data_8SS6 # _model_server_result.job_id vjv-XyZo3feG9XIYFZ7Oow _model_server_result.datetime_utc '2024-11-25 21:42:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ss6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1101}' # _entry.id 8SS6 # _exptl.entry_id 8SS6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 349.385 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-(6'-oxo-1'-phenyl[1',6'-dihydro[2,3'-bipyridine]]-5'-yl)benzonitrile" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SS6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 R N N ? 3 AA N N ? 3 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 580 A CYS 589 1_555 D SG CYS 580 D CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf3 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 881 A CYS 890 1_555 A SG CYS 891 A CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 580 B CYS 589 1_555 C SG CYS 580 C CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? disulf ? disulf7 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf9 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 C SG CYS 881 C CYS 890 1_555 C SG CYS 891 C CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf12 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C23 H15 N3 O' _chem_comp.formula_weight 349.385 _chem_comp.id 6ZP _chem_comp.mon_nstd_flag . _chem_comp.name "2-(6'-oxo-1'-phenyl[1',6'-dihydro[2,3'-bipyridine]]-5'-yl)benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C25 6ZP doub 1 n y C24 C23 6ZP sing 2 n y C25 C26 6ZP sing 3 n y C23 C22 6ZP doub 4 n y N01 C02 6ZP trip 5 n n C26 C27 6ZP doub 6 n y C02 C03 6ZP sing 7 n n C22 C27 6ZP sing 8 n y C22 N21 6ZP sing 9 n n O11 C10 6ZP doub 10 n n C03 C04 6ZP doub 11 n y C03 C08 6ZP sing 12 n y C04 C05 6ZP sing 13 n y C10 N21 6ZP sing 14 n n C10 C09 6ZP sing 15 n n N21 C20 6ZP sing 16 n n C08 C09 6ZP sing 17 n n C08 C07 6ZP doub 18 n y C05 C06 6ZP doub 19 n y C09 C12 6ZP doub 20 n n C20 C13 6ZP doub 21 n n C13 C12 6ZP sing 22 n n C13 C14 6ZP sing 23 n n C07 C06 6ZP sing 24 n y C19 C14 6ZP doub 25 n y C19 C18 6ZP sing 26 n y C14 N15 6ZP sing 27 n y C18 C17 6ZP doub 28 n y N15 C16 6ZP doub 29 n y C17 C16 6ZP sing 30 n y C04 H1 6ZP sing 31 n n C05 H2 6ZP sing 32 n n C06 H3 6ZP sing 33 n n C07 H4 6ZP sing 34 n n C12 H5 6ZP sing 35 n n C16 H6 6ZP sing 36 n n C17 H7 6ZP sing 37 n n C18 H8 6ZP sing 38 n n C19 H9 6ZP sing 39 n n C20 H10 6ZP sing 40 n n C23 H11 6ZP sing 41 n n C24 H12 6ZP sing 42 n n C25 H13 6ZP sing 43 n n C26 H14 6ZP sing 44 n n C27 H15 6ZP sing 45 n n # _atom_sites.entry_id 8SS6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 6ZP A 1 1101 1100 6ZP 6ZP . H 4 ZK1 A 1 1102 1101 ZK1 ZK1 . I 5 PCW A 1 1103 1102 PCW PCW . J 5 PCW A 1 1104 1103 PCW PCW . K 5 PCW A 1 1105 1105 PCW PCW . L 5 PCW A 1 1106 1106 PCW PCW . M 6 CLR A 1 1107 1108 CLR CLR . N 6 CLR A 1 1108 1109 CLR CLR . O 5 PCW A 1 1109 1104 PCW PCW . P 5 PCW A 1 1110 1110 PCW PCW . Q 7 NA A 1 1111 1 NA NA . R 3 6ZP B 1 1101 1100 6ZP 6ZP . S 4 ZK1 B 1 1102 1101 ZK1 ZK1 . T 5 PCW B 1 1103 1102 PCW PCW . U 5 PCW B 1 1104 1105 PCW PCW . V 5 PCW B 1 1105 1106 PCW PCW . W 5 PCW B 1 1106 1107 PCW PCW . X 6 CLR B 1 1107 1108 CLR CLR . Y 6 CLR B 1 1108 1109 CLR CLR . Z 5 PCW B 1 1109 1104 PCW PCW . AA 3 6ZP C 1 1101 1100 6ZP 6ZP . BA 4 ZK1 C 1 1102 1101 ZK1 ZK1 . CA 5 PCW C 1 1103 1102 PCW PCW . DA 5 PCW C 1 1104 1103 PCW PCW . EA 5 PCW C 1 1105 1105 PCW PCW . FA 5 PCW C 1 1106 1106 PCW PCW . GA 6 CLR C 1 1107 1108 CLR CLR . HA 6 CLR C 1 1108 1109 CLR CLR . IA 5 PCW C 1 1109 1104 PCW PCW . JA 5 PCW C 1 1110 1110 PCW PCW . KA 8 SPD C 1 1111 2 SPD SPD . LA 5 PCW D 1 1101 1104 PCW PCW . MA 3 6ZP D 1 1102 1100 6ZP 6ZP . NA 4 ZK1 D 1 1103 1101 ZK1 ZK1 . OA 5 PCW D 1 1104 1102 PCW PCW . PA 5 PCW D 1 1105 1105 PCW PCW . QA 5 PCW D 1 1106 1106 PCW PCW . RA 5 PCW D 1 1107 1107 PCW PCW . SA 6 CLR D 1 1108 1108 CLR CLR . TA 6 CLR D 1 1109 1109 CLR CLR . UA 5 PCW E 1 201 1107 PCW PCW . VA 5 PCW E 1 202 1110 PCW PCW . WA 5 PCW E 1 203 1103 PCW PCW . XA 5 PCW F 1 201 1103 PCW PCW . YA 5 PCW F 1 202 1107 PCW PCW . ZA 5 PCW F 1 203 1110 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 6ZP . . . G 3 192.262 179.234 173.565 1 23.84 ? N01 6ZP 1101 A 1 HETATM 2 C C02 6ZP . . . G 3 191.736 179.281 172.554 1 23.84 ? C02 6ZP 1101 A 1 HETATM 3 C C03 6ZP . . . G 3 191.153 179.438 171.251 1 23.84 ? C03 6ZP 1101 A 1 HETATM 4 C C04 6ZP . . . G 3 192.027 179.568 170.177 1 23.84 ? C04 6ZP 1101 A 1 HETATM 5 C C05 6ZP . . . G 3 191.524 179.733 168.906 1 23.84 ? C05 6ZP 1101 A 1 HETATM 6 C C06 6ZP . . . G 3 190.17 179.77 168.702 1 23.84 ? C06 6ZP 1101 A 1 HETATM 7 C C07 6ZP . . . G 3 189.299 179.644 169.768 1 23.84 ? C07 6ZP 1101 A 1 HETATM 8 C C08 6ZP . . . G 3 189.763 179.495 171.067 1 23.84 ? C08 6ZP 1101 A 1 HETATM 9 C C09 6ZP . . . G 3 188.815 179.332 172.198 1 23.84 ? C09 6ZP 1101 A 1 HETATM 10 C C10 6ZP . . . G 3 188.85 178.164 172.932 1 23.84 ? C10 6ZP 1101 A 1 HETATM 11 O O11 6ZP . . . G 3 189.632 177.257 172.723 1 23.84 ? O11 6ZP 1101 A 1 HETATM 12 C C12 6ZP . . . G 3 187.867 180.299 172.525 1 23.84 ? C12 6ZP 1101 A 1 HETATM 13 C C13 6ZP . . . G 3 186.981 180.1 173.576 1 23.84 ? C13 6ZP 1101 A 1 HETATM 14 C C14 6ZP . . . G 3 185.99 181.136 173.961 1 23.84 ? C14 6ZP 1101 A 1 HETATM 15 N N15 6ZP . . . G 3 186.268 182.392 173.591 1 23.84 ? N15 6ZP 1101 A 1 HETATM 16 C C16 6ZP . . . G 3 185.408 183.353 173.939 1 23.84 ? C16 6ZP 1101 A 1 HETATM 17 C C17 6ZP . . . G 3 184.278 183.129 174.675 1 23.84 ? C17 6ZP 1101 A 1 HETATM 18 C C18 6ZP . . . G 3 184.007 181.849 175.067 1 23.84 ? C18 6ZP 1101 A 1 HETATM 19 C C19 6ZP . . . G 3 184.876 180.841 174.724 1 23.84 ? C19 6ZP 1101 A 1 HETATM 20 C C20 6ZP . . . G 3 187.041 178.956 174.287 1 23.84 ? C20 6ZP 1101 A 1 HETATM 21 N N21 6ZP . . . G 3 187.97 177.99 173.967 1 23.84 ? N21 6ZP 1101 A 1 HETATM 22 C C22 6ZP . . . G 3 188.026 176.77 174.741 1 23.84 ? C22 6ZP 1101 A 1 HETATM 23 C C23 6ZP . . . G 3 186.91 175.964 174.825 1 23.84 ? C23 6ZP 1101 A 1 HETATM 24 C C24 6ZP . . . G 3 186.973 174.802 175.572 1 23.84 ? C24 6ZP 1101 A 1 HETATM 25 C C25 6ZP . . . G 3 188.13 174.461 176.226 1 23.84 ? C25 6ZP 1101 A 1 HETATM 26 C C26 6ZP . . . G 3 189.235 175.27 176.144 1 23.84 ? C26 6ZP 1101 A 1 HETATM 27 C C27 6ZP . . . G 3 189.19 176.434 175.402 1 23.84 ? C27 6ZP 1101 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #