data_8SRK # _model_server_result.job_id PmvwCI6ez2wZgyt7x868mQ _model_server_result.datetime_utc '2024-12-26 19:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8srk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1702}' # _entry.id 8SRK # _exptl.entry_id 8SRK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SRK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 L N N ? 3 M N N ? 3 R N N ? 3 S N N ? 3 Z N N ? 3 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 997 A CYS 997 1_555 A SG CYS 1006 A CYS 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 997 B CYS 997 1_555 B SG CYS 1006 B CYS 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 997 C CYS 997 1_555 C SG CYS 1006 C CYS 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 997 D CYS 997 1_555 D SG CYS 1006 D CYS 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A O LEU 621 A LEU 621 1_555 G CA CA . A CA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc2 A O GLY 623 A GLY 623 1_555 G CA CA . A CA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc3 A OD1 ASN 869 A ASN 869 1_555 F CA CA . A CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc4 B O LEU 621 B LEU 621 1_555 M CA CA . B CA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc5 B O GLY 623 B GLY 623 1_555 M CA CA . B CA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc6 B OD1 ASN 869 B ASN 869 1_555 L CA CA . B CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc7 C O LEU 621 C LEU 621 1_555 S CA CA . C CA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc8 C O GLY 623 C GLY 623 1_555 S CA CA . C CA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc9 C OD1 ASN 869 C ASN 869 1_555 R CA CA . C CA 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc10 D O LEU 621 D LEU 621 1_555 AA CA CA . D CA 6005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc11 D O GLY 623 D GLY 623 1_555 AA CA CA . D CA 6005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc12 D OD1 ASN 869 D ASN 869 1_555 Z CA CA . D CA 6004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8SRK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 APR A 1 1701 1701 APR APR . F 3 CA A 1 1702 3001 CA CA . G 3 CA A 1 1703 3002 CA CA . H 4 CLR A 1 1704 6003 CLR CLR . I 4 CLR A 1 1705 6001 CLR CLR . J 4 CLR A 1 1706 6002 CLR CLR . K 2 APR B 1 1701 1701 APR APR . L 3 CA B 1 1702 3001 CA CA . M 3 CA B 1 1703 3002 CA CA . N 4 CLR B 1 1704 6003 CLR CLR . O 4 CLR B 1 1705 6001 CLR CLR . P 4 CLR B 1 1706 6002 CLR CLR . Q 2 APR C 1 1701 1701 APR APR . R 3 CA C 1 1702 3001 CA CA . S 3 CA C 1 1703 3002 CA CA . T 4 CLR C 1 1704 6003 CLR CLR . U 4 CLR C 1 1705 6001 CLR CLR . V 4 CLR C 1 1706 6002 CLR CLR . W 4 CLR D 1 6001 6001 CLR CLR . X 4 CLR D 1 6002 6002 CLR CLR . Y 2 APR D 1 6003 1701 APR APR . Z 3 CA D 1 6004 3001 CA CA . AA 3 CA D 1 6005 3002 CA CA . BA 4 CLR D 1 6006 6003 CLR CLR . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 161.832 _atom_site.Cartn_y 209.984 _atom_site.Cartn_z 194.817 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1702 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #