data_8SRX # _model_server_result.job_id 1h4LwoXNWbAQizhfwHhqJA _model_server_result.datetime_utc '2024-11-26 12:14:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8srx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":203}' # _entry.id 8SRX # _exptl.entry_id 8SRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.76 _cell.angle_gamma 90 _cell.entry_id 8SRX _cell.length_a 158.166 _cell.length_b 45.562 _cell.length_c 43.714 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 35 A GLN 98 1_555 G NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 A ND1 HIS 78 A HIS 141 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A ND1 HIS 82 A HIS 145 1_555 F ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc4 F ZN ZN . A ZN 202 1_555 P O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc5 J NA NA . B NA 203 1_555 Q O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8SRX _atom_sites.fract_transf_matrix[1][1] 0.006322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001316 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 K6G A 1 201 2 K6G LYP . F 4 ZN A 1 202 2 ZN ZN . G 5 NA A 1 203 2 NA NA . H 3 K6G B 1 201 1 K6G LYP . I 6 PEG B 1 202 2 PEG PEG . J 5 NA B 1 203 1 NA NA . K 3 K6G D 1 201 3 K6G LYP . L 6 PEG D 1 202 4 PEG PEG . M 7 EDO D 1 203 2 EDO EDO . N 7 EDO D 1 204 3 EDO EDO . O 8 CL D 1 205 1 CL CL . P 9 HOH A 1 301 47 HOH HOH . P 9 HOH A 2 302 53 HOH HOH . P 9 HOH A 3 303 25 HOH HOH . P 9 HOH A 4 304 2 HOH HOH . P 9 HOH A 5 305 84 HOH HOH . P 9 HOH A 6 306 1 HOH HOH . P 9 HOH A 7 307 88 HOH HOH . P 9 HOH A 8 308 45 HOH HOH . P 9 HOH A 9 309 116 HOH HOH . P 9 HOH A 10 310 78 HOH HOH . P 9 HOH A 11 311 33 HOH HOH . P 9 HOH A 12 312 118 HOH HOH . P 9 HOH A 13 313 3 HOH HOH . P 9 HOH A 14 314 50 HOH HOH . P 9 HOH A 15 315 36 HOH HOH . P 9 HOH A 16 316 83 HOH HOH . P 9 HOH A 17 317 62 HOH HOH . P 9 HOH A 18 318 13 HOH HOH . P 9 HOH A 19 319 112 HOH HOH . P 9 HOH A 20 320 69 HOH HOH . P 9 HOH A 21 321 75 HOH HOH . P 9 HOH A 22 322 91 HOH HOH . P 9 HOH A 23 323 22 HOH HOH . P 9 HOH A 24 324 19 HOH HOH . P 9 HOH A 25 325 48 HOH HOH . P 9 HOH A 26 326 42 HOH HOH . P 9 HOH A 27 327 24 HOH HOH . P 9 HOH A 28 328 58 HOH HOH . P 9 HOH A 29 329 40 HOH HOH . P 9 HOH A 30 330 20 HOH HOH . P 9 HOH A 31 331 110 HOH HOH . P 9 HOH A 32 332 65 HOH HOH . P 9 HOH A 33 333 31 HOH HOH . Q 9 HOH B 1 301 102 HOH HOH . Q 9 HOH B 2 302 66 HOH HOH . Q 9 HOH B 3 303 108 HOH HOH . Q 9 HOH B 4 304 16 HOH HOH . Q 9 HOH B 5 305 27 HOH HOH . Q 9 HOH B 6 306 85 HOH HOH . Q 9 HOH B 7 307 38 HOH HOH . Q 9 HOH B 8 308 7 HOH HOH . Q 9 HOH B 9 309 6 HOH HOH . Q 9 HOH B 10 310 30 HOH HOH . Q 9 HOH B 11 311 87 HOH HOH . Q 9 HOH B 12 312 28 HOH HOH . Q 9 HOH B 13 313 114 HOH HOH . Q 9 HOH B 14 314 74 HOH HOH . Q 9 HOH B 15 315 95 HOH HOH . Q 9 HOH B 16 316 60 HOH HOH . Q 9 HOH B 17 317 81 HOH HOH . Q 9 HOH B 18 318 32 HOH HOH . Q 9 HOH B 19 319 113 HOH HOH . Q 9 HOH B 20 320 37 HOH HOH . Q 9 HOH B 21 321 82 HOH HOH . Q 9 HOH B 22 322 39 HOH HOH . Q 9 HOH B 23 323 80 HOH HOH . Q 9 HOH B 24 324 105 HOH HOH . Q 9 HOH B 25 325 98 HOH HOH . Q 9 HOH B 26 326 72 HOH HOH . Q 9 HOH B 27 327 67 HOH HOH . Q 9 HOH B 28 328 43 HOH HOH . Q 9 HOH B 29 329 111 HOH HOH . Q 9 HOH B 30 330 46 HOH HOH . Q 9 HOH B 31 331 63 HOH HOH . Q 9 HOH B 32 332 107 HOH HOH . R 9 HOH C 1 201 15 HOH HOH . R 9 HOH C 2 202 101 HOH HOH . R 9 HOH C 3 203 94 HOH HOH . R 9 HOH C 4 204 109 HOH HOH . R 9 HOH C 5 205 54 HOH HOH . R 9 HOH C 6 206 104 HOH HOH . R 9 HOH C 7 207 76 HOH HOH . R 9 HOH C 8 208 35 HOH HOH . R 9 HOH C 9 209 77 HOH HOH . R 9 HOH C 10 210 71 HOH HOH . R 9 HOH C 11 211 56 HOH HOH . R 9 HOH C 12 212 68 HOH HOH . R 9 HOH C 13 213 8 HOH HOH . R 9 HOH C 14 214 100 HOH HOH . R 9 HOH C 15 215 29 HOH HOH . R 9 HOH C 16 216 117 HOH HOH . R 9 HOH C 17 217 79 HOH HOH . R 9 HOH C 18 218 90 HOH HOH . R 9 HOH C 19 219 97 HOH HOH . R 9 HOH C 20 220 73 HOH HOH . R 9 HOH C 21 221 115 HOH HOH . S 9 HOH D 1 301 64 HOH HOH . S 9 HOH D 2 302 51 HOH HOH . S 9 HOH D 3 303 4 HOH HOH . S 9 HOH D 4 304 34 HOH HOH . S 9 HOH D 5 305 11 HOH HOH . S 9 HOH D 6 306 57 HOH HOH . S 9 HOH D 7 307 52 HOH HOH . S 9 HOH D 8 308 12 HOH HOH . S 9 HOH D 9 309 5 HOH HOH . S 9 HOH D 10 310 17 HOH HOH . S 9 HOH D 11 311 26 HOH HOH . S 9 HOH D 12 312 59 HOH HOH . S 9 HOH D 13 313 18 HOH HOH . S 9 HOH D 14 314 21 HOH HOH . S 9 HOH D 15 315 14 HOH HOH . S 9 HOH D 16 316 9 HOH HOH . S 9 HOH D 17 317 10 HOH HOH . S 9 HOH D 18 318 93 HOH HOH . S 9 HOH D 19 319 70 HOH HOH . S 9 HOH D 20 320 49 HOH HOH . S 9 HOH D 21 321 41 HOH HOH . S 9 HOH D 22 322 106 HOH HOH . S 9 HOH D 23 323 23 HOH HOH . S 9 HOH D 24 324 103 HOH HOH . S 9 HOH D 25 325 96 HOH HOH . S 9 HOH D 26 326 89 HOH HOH . S 9 HOH D 27 327 61 HOH HOH . S 9 HOH D 28 328 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . M 7 -12.386 -27.414 1.973 1 28.07 ? C1 EDO 203 D 1 HETATM 2 O O1 EDO . . . M 7 -11.939 -26.953 3.253 1 49.41 ? O1 EDO 203 D 1 HETATM 3 C C2 EDO . . . M 7 -11.772 -28.776 1.685 1 31.67 ? C2 EDO 203 D 1 HETATM 4 O O2 EDO . . . M 7 -12.457 -29.387 0.585 1 32.57 ? O2 EDO 203 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #