SR5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N HIS 33 A HIS 33 1_555 J CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc2 A ND1 HIS 33 A HIS 33 1_555 J CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc3 A ND1 HIS 48 A HIS 48 1_555 K CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc4 A ND1 HIS 72 A HIS 72 1_555 K CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc5 A ND1 HIS 137 A HIS 137 1_555 J CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc6 A NE2 HIS 139 A HIS 139 1_555 J CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc7 A OE1 GLN 404 A GLN 404 1_555 K CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 C N HIS 33 E HIS 33 1_555 L CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc9 C ND1 HIS 33 E HIS 33 1_555 L CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc10 C ND1 HIS 48 E HIS 48 1_555 M CU CU . E CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc11 C ND1 HIS 72 E HIS 72 1_555 M CU CU . E CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc12 C ND1 HIS 137 E HIS 137 1_555 L CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc13 C NE2 HIS 139 E HIS 139 1_555 L CU CU . E CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc14 C OE1 GLN 404 E GLN 404 1_555 M CU CU . E CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc15 D N HIS 33 I HIS 33 1_555 N CU CU . I CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc16 D ND1 HIS 33 I HIS 33 1_555 N CU CU . I CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc17 D ND1 HIS 48 I HIS 48 1_555 O CU CU . I CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc18 D ND1 HIS 72 I HIS 72 1_555 O CU CU . I CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc19 D ND1 HIS 137 I HIS 137 1_555 N CU CU . I CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc20 D NE2 HIS 139 I HIS 139 1_555 N CU CU . I CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc21 D OE1 GLN 404 I GLN 404 1_555 O CU CU . I CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8SR5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 CU A 1 501 415 CU CU . K 4 CU A 1 502 416 CU CU . L 4 CU E 1 501 415 CU CU . M 4 CU E 1 502 416 CU CU . N 4 CU I 1 501 415 CU CU . O 4 CU I 1 502 416 CU CU . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x 140.863 _atom_site.Cartn_y 152.814 _atom_site.Cartn_z 101.54 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 87.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 502 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #