data_8SS6
#
_model_server_result.job_id            FNGS-UJcf9I0rjrjzAQtAw 
_model_server_result.datetime_utc      '2024-11-25 21:35:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ss6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":1101}' 
#
_entry.id    8SS6 
#
_exptl.entry_id    8SS6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              349.385 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2-(6'-oxo-1'-phenyl[1',6'-dihydro[2,3'-bipyridine]]-5'-yl)benzonitrile" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SS6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SS6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 R N N 
? 3 AA N N 
? 3 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 63 1_555 A SG CYS 306 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 A SG CYS 580 A CYS 589 1_555 D SG CYS 580 D CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf3 A SG CYS 709 A CYS 718 1_555 A SG CYS 764 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 A SG CYS 881 A CYS 890 1_555 A SG CYS 891 A CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 B SG CYS 54 B CYS 63 1_555 B SG CYS 306 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 580 B CYS 589 1_555 C SG CYS 580 C CYS 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
disulf ? disulf7 B SG CYS 709 B CYS 718 1_555 B SG CYS 764 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 C SG CYS 54 C CYS 63 1_555 C SG CYS 306 C CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf9 C SG CYS 709 C CYS 718 1_555 C SG CYS 764 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf10 C SG CYS 881 C CYS 890 1_555 C SG CYS 891 C CYS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf11 D SG CYS 54 D CYS 63 1_555 D SG CYS 306 D CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 D SG CYS 709 D CYS 718 1_555 D SG CYS 764 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C23 H15 N3 O' 
_chem_comp.formula_weight    349.385 
_chem_comp.id                6ZP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2-(6'-oxo-1'-phenyl[1',6'-dihydro[2,3'-bipyridine]]-5'-yl)benzonitrile" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 C25 6ZP doub 1 n y 
C24 C23 6ZP sing 2 n y 
C25 C26 6ZP sing 3 n y 
C23 C22 6ZP doub 4 n y 
N01 C02 6ZP trip 5 n n 
C26 C27 6ZP doub 6 n y 
C02 C03 6ZP sing 7 n n 
C22 C27 6ZP sing 8 n y 
C22 N21 6ZP sing 9 n n 
O11 C10 6ZP doub 10 n n 
C03 C04 6ZP doub 11 n y 
C03 C08 6ZP sing 12 n y 
C04 C05 6ZP sing 13 n y 
C10 N21 6ZP sing 14 n n 
C10 C09 6ZP sing 15 n n 
N21 C20 6ZP sing 16 n n 
C08 C09 6ZP sing 17 n n 
C08 C07 6ZP doub 18 n y 
C05 C06 6ZP doub 19 n y 
C09 C12 6ZP doub 20 n n 
C20 C13 6ZP doub 21 n n 
C13 C12 6ZP sing 22 n n 
C13 C14 6ZP sing 23 n n 
C07 C06 6ZP sing 24 n y 
C19 C14 6ZP doub 25 n y 
C19 C18 6ZP sing 26 n y 
C14 N15 6ZP sing 27 n y 
C18 C17 6ZP doub 28 n y 
N15 C16 6ZP doub 29 n y 
C17 C16 6ZP sing 30 n y 
C04 H1 6ZP sing 31 n n 
C05 H2 6ZP sing 32 n n 
C06 H3 6ZP sing 33 n n 
C07 H4 6ZP sing 34 n n 
C12 H5 6ZP sing 35 n n 
C16 H6 6ZP sing 36 n n 
C17 H7 6ZP sing 37 n n 
C18 H8 6ZP sing 38 n n 
C19 H9 6ZP sing 39 n n 
C20 H10 6ZP sing 40 n n 
C23 H11 6ZP sing 41 n n 
C24 H12 6ZP sing 42 n n 
C25 H13 6ZP sing 43 n n 
C26 H14 6ZP sing 44 n n 
C27 H15 6ZP sing 45 n n 
#
_atom_sites.entry_id                     8SS6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 6ZP A 1 1101 1100 6ZP 6ZP . 
H 4 ZK1 A 1 1102 1101 ZK1 ZK1 . 
I 5 PCW A 1 1103 1102 PCW PCW . 
J 5 PCW A 1 1104 1103 PCW PCW . 
K 5 PCW A 1 1105 1105 PCW PCW . 
L 5 PCW A 1 1106 1106 PCW PCW . 
M 6 CLR A 1 1107 1108 CLR CLR . 
N 6 CLR A 1 1108 1109 CLR CLR . 
O 5 PCW A 1 1109 1104 PCW PCW . 
P 5 PCW A 1 1110 1110 PCW PCW . 
Q 7 NA A 1 1111 1 NA NA . 
R 3 6ZP B 1 1101 1100 6ZP 6ZP . 
S 4 ZK1 B 1 1102 1101 ZK1 ZK1 . 
T 5 PCW B 1 1103 1102 PCW PCW . 
U 5 PCW B 1 1104 1105 PCW PCW . 
V 5 PCW B 1 1105 1106 PCW PCW . 
W 5 PCW B 1 1106 1107 PCW PCW . 
X 6 CLR B 1 1107 1108 CLR CLR . 
Y 6 CLR B 1 1108 1109 CLR CLR . 
Z 5 PCW B 1 1109 1104 PCW PCW . 
AA 3 6ZP C 1 1101 1100 6ZP 6ZP . 
BA 4 ZK1 C 1 1102 1101 ZK1 ZK1 . 
CA 5 PCW C 1 1103 1102 PCW PCW . 
DA 5 PCW C 1 1104 1103 PCW PCW . 
EA 5 PCW C 1 1105 1105 PCW PCW . 
FA 5 PCW C 1 1106 1106 PCW PCW . 
GA 6 CLR C 1 1107 1108 CLR CLR . 
HA 6 CLR C 1 1108 1109 CLR CLR . 
IA 5 PCW C 1 1109 1104 PCW PCW . 
JA 5 PCW C 1 1110 1110 PCW PCW . 
KA 8 SPD C 1 1111 2 SPD SPD . 
LA 5 PCW D 1 1101 1104 PCW PCW . 
MA 3 6ZP D 1 1102 1100 6ZP 6ZP . 
NA 4 ZK1 D 1 1103 1101 ZK1 ZK1 . 
OA 5 PCW D 1 1104 1102 PCW PCW . 
PA 5 PCW D 1 1105 1105 PCW PCW . 
QA 5 PCW D 1 1106 1106 PCW PCW . 
RA 5 PCW D 1 1107 1107 PCW PCW . 
SA 6 CLR D 1 1108 1108 CLR CLR . 
TA 6 CLR D 1 1109 1109 CLR CLR . 
UA 5 PCW E 1 201 1107 PCW PCW . 
VA 5 PCW E 1 202 1110 PCW PCW . 
WA 5 PCW E 1 203 1103 PCW PCW . 
XA 5 PCW F 1 201 1103 PCW PCW . 
YA 5 PCW F 1 202 1107 PCW PCW . 
ZA 5 PCW F 1 203 1110 PCW PCW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N01 6ZP . . . R 3 178.882 192.657 173.524 1 0.01 ? N01 6ZP 1101 B 1 
HETATM 2 C C02 6ZP . . . R 3 179.09 193.151 172.516 1 0.01 ? C02 6ZP 1101 B 1 
HETATM 3 C C03 6ZP . . . R 3 179.298 193.696 171.201 1 0.01 ? C03 6ZP 1101 B 1 
HETATM 4 C C04 6ZP . . . R 3 179.467 192.796 170.15 1 0.01 ? C04 6ZP 1101 B 1 
HETATM 5 C C05 6ZP . . . R 3 179.664 193.269 168.871 1 0.01 ? C05 6ZP 1101 B 1 
HETATM 6 C C06 6ZP . . . R 3 179.696 194.619 168.635 1 0.01 ? C06 6ZP 1101 B 1 
HETATM 7 C C07 6ZP . . . R 3 179.528 195.516 169.676 1 0.01 ? C07 6ZP 1101 B 1 
HETATM 8 C C08 6ZP . . . R 3 179.338 195.083 170.982 1 0.01 ? C08 6ZP 1101 B 1 
HETATM 9 C C09 6ZP . . . R 3 179.13 196.047 172.093 1 0.01 ? C09 6ZP 1101 B 1 
HETATM 10 C C10 6ZP . . . R 3 177.911 196.059 172.745 1 0.01 ? C10 6ZP 1101 B 1 
HETATM 11 O O11 6ZP . . . R 3 176.984 195.321 172.464 1 0.01 ? O11 6ZP 1101 B 1 
HETATM 12 C C12 6ZP . . . R 3 180.118 196.944 172.496 1 0.01 ? C12 6ZP 1101 B 1 
HETATM 13 C C13 6ZP . . . R 3 179.894 197.841 173.535 1 0.01 ? C13 6ZP 1101 B 1 
HETATM 14 C C14 6ZP . . . R 3 180.954 198.782 173.988 1 0.01 ? C14 6ZP 1101 B 1 
HETATM 15 N N15 6ZP . . . R 3 182.22 198.436 173.709 1 0.01 ? N15 6ZP 1101 B 1 
HETATM 16 C C16 6ZP . . . R 3 183.199 199.249 174.121 1 0.01 ? C16 6ZP 1101 B 1 
HETATM 17 C C17 6ZP . . . R 3 182.983 200.399 174.829 1 0.01 ? C17 6ZP 1101 B 1 
HETATM 18 C C18 6ZP . . . R 3 181.693 200.742 175.127 1 0.01 ? C18 6ZP 1101 B 1 
HETATM 19 C C19 6ZP . . . R 3 180.665 199.923 174.716 1 0.01 ? C19 6ZP 1101 B 1 
HETATM 20 C C20 6ZP . . . R 3 178.698 197.84 174.173 1 0.01 ? C20 6ZP 1101 B 1 
HETATM 21 N N21 6ZP . . . R 3 177.705 196.954 173.782 1 0.01 ? N21 6ZP 1101 B 1 
HETATM 22 C C22 6ZP . . . R 3 176.43 196.959 174.467 1 0.01 ? C22 6ZP 1101 B 1 
HETATM 23 C C23 6ZP . . . R 3 175.533 197.981 174.234 1 0.01 ? C23 6ZP 1101 B 1 
HETATM 24 C C24 6ZP . . . R 3 174.317 197.974 174.892 1 0.01 ? C24 6ZP 1101 B 1 
HETATM 25 C C25 6ZP . . . R 3 174.01 196.964 175.771 1 0.01 ? C25 6ZP 1101 B 1 
HETATM 26 C C26 6ZP . . . R 3 174.908 195.95 176 1 0.01 ? C26 6ZP 1101 B 1 
HETATM 27 C C27 6ZP . . . R 3 176.128 195.94 175.349 1 0.01 ? C27 6ZP 1101 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#