data_8SS3 # _model_server_result.job_id qaWNqd_fcXNLjM9KHruPhQ _model_server_result.datetime_utc '2025-09-09 00:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ss3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DB","auth_seq_id":1105}' # _entry.id 8SS3 # _exptl.entry_id 8SS3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 50 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SS3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 N N N ? 4 O N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 W N N ? 4 X N N ? 4 Z N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N ? 4 IA N N ? 4 JA N N ? 4 LA N N ? 4 MA N N ? 4 NA N N ? 4 OA N N ? 4 QA N N ? 4 RA N N ? 4 VA N N ? 4 WA N N ? 4 YA N N ? 4 ZA N N ? 4 BB N N ? 4 CB N N ? 4 DB N N ? 4 EB N N ? 4 FB N N ? 4 GB N N ? 4 HB N N ? 4 IB N N ? 4 JB N N ? 4 KB N N ? 4 LB N N ? 4 MB N N ? 4 NB N N ? 4 OB N N ? 4 PB N N ? 4 QB N N ? 4 RB N N ? 4 SB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 881 A CYS 890 1_555 A SG CYS 891 A CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 C SG CYS 881 C CYS 890 1_555 C SG CYS 891 C CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 499 n n C1 O3P PCW sing 500 n n C1 H11 PCW sing 501 n n C1 H12 PCW sing 502 n n C2 C3 PCW sing 503 n n C2 O2 PCW sing 504 n n C2 H2 PCW sing 505 n n C3 O3 PCW sing 506 n n C3 H31 PCW sing 507 n n C3 H32 PCW sing 508 n n C4 C5 PCW sing 509 n n C4 O4P PCW sing 510 n n C4 H41 PCW sing 511 n n C4 H42 PCW sing 512 n n C5 N PCW sing 513 n n C5 H51 PCW sing 514 n n C5 H52 PCW sing 515 n n C6 N PCW sing 516 n n C6 H61 PCW sing 517 n n C6 H62 PCW sing 518 n n C6 H63 PCW sing 519 n n C7 N PCW sing 520 n n C7 H71 PCW sing 521 n n C7 H72 PCW sing 522 n n C7 H73 PCW sing 523 n n C8 N PCW sing 524 n n C8 H81 PCW sing 525 n n C8 H82 PCW sing 526 n n C8 H83 PCW sing 527 n n C11 C12 PCW sing 528 n n C11 O3 PCW sing 529 n n C11 O11 PCW doub 530 n n C12 C13 PCW sing 531 n n C12 H121 PCW sing 532 n n C12 H122 PCW sing 533 n n C13 C14 PCW sing 534 n n C13 H131 PCW sing 535 n n C13 H132 PCW sing 536 n n C14 C15 PCW sing 537 n n C14 H141 PCW sing 538 n n C14 H142 PCW sing 539 n n C15 C16 PCW sing 540 n n C15 H151 PCW sing 541 n n C15 H152 PCW sing 542 n n C16 C17 PCW sing 543 n n C16 H161 PCW sing 544 n n C16 H162 PCW sing 545 n n C17 C18 PCW sing 546 n n C17 H171 PCW sing 547 n n C17 H172 PCW sing 548 n n C18 C19 PCW sing 549 n n C18 H181 PCW sing 550 n n C18 H182 PCW sing 551 n n C19 C20 PCW doub 552 z n C19 H19 PCW sing 553 n n C20 C21 PCW sing 554 n n C20 H20 PCW sing 555 n n C21 C22 PCW sing 556 n n C21 H211 PCW sing 557 n n C21 H212 PCW sing 558 n n C22 C23 PCW sing 559 n n C22 H221 PCW sing 560 n n C22 H222 PCW sing 561 n n C23 C24 PCW sing 562 n n C23 H231 PCW sing 563 n n C23 H232 PCW sing 564 n n C24 C25 PCW sing 565 n n C24 H241 PCW sing 566 n n C24 H242 PCW sing 567 n n C25 C26 PCW sing 568 n n C25 H251 PCW sing 569 n n C25 H252 PCW sing 570 n n C26 C27 PCW sing 571 n n C26 H261 PCW sing 572 n n C26 H262 PCW sing 573 n n C27 C28 PCW sing 574 n n C27 H271 PCW sing 575 n n C27 H272 PCW sing 576 n n C28 H281 PCW sing 577 n n C28 H282 PCW sing 578 n n C28 H283 PCW sing 579 n n C31 C32 PCW sing 580 n n C31 O2 PCW sing 581 n n C31 O31 PCW doub 582 n n C32 C33 PCW sing 583 n n C32 H321 PCW sing 584 n n C32 H322 PCW sing 585 n n C33 C34 PCW sing 586 n n C33 H331 PCW sing 587 n n C33 H332 PCW sing 588 n n C34 C35 PCW sing 589 n n C34 H341 PCW sing 590 n n C34 H342 PCW sing 591 n n C35 C36 PCW sing 592 n n C35 H351 PCW sing 593 n n C35 H352 PCW sing 594 n n C36 C37 PCW sing 595 n n C36 H361 PCW sing 596 n n C36 H362 PCW sing 597 n n C37 C38 PCW sing 598 n n C37 H371 PCW sing 599 n n C37 H372 PCW sing 600 n n C38 C39 PCW sing 601 n n C38 H381 PCW sing 602 n n C38 H382 PCW sing 603 n n C39 C40 PCW doub 604 z n C39 H39 PCW sing 605 n n C40 C41 PCW sing 606 n n C40 H40 PCW sing 607 n n C41 C42 PCW sing 608 n n C41 H411 PCW sing 609 n n C41 H412 PCW sing 610 n n C42 C43 PCW sing 611 n n C42 H421 PCW sing 612 n n C42 H422 PCW sing 613 n n C43 C44 PCW sing 614 n n C43 H431 PCW sing 615 n n C43 H432 PCW sing 616 n n C44 C45 PCW sing 617 n n C44 H441 PCW sing 618 n n C44 H442 PCW sing 619 n n C45 C46 PCW sing 620 n n C45 H451 PCW sing 621 n n C45 H452 PCW sing 622 n n C46 C47 PCW sing 623 n n C46 H461 PCW sing 624 n n C46 H462 PCW sing 625 n n C47 C48 PCW sing 626 n n C47 H471 PCW sing 627 n n C47 H472 PCW sing 628 n n C48 H481 PCW sing 629 n n C48 H482 PCW sing 630 n n C48 H483 PCW sing 631 n n O1P P PCW sing 632 n n O1P H1P PCW sing 633 n n O2P P PCW doub 634 n n O3P P PCW sing 635 n n O4P P PCW sing 636 n n # _atom_sites.entry_id 8SS3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ZK1 A 1 1101 1101 ZK1 ZK1 . H 4 PCW A 1 1102 1102 PCW PCW . I 4 PCW A 1 1103 1103 PCW PCW . J 4 PCW A 1 1104 1104 PCW PCW . K 4 PCW A 1 1105 1106 PCW PCW . L 4 PCW A 1 1106 1107 PCW PCW . M 5 CLR A 1 1107 1108 CLR CLR . N 4 PCW A 1 1108 1109 PCW PCW . O 4 PCW A 1 1109 1112 PCW PCW . P 6 AJP A 1 1110 1113 AJP AJP . Q 6 AJP A 1 1111 1114 AJP AJP . R 5 CLR A 1 1112 1115 CLR CLR . S 4 PCW A 1 1113 1116 PCW PCW . T 4 PCW A 1 1114 1117 PCW PCW . U 4 PCW A 1 1115 1105 PCW PCW . V 6 AJP A 1 1116 1107 AJP AJP . W 4 PCW A 1 1117 1109 PCW PCW . X 4 PCW A 1 1118 1111 PCW PCW . Y 7 SPD A 1 1119 1 SPD SPD . Z 4 PCW B 1 1101 1110 PCW PCW . AA 3 ZK1 B 1 1102 1101 ZK1 ZK1 . BA 4 PCW B 1 1103 1102 PCW PCW . CA 4 PCW B 1 1104 1103 PCW PCW . DA 4 PCW B 1 1105 1104 PCW PCW . EA 4 PCW B 1 1106 1106 PCW PCW . FA 4 PCW B 1 1107 1108 PCW PCW . GA 4 PCW B 1 1108 1110 PCW PCW . HA 4 PCW B 1 1109 1112 PCW PCW . IA 4 PCW B 1 1110 1106 PCW PCW . JA 4 PCW B 1 1111 1117 PCW PCW . KA 3 ZK1 C 1 1101 1101 ZK1 ZK1 . LA 4 PCW C 1 1102 1102 PCW PCW . MA 4 PCW C 1 1103 1103 PCW PCW . NA 4 PCW C 1 1104 1104 PCW PCW . OA 4 PCW C 1 1105 1107 PCW PCW . PA 5 CLR C 1 1106 1108 CLR CLR . QA 4 PCW C 1 1107 1109 PCW PCW . RA 4 PCW C 1 1108 1112 PCW PCW . SA 6 AJP C 1 1109 1113 AJP AJP . TA 6 AJP C 1 1110 1114 AJP AJP . UA 5 CLR C 1 1111 1115 CLR CLR . VA 4 PCW C 1 1112 1116 PCW PCW . WA 4 PCW C 1 1113 1105 PCW PCW . XA 6 AJP C 1 1114 1107 AJP AJP . YA 4 PCW C 1 1115 1109 PCW PCW . ZA 4 PCW D 1 1101 1110 PCW PCW . AB 3 ZK1 D 1 1102 1101 ZK1 ZK1 . BB 4 PCW D 1 1103 1102 PCW PCW . CB 4 PCW D 1 1104 1103 PCW PCW . DB 4 PCW D 1 1105 1104 PCW PCW . EB 4 PCW D 1 1106 1106 PCW PCW . FB 4 PCW D 1 1107 1108 PCW PCW . GB 4 PCW D 1 1108 1110 PCW PCW . HB 4 PCW D 1 1109 1111 PCW PCW . IB 4 PCW D 1 1110 1112 PCW PCW . JB 4 PCW E 1 201 1113 PCW PCW . KB 4 PCW E 1 202 1105 PCW PCW . LB 4 PCW E 1 203 1111 PCW PCW . MB 4 PCW E 1 204 1118 PCW PCW . NB 4 PCW E 1 205 1119 PCW PCW . OB 4 PCW F 1 201 1105 PCW PCW . PB 4 PCW F 1 202 1111 PCW PCW . QB 4 PCW F 1 203 1118 PCW PCW . RB 4 PCW F 1 204 1119 PCW PCW . SB 4 PCW F 1 205 1113 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . DB 4 180.625 197.006 228.14 1 12.35 ? C1 PCW 1105 D 1 HETATM 2 C C2 PCW . . . DB 4 181.624 197.547 227.104 1 12.35 ? C2 PCW 1105 D 1 HETATM 3 C C3 PCW . . . DB 4 182.485 196.413 226.543 1 12.35 ? C3 PCW 1105 D 1 HETATM 4 C C4 PCW . . . DB 4 181.477 192.91 229.88 1 12.35 ? C4 PCW 1105 D 1 HETATM 5 C C5 PCW . . . DB 4 180.201 192.044 230.159 1 12.35 ? C5 PCW 1105 D 1 HETATM 6 C C6 PCW . . . DB 4 178.062 191.989 231.182 1 12.35 ? C6 PCW 1105 D 1 HETATM 7 C C7 PCW . . . DB 4 179.89 191.128 232.404 1 12.35 ? C7 PCW 1105 D 1 HETATM 8 C C8 PCW . . . DB 4 179.885 193.473 232.172 1 12.35 ? C8 PCW 1105 D 1 HETATM 9 C C11 PCW . . . DB 4 184.433 196.186 225.171 1 12.35 ? C11 PCW 1105 D 1 HETATM 10 C C12 PCW . . . DB 4 184.928 194.93 225.93 1 12.35 ? C12 PCW 1105 D 1 HETATM 11 C C31 PCW . . . DB 4 180.003 197.92 225.197 1 12.35 ? C31 PCW 1105 D 1 HETATM 12 C C32 PCW . . . DB 4 180.23 197.635 223.693 1 12.35 ? C32 PCW 1105 D 1 HETATM 13 C C33 PCW . . . DB 4 178.848 197.617 222.987 1 12.35 ? C33 PCW 1105 D 1 HETATM 14 C C34 PCW . . . DB 4 178.946 197.524 221.445 1 12.35 ? C34 PCW 1105 D 1 HETATM 15 C C35 PCW . . . DB 4 179.197 198.891 220.76 1 12.35 ? C35 PCW 1105 D 1 HETATM 16 C C36 PCW . . . DB 4 179.72 198.741 219.308 1 12.35 ? C36 PCW 1105 D 1 HETATM 17 C C37 PCW . . . DB 4 180.663 197.525 219.128 1 12.35 ? C37 PCW 1105 D 1 HETATM 18 C C38 PCW . . . DB 4 181.349 197.547 217.742 1 12.35 ? C38 PCW 1105 D 1 HETATM 19 C C39 PCW . . . DB 4 182.636 198.403 217.727 1 12.35 ? C39 PCW 1105 D 1 HETATM 20 C C40 PCW . . . DB 4 183.564 198.181 216.788 1 12.35 ? C40 PCW 1105 D 1 HETATM 21 C C41 PCW . . . DB 4 183.349 197.073 215.729 1 12.35 ? C41 PCW 1105 D 1 HETATM 22 C C42 PCW . . . DB 4 183.689 197.539 214.294 1 12.35 ? C42 PCW 1105 D 1 HETATM 23 N N PCW . . . DB 4 179.502 192.21 231.479 1 12.35 ? N PCW 1105 D 1 HETATM 24 O O2 PCW . . . DB 4 181.077 198.328 226.053 1 12.35 ? O2 PCW 1105 D 1 HETATM 25 O O3 PCW . . . DB 4 183.5 197.057 225.787 1 12.35 ? O3 PCW 1105 D 1 HETATM 26 O O11 PCW . . . DB 4 184.839 196.426 224.081 1 12.35 ? O11 PCW 1105 D 1 HETATM 27 O O31 PCW . . . DB 4 178.888 197.838 225.587 1 12.35 ? O31 PCW 1105 D 1 HETATM 28 O O1P PCW . . . DB 4 178.61 194.717 229.335 1 12.35 ? O1P PCW 1105 D 1 HETATM 29 O O2P PCW . . . DB 4 179.469 193.439 227.363 1 12.35 ? O2P PCW 1105 D 1 HETATM 30 O O3P PCW . . . DB 4 179.945 195.921 227.545 1 12.35 ? O3P PCW 1105 D 1 HETATM 31 O O4P PCW . . . DB 4 181.194 194.152 229.218 1 12.35 ? O4P PCW 1105 D 1 HETATM 32 P P PCW . . . DB 4 179.775 194.503 228.392 1 12.35 ? P PCW 1105 D 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #