data_8SR9 # _model_server_result.job_id 2LmTYYbp9xiQ9k9v88SVwA _model_server_result.datetime_utc '2024-12-27 16:07:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sr9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":3003}' # _entry.id 8SR9 # _exptl.entry_id 8SR9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SR9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 997 A CYS 997 1_555 A SG CYS 1006 A CYS 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 997 B CYS 997 1_555 B SG CYS 1006 B CYS 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 997 C CYS 997 1_555 C SG CYS 1006 C CYS 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 997 D CYS 997 1_555 D SG CYS 1006 D CYS 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O TRP 620 A TRP 620 1_555 F MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 A O LEU 621 A LEU 621 1_555 F MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc3 A O GLY 623 A GLY 623 1_555 F MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc4 A OE1 GLN 853 A GLN 853 1_555 E MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc5 A OD1 ASN 869 A ASN 869 1_555 E MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc6 B O TRP 620 B TRP 620 1_555 K MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc7 B O LEU 621 B LEU 621 1_555 K MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc8 B O GLY 623 B GLY 623 1_555 K MG MG . B MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc9 B OE1 GLN 853 B GLN 853 1_555 J MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc10 B OD1 ASN 869 B ASN 869 1_555 J MG MG . B MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc11 C O TRP 620 C TRP 620 1_555 P MG MG . C MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc12 C O LEU 621 C LEU 621 1_555 P MG MG . C MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc13 C O GLY 623 C GLY 623 1_555 P MG MG . C MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc14 C OE1 GLN 853 C GLN 853 1_555 O MG MG . C MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc15 C OD1 ASN 869 C ASN 869 1_555 O MG MG . C MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc16 D O TRP 620 D TRP 620 1_555 W MG MG . D MG 6004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc17 D O LEU 621 D LEU 621 1_555 W MG MG . D MG 6004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc18 D O GLY 623 D GLY 623 1_555 W MG MG . D MG 6004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc19 D OE1 GLN 853 D GLN 853 1_555 V MG MG . D MG 6003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc20 D OD1 ASN 869 D ASN 869 1_555 V MG MG . D MG 6003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8SR9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 3001 3001 MG MG . F 2 MG A 1 3002 3002 MG MG . G 3 CLR A 1 3003 6003 CLR CLR . H 3 CLR A 1 3004 6001 CLR CLR . I 3 CLR A 1 3005 6002 CLR CLR . J 2 MG B 1 3001 3001 MG MG . K 2 MG B 1 3002 3002 MG MG . L 3 CLR B 1 3003 6003 CLR CLR . M 3 CLR B 1 3004 6001 CLR CLR . N 3 CLR B 1 3005 6002 CLR CLR . O 2 MG C 1 3001 3001 MG MG . P 2 MG C 1 3002 3002 MG MG . Q 3 CLR C 1 3003 6003 CLR CLR . R 3 CLR C 1 3004 6001 CLR CLR . S 3 CLR C 1 3005 6002 CLR CLR . T 3 CLR D 1 6001 6001 CLR CLR . U 3 CLR D 1 6002 6002 CLR CLR . V 2 MG D 1 6003 3001 MG MG . W 2 MG D 1 6004 3002 MG MG . X 3 CLR D 1 6005 6003 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 3 185.518 150.975 131.787 1 134.34 ? C1 CLR 3003 A 1 HETATM 2 C C2 CLR . . . G 3 185.145 151.114 130.31 1 135.91 ? C2 CLR 3003 A 1 HETATM 3 C C3 CLR . . . G 3 184.015 150.187 129.945 1 135.04 ? C3 CLR 3003 A 1 HETATM 4 C C4 CLR . . . G 3 182.813 150.535 130.797 1 135.42 ? C4 CLR 3003 A 1 HETATM 5 C C5 CLR . . . G 3 183.135 150.428 132.271 1 137.75 ? C5 CLR 3003 A 1 HETATM 6 C C6 CLR . . . G 3 182.399 149.672 133.071 1 137.75 ? C6 CLR 3003 A 1 HETATM 7 C C7 CLR . . . G 3 182.501 149.639 134.563 1 136.9 ? C7 CLR 3003 A 1 HETATM 8 C C8 CLR . . . G 3 183.54 150.606 135.124 1 138.66 ? C8 CLR 3003 A 1 HETATM 9 C C9 CLR . . . G 3 184.746 150.7 134.171 1 137.72 ? C9 CLR 3003 A 1 HETATM 10 C C10 CLR . . . G 3 184.344 151.215 132.762 1 136.95 ? C10 CLR 3003 A 1 HETATM 11 C C11 CLR . . . G 3 185.904 151.492 134.795 1 134.03 ? C11 CLR 3003 A 1 HETATM 12 C C12 CLR . . . G 3 186.316 150.958 136.17 1 133.87 ? C12 CLR 3003 A 1 HETATM 13 C C13 CLR . . . G 3 185.135 150.943 137.143 1 133.92 ? C13 CLR 3003 A 1 HETATM 14 C C14 CLR . . . G 3 184.011 150.12 136.487 1 138.21 ? C14 CLR 3003 A 1 HETATM 15 C C15 CLR . . . G 3 182.983 149.947 137.602 1 137.93 ? C15 CLR 3003 A 1 HETATM 16 C C16 CLR . . . G 3 183.833 149.878 138.887 1 136.55 ? C16 CLR 3003 A 1 HETATM 17 C C17 CLR . . . G 3 185.302 150.128 138.456 1 134.69 ? C17 CLR 3003 A 1 HETATM 18 C C18 CLR . . . G 3 184.682 152.369 137.476 1 134.12 ? C18 CLR 3003 A 1 HETATM 19 C C19 CLR . . . G 3 183.979 152.71 132.769 1 133.81 ? C19 CLR 3003 A 1 HETATM 20 C C20 CLR . . . G 3 186.165 150.683 139.6 1 133.69 ? C20 CLR 3003 A 1 HETATM 21 C C21 CLR . . . G 3 187.563 150.078 139.634 1 135.24 ? C21 CLR 3003 A 1 HETATM 22 C C22 CLR . . . G 3 185.468 150.491 140.954 1 132.97 ? C22 CLR 3003 A 1 HETATM 23 C C23 CLR . . . G 3 186.032 151.324 142.077 1 135.71 ? C23 CLR 3003 A 1 HETATM 24 C C24 CLR . . . G 3 185.515 150.926 143.434 1 136.33 ? C24 CLR 3003 A 1 HETATM 25 C C25 CLR . . . G 3 185.928 151.837 144.592 1 136.9 ? C25 CLR 3003 A 1 HETATM 26 C C26 CLR . . . G 3 185.709 151.161 145.936 1 135.35 ? C26 CLR 3003 A 1 HETATM 27 C C27 CLR . . . G 3 187.369 152.297 144.457 1 133.48 ? C27 CLR 3003 A 1 HETATM 28 O O1 CLR . . . G 3 183.695 150.32 128.555 1 134.11 ? O1 CLR 3003 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 110 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #