data_8SS0 # _model_server_result.job_id iKp4sfoFuXhpFyWqFX999g _model_server_result.datetime_utc '2024-11-23 22:42:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ss0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 8SS0 # _exptl.entry_id 8SS0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8SS0 _cell.length_a 145.803 _cell.length_b 145.803 _cell.length_c 261.161 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SS0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 400 A CYS 449 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 B SG CYS 400 B CYS 449 1_555 E FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8SS0 _atom_sites.fract_transf_matrix[1][1] 0.006859 _atom_sites.fract_transf_matrix[1][2] 0.00396 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 601 HEM HEM . D 3 WQR A 1 602 602 WQR WQR . E 2 HEM B 1 601 601 HEM HEM . F 3 WQR B 1 602 602 WQR WQR . G 4 HOH A 1 701 701 HOH HOH . G 4 HOH A 2 702 702 HOH HOH . G 4 HOH A 3 703 703 HOH HOH . G 4 HOH A 4 704 704 HOH HOH . G 4 HOH A 5 705 705 HOH HOH . G 4 HOH A 6 706 706 HOH HOH . G 4 HOH A 7 707 707 HOH HOH . G 4 HOH A 8 708 708 HOH HOH . G 4 HOH A 9 709 709 HOH HOH . G 4 HOH A 10 710 710 HOH HOH . G 4 HOH A 11 711 711 HOH HOH . G 4 HOH A 12 712 712 HOH HOH . G 4 HOH A 13 713 713 HOH HOH . G 4 HOH A 14 714 714 HOH HOH . G 4 HOH A 15 715 715 HOH HOH . G 4 HOH A 16 716 716 HOH HOH . G 4 HOH A 17 717 717 HOH HOH . G 4 HOH A 18 718 718 HOH HOH . G 4 HOH A 19 719 719 HOH HOH . G 4 HOH A 20 720 720 HOH HOH . G 4 HOH A 21 721 721 HOH HOH . G 4 HOH A 22 722 722 HOH HOH . G 4 HOH A 23 723 723 HOH HOH . G 4 HOH A 24 724 724 HOH HOH . G 4 HOH A 25 725 725 HOH HOH . G 4 HOH A 26 726 726 HOH HOH . G 4 HOH A 27 727 727 HOH HOH . G 4 HOH A 28 728 728 HOH HOH . G 4 HOH A 29 729 729 HOH HOH . G 4 HOH A 30 730 730 HOH HOH . G 4 HOH A 31 731 731 HOH HOH . G 4 HOH A 32 732 732 HOH HOH . G 4 HOH A 33 733 733 HOH HOH . G 4 HOH A 34 734 734 HOH HOH . G 4 HOH A 35 735 735 HOH HOH . G 4 HOH A 36 736 736 HOH HOH . G 4 HOH A 37 737 737 HOH HOH . G 4 HOH A 38 738 738 HOH HOH . G 4 HOH A 39 739 739 HOH HOH . G 4 HOH A 40 740 740 HOH HOH . G 4 HOH A 41 741 741 HOH HOH . G 4 HOH A 42 742 742 HOH HOH . G 4 HOH A 43 743 743 HOH HOH . G 4 HOH A 44 744 744 HOH HOH . G 4 HOH A 45 745 745 HOH HOH . H 4 HOH B 1 701 701 HOH HOH . H 4 HOH B 2 702 702 HOH HOH . H 4 HOH B 3 703 703 HOH HOH . H 4 HOH B 4 704 704 HOH HOH . H 4 HOH B 5 705 705 HOH HOH . H 4 HOH B 6 706 706 HOH HOH . H 4 HOH B 7 707 707 HOH HOH . H 4 HOH B 8 708 708 HOH HOH . H 4 HOH B 9 709 709 HOH HOH . H 4 HOH B 10 710 710 HOH HOH . H 4 HOH B 11 711 711 HOH HOH . H 4 HOH B 12 712 712 HOH HOH . H 4 HOH B 13 713 713 HOH HOH . H 4 HOH B 14 714 714 HOH HOH . H 4 HOH B 15 715 715 HOH HOH . H 4 HOH B 16 716 716 HOH HOH . H 4 HOH B 17 717 717 HOH HOH . H 4 HOH B 18 718 718 HOH HOH . H 4 HOH B 19 719 719 HOH HOH . H 4 HOH B 20 720 720 HOH HOH . H 4 HOH B 21 721 721 HOH HOH . H 4 HOH B 22 722 722 HOH HOH . H 4 HOH B 23 723 723 HOH HOH . H 4 HOH B 24 724 724 HOH HOH . H 4 HOH B 25 725 725 HOH HOH . H 4 HOH B 26 726 726 HOH HOH . H 4 HOH B 27 727 727 HOH HOH . H 4 HOH B 28 728 728 HOH HOH . H 4 HOH B 29 729 729 HOH HOH . H 4 HOH B 30 730 730 HOH HOH . H 4 HOH B 31 731 731 HOH HOH . H 4 HOH B 32 732 732 HOH HOH . H 4 HOH B 33 733 733 HOH HOH . H 4 HOH B 34 734 734 HOH HOH . H 4 HOH B 35 735 735 HOH HOH . H 4 HOH B 36 736 736 HOH HOH . H 4 HOH B 37 737 737 HOH HOH . H 4 HOH B 38 738 738 HOH HOH . H 4 HOH B 39 739 739 HOH HOH . H 4 HOH B 40 740 740 HOH HOH . H 4 HOH B 41 741 741 HOH HOH . H 4 HOH B 42 742 742 HOH HOH . H 4 HOH B 43 743 743 HOH HOH . H 4 HOH B 44 744 744 HOH HOH . H 4 HOH B 45 745 745 HOH HOH . H 4 HOH B 46 746 746 HOH HOH . H 4 HOH B 47 747 747 HOH HOH . H 4 HOH B 48 748 748 HOH HOH . H 4 HOH B 49 749 749 HOH HOH . H 4 HOH B 50 750 750 HOH HOH . H 4 HOH B 51 751 751 HOH HOH . H 4 HOH B 52 752 752 HOH HOH . H 4 HOH B 53 753 753 HOH HOH . H 4 HOH B 54 754 754 HOH HOH . H 4 HOH B 55 755 755 HOH HOH . H 4 HOH B 56 756 756 HOH HOH . H 4 HOH B 57 757 757 HOH HOH . H 4 HOH B 58 758 758 HOH HOH . H 4 HOH B 59 759 759 HOH HOH . H 4 HOH B 60 760 760 HOH HOH . H 4 HOH B 61 761 761 HOH HOH . H 4 HOH B 62 762 762 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 58.257 -19.815 35.599 1 24.2 ? CHA HEM 601 B 1 HETATM 2 C CHB HEM . . . E 2 62.594 -20.751 33.836 1 20.77 ? CHB HEM 601 B 1 HETATM 3 C CHC HEM . . . E 2 61.27 -19.201 29.427 1 22.34 ? CHC HEM 601 B 1 HETATM 4 C CHD HEM . . . E 2 56.936 -18.084 31.265 1 26.07 ? CHD HEM 601 B 1 HETATM 5 C C1A HEM . . . E 2 59.55 -20.191 35.486 1 21.84 ? C1A HEM 601 B 1 HETATM 6 C C2A HEM . . . E 2 60.326 -20.653 36.542 1 20.48 ? C2A HEM 601 B 1 HETATM 7 C C3A HEM . . . E 2 61.533 -20.944 36.054 1 20.37 ? C3A HEM 601 B 1 HETATM 8 C C4A HEM . . . E 2 61.52 -20.627 34.684 1 21.4 ? C4A HEM 601 B 1 HETATM 9 C CMA HEM . . . E 2 62.694 -21.503 36.839 1 19.92 ? CMA HEM 601 B 1 HETATM 10 C CAA HEM . . . E 2 59.937 -20.896 37.972 1 20.93 ? CAA HEM 601 B 1 HETATM 11 C CBA HEM . . . E 2 59.604 -19.658 38.792 1 20.61 ? CBA HEM 601 B 1 HETATM 12 C CGA HEM . . . E 2 59.406 -20.069 40.237 1 19.92 ? CGA HEM 601 B 1 HETATM 13 O O1A HEM . . . E 2 59.247 -19.24 41.151 1 18.81 ? O1A HEM 601 B 1 HETATM 14 O O2A HEM . . . E 2 59.419 -21.269 40.56 1 20.24 ? O2A HEM 601 B 1 HETATM 15 C C1B HEM . . . E 2 62.567 -20.413 32.493 1 20.27 ? C1B HEM 601 B 1 HETATM 16 C C2B HEM . . . E 2 63.674 -20.67 31.654 1 20.13 ? C2B HEM 601 B 1 HETATM 17 C C3B HEM . . . E 2 63.329 -20.242 30.425 1 20.62 ? C3B HEM 601 B 1 HETATM 18 C C4B HEM . . . E 2 61.959 -19.722 30.524 1 22.02 ? C4B HEM 601 B 1 HETATM 19 C CMB HEM . . . E 2 64.988 -21.288 32.035 1 19.77 ? CMB HEM 601 B 1 HETATM 20 C CAB HEM . . . E 2 64.112 -20.293 29.215 1 21.21 ? CAB HEM 601 B 1 HETATM 21 C CBB HEM . . . E 2 65.297 -20.901 29.143 1 22.48 ? CBB HEM 601 B 1 HETATM 22 C C1C HEM . . . E 2 59.949 -18.776 29.508 1 23.37 ? C1C HEM 601 B 1 HETATM 23 C C2C HEM . . . E 2 59.102 -18.429 28.436 1 24.36 ? C2C HEM 601 B 1 HETATM 24 C C3C HEM . . . E 2 57.865 -18.117 28.973 1 24.31 ? C3C HEM 601 B 1 HETATM 25 C C4C HEM . . . E 2 57.973 -18.276 30.378 1 25.61 ? C4C HEM 601 B 1 HETATM 26 C CMC HEM . . . E 2 59.449 -18.41 26.951 1 23.76 ? CMC HEM 601 B 1 HETATM 27 C CAC HEM . . . E 2 56.629 -17.726 28.26 1 25.33 ? CAC HEM 601 B 1 HETATM 28 C CBC HEM . . . E 2 56.444 -17.926 26.943 1 26.67 ? CBC HEM 601 B 1 HETATM 29 C C1D HEM . . . E 2 56.978 -18.495 32.589 1 25.98 ? C1D HEM 601 B 1 HETATM 30 C C2D HEM . . . E 2 55.806 -18.432 33.462 1 28.98 ? C2D HEM 601 B 1 HETATM 31 C C3D HEM . . . E 2 56.158 -18.901 34.661 1 30.06 ? C3D HEM 601 B 1 HETATM 32 C C4D HEM . . . E 2 57.567 -19.28 34.511 1 27.31 ? C4D HEM 601 B 1 HETATM 33 C CMD HEM . . . E 2 54.412 -17.939 33.159 1 31.01 ? CMD HEM 601 B 1 HETATM 34 C CAD HEM . . . E 2 55.202 -19.04 35.828 1 31.72 ? CAD HEM 601 B 1 HETATM 35 C CBD HEM . . . E 2 55.529 -18.293 37.131 1 36.7 ? CBD HEM 601 B 1 HETATM 36 C CGD HEM . . . E 2 54.665 -18.79 38.293 1 37.08 ? CGD HEM 601 B 1 HETATM 37 O O1D HEM . . . E 2 54.912 -18.377 39.442 1 40.96 ? O1D HEM 601 B 1 HETATM 38 O O2D HEM . . . E 2 53.699 -19.585 38.135 1 38.04 ? O2D HEM 601 B 1 HETATM 39 N NA HEM . . . E 2 60.294 -20.163 34.327 1 23.04 ? NA HEM 601 B 1 HETATM 40 N NB HEM . . . E 2 61.583 -19.856 31.806 1 21.35 ? NB HEM 601 B 1 HETATM 41 N NC HEM . . . E 2 59.246 -18.676 30.667 1 24.57 ? NC HEM 601 B 1 HETATM 42 N ND HEM . . . E 2 57.996 -19.014 33.251 1 25.41 ? ND HEM 601 B 1 HETATM 43 FE FE HEM . . . E 2 59.721 -19.339 32.581 1 24.72 ? FE HEM 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #