data_8SSI # _model_server_result.job_id kOF-2vf7R4p72WBjmkHBnQ _model_server_result.datetime_utc '2025-02-05 10:55:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ssi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8SSI # _exptl.entry_id 8SSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SSI _cell.length_a 104.517 _cell.length_b 104.517 _cell.length_c 193.801 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H,I 1 1 C,D,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 106 A CYS 292 1_555 F C2 AYE . B AYE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? covale ? covale2 B C GLY 75 B GLY 75 1_555 F N1 AYE . B AYE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale3 C SG CYS 106 C CYS 292 1_555 G C2 AYE . D AYE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.664 ? covale ? covale4 D C GLY 75 D GLY 75 1_555 G N1 AYE . D AYE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 139 n n C1 C2 GOL sing 140 n n C1 H11 GOL sing 141 n n C1 H12 GOL sing 142 n n O1 HO1 GOL sing 143 n n C2 O2 GOL sing 144 n n C2 C3 GOL sing 145 n n C2 H2 GOL sing 146 n n O2 HO2 GOL sing 147 n n C3 O3 GOL sing 148 n n C3 H31 GOL sing 149 n n C3 H32 GOL sing 150 n n O3 HO3 GOL sing 151 n n # _atom_sites.entry_id 8SSI _atom_sites.fract_transf_matrix[1][1] 0.009568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 501 491 GOL GOL . F 4 AYE B 1 101 76 AYE AYE . G 4 AYE D 1 101 76 AYE AYE . H 5 HOH A 1 601 1 HOH HOH . H 5 HOH A 2 602 20 HOH HOH . H 5 HOH A 3 603 19 HOH HOH . H 5 HOH A 4 604 6 HOH HOH . H 5 HOH A 5 605 16 HOH HOH . H 5 HOH A 6 606 10 HOH HOH . H 5 HOH A 7 607 17 HOH HOH . H 5 HOH A 8 608 9 HOH HOH . H 5 HOH A 9 609 8 HOH HOH . H 5 HOH A 10 610 7 HOH HOH . H 5 HOH A 11 611 5 HOH HOH . H 5 HOH A 12 612 18 HOH HOH . H 5 HOH A 13 613 4 HOH HOH . H 5 HOH A 14 614 22 HOH HOH . H 5 HOH A 15 615 15 HOH HOH . H 5 HOH A 16 616 24 HOH HOH . H 5 HOH A 17 617 12 HOH HOH . H 5 HOH A 18 618 21 HOH HOH . H 5 HOH A 19 619 3 HOH HOH . H 5 HOH A 20 620 11 HOH HOH . H 5 HOH A 21 621 14 HOH HOH . I 5 HOH B 1 201 23 HOH HOH . J 5 HOH C 1 501 32 HOH HOH . J 5 HOH C 2 502 30 HOH HOH . J 5 HOH C 3 503 31 HOH HOH . J 5 HOH C 4 504 25 HOH HOH . J 5 HOH C 5 505 33 HOH HOH . J 5 HOH C 6 506 27 HOH HOH . J 5 HOH C 7 507 28 HOH HOH . J 5 HOH C 8 508 36 HOH HOH . J 5 HOH C 9 509 29 HOH HOH . J 5 HOH C 10 510 2 HOH HOH . J 5 HOH C 11 511 34 HOH HOH . K 5 HOH D 1 201 35 HOH HOH . K 5 HOH D 2 202 39 HOH HOH . K 5 HOH D 3 203 38 HOH HOH . K 5 HOH D 4 204 37 HOH HOH . K 5 HOH D 5 205 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -33.825 63.276 13.289 1 84.13 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . E 3 -32.667 63.506 12.54 1 78.97 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . E 3 -34.571 62.079 12.637 1 77.15 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . E 3 -35.35 61.395 13.56 1 82.33 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . E 3 -35.421 62.703 11.501 1 78.27 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . E 3 -35.85 61.649 10.693 1 74.85 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #