data_8SSP # _model_server_result.job_id 0t99KSIxhU72MoWaMiTS9w _model_server_result.datetime_utc '2024-11-24 09:54:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ssp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":510}' # _entry.id 8SSP # _exptl.entry_id 8SSP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.555 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3E)-5-[(2R)-2-METHOXY-2-PHENYLACETYL]PYRROLO[3,4-C]PYRAZOL-3(5H)-YLIDENE]-4-(4-METHYLPIPERAZIN-1-YL)BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SSP _cell.length_a 75.517 _cell.length_b 90.805 _cell.length_c 143.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 N6 O3' _chem_comp.formula_weight 474.555 _chem_comp.id 627 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3E)-5-[(2R)-2-METHOXY-2-PHENYLACETYL]PYRROLO[3,4-C]PYRAZOL-3(5H)-YLIDENE]-4-(4-METHYLPIPERAZIN-1-YL)BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Danusertib;PHA-739358 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C15 627 sing 1 n n N1 C16 627 sing 2 n n N1 C25 627 sing 3 n n N2 N4 627 sing 4 n y N2 HN2 627 sing 5 n n N2 C13 627 sing 6 n y C3 N4 627 doub 7 n y C3 N5 627 sing 8 n n C3 C14 627 sing 9 n y N5 C6 627 sing 10 n n N5 HN5 627 sing 11 n n C6 C7 627 sing 12 n n C6 O8 627 doub 13 n n C7 C9 627 sing 14 n y C7 C12 627 doub 15 n y C9 C10 627 doub 16 n y C9 H9 627 sing 17 n n C10 C24 627 sing 18 n y C10 H10 627 sing 19 n n C11 C12 627 sing 20 n y C11 C24 627 doub 21 n y C11 H11 627 sing 22 n n C12 H12 627 sing 23 n n C13 C14 627 doub 24 n y C13 C16 627 sing 25 n n C14 C15 627 sing 26 n n C15 H15 627 sing 27 n n C15 H151 627 sing 28 n n C16 H16 627 sing 29 n n C16 H161 627 sing 30 n n N17 C18 627 sing 31 n n N17 C22 627 sing 32 n n N17 C24 627 sing 33 n n C18 C19 627 sing 34 n n C18 H181 627 sing 35 n n C18 H182 627 sing 36 n n C19 N20 627 sing 37 n n C19 H191 627 sing 38 n n C19 H192 627 sing 39 n n N20 C21 627 sing 40 n n N20 C23 627 sing 41 n n C21 C22 627 sing 42 n n C21 H211 627 sing 43 n n C21 H212 627 sing 44 n n C22 H221 627 sing 45 n n C22 H222 627 sing 46 n n C23 H231 627 sing 47 n n C23 H232 627 sing 48 n n C23 H233 627 sing 49 n n C25 O26 627 doub 50 n n C25 C20 627 sing 51 n n C27 C28 627 sing 52 n y C27 C29 627 doub 53 n y C27 C20 627 sing 54 n n C28 C31 627 doub 55 n y C28 H28 627 sing 56 n n C29 C33 627 sing 57 n y C29 H29 627 sing 58 n n C31 C35 627 sing 59 n y C31 H31 627 sing 60 n n C33 C35 627 doub 61 n y C33 H33 627 sing 62 n n C20 O34 627 sing 63 n n C20 H20 627 sing 64 n n C35 H35 627 sing 65 n n C36 O34 627 sing 66 n n C36 H361 627 sing 67 n n C36 H362 627 sing 68 n n C36 H363 627 sing 69 n n # _atom_sites.entry_id 8SSP _atom_sites.fract_transf_matrix[1][1] 0.013242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 501 405 EDO EDO . D 4 SO4 A 1 502 408 SO4 SO4 . E 5 MES A 1 503 409 MES MES . F 3 EDO A 1 504 410 EDO EDO . G 3 EDO A 1 505 414 EDO EDO . H 6 PO4 A 1 506 415 PO4 PO4 . I 7 PDO A 1 507 416 PDO PDO . J 3 EDO A 1 508 417 EDO EDO . K 3 EDO A 1 509 418 EDO EDO . L 8 627 A 1 510 1 627 627 . M 4 SO4 A 1 511 3 SO4 SO4 . N 9 HOH A 1 601 14 HOH HOH . N 9 HOH A 2 602 92 HOH HOH . N 9 HOH A 3 603 39 HOH HOH . N 9 HOH A 4 604 9 HOH HOH . N 9 HOH A 5 605 123 HOH HOH . N 9 HOH A 6 606 18 HOH HOH . N 9 HOH A 7 607 13 HOH HOH . N 9 HOH A 8 608 37 HOH HOH . N 9 HOH A 9 609 41 HOH HOH . N 9 HOH A 10 610 65 HOH HOH . N 9 HOH A 11 611 103 HOH HOH . N 9 HOH A 12 612 32 HOH HOH . N 9 HOH A 13 613 51 HOH HOH . N 9 HOH A 14 614 76 HOH HOH . N 9 HOH A 15 615 7 HOH HOH . N 9 HOH A 16 616 50 HOH HOH . N 9 HOH A 17 617 40 HOH HOH . N 9 HOH A 18 618 87 HOH HOH . N 9 HOH A 19 619 47 HOH HOH . N 9 HOH A 20 620 1 HOH HOH . N 9 HOH A 21 621 23 HOH HOH . N 9 HOH A 22 622 24 HOH HOH . N 9 HOH A 23 623 2 HOH HOH . N 9 HOH A 24 624 66 HOH HOH . N 9 HOH A 25 625 44 HOH HOH . N 9 HOH A 26 626 26 HOH HOH . N 9 HOH A 27 627 64 HOH HOH . N 9 HOH A 28 628 4 HOH HOH . N 9 HOH A 29 629 68 HOH HOH . N 9 HOH A 30 630 59 HOH HOH . N 9 HOH A 31 631 42 HOH HOH . N 9 HOH A 32 632 52 HOH HOH . N 9 HOH A 33 633 62 HOH HOH . N 9 HOH A 34 634 122 HOH HOH . N 9 HOH A 35 635 5 HOH HOH . N 9 HOH A 36 636 6 HOH HOH . N 9 HOH A 37 637 12 HOH HOH . N 9 HOH A 38 638 70 HOH HOH . N 9 HOH A 39 639 8 HOH HOH . N 9 HOH A 40 640 11 HOH HOH . N 9 HOH A 41 641 48 HOH HOH . N 9 HOH A 42 642 21 HOH HOH . N 9 HOH A 43 643 30 HOH HOH . N 9 HOH A 44 644 15 HOH HOH . N 9 HOH A 45 645 38 HOH HOH . N 9 HOH A 46 646 19 HOH HOH . N 9 HOH A 47 647 17 HOH HOH . N 9 HOH A 48 648 33 HOH HOH . N 9 HOH A 49 649 60 HOH HOH . N 9 HOH A 50 650 25 HOH HOH . N 9 HOH A 51 651 108 HOH HOH . N 9 HOH A 52 652 117 HOH HOH . N 9 HOH A 53 653 80 HOH HOH . N 9 HOH A 54 654 85 HOH HOH . N 9 HOH A 55 655 120 HOH HOH . N 9 HOH A 56 656 112 HOH HOH . N 9 HOH A 57 657 16 HOH HOH . N 9 HOH A 58 658 93 HOH HOH . N 9 HOH A 59 659 69 HOH HOH . N 9 HOH A 60 660 101 HOH HOH . N 9 HOH A 61 661 49 HOH HOH . N 9 HOH A 62 662 113 HOH HOH . N 9 HOH A 63 663 10 HOH HOH . N 9 HOH A 64 664 104 HOH HOH . N 9 HOH A 65 665 94 HOH HOH . N 9 HOH A 66 666 119 HOH HOH . N 9 HOH A 67 667 109 HOH HOH . N 9 HOH A 68 668 54 HOH HOH . N 9 HOH A 69 669 95 HOH HOH . N 9 HOH A 70 670 56 HOH HOH . N 9 HOH A 71 671 96 HOH HOH . N 9 HOH A 72 672 53 HOH HOH . N 9 HOH A 73 673 61 HOH HOH . N 9 HOH A 74 674 121 HOH HOH . N 9 HOH A 75 675 43 HOH HOH . N 9 HOH A 76 676 89 HOH HOH . N 9 HOH A 77 677 84 HOH HOH . N 9 HOH A 78 678 63 HOH HOH . N 9 HOH A 79 679 78 HOH HOH . N 9 HOH A 80 680 118 HOH HOH . N 9 HOH A 81 681 102 HOH HOH . N 9 HOH A 82 682 111 HOH HOH . N 9 HOH A 83 683 57 HOH HOH . N 9 HOH A 84 684 82 HOH HOH . N 9 HOH A 85 685 58 HOH HOH . N 9 HOH A 86 686 77 HOH HOH . N 9 HOH A 87 687 116 HOH HOH . N 9 HOH A 88 688 86 HOH HOH . N 9 HOH A 89 689 46 HOH HOH . N 9 HOH A 90 690 90 HOH HOH . N 9 HOH A 91 691 79 HOH HOH . N 9 HOH A 92 692 106 HOH HOH . N 9 HOH A 93 693 100 HOH HOH . N 9 HOH A 94 694 99 HOH HOH . N 9 HOH A 95 695 97 HOH HOH . N 9 HOH A 96 696 83 HOH HOH . N 9 HOH A 97 697 105 HOH HOH . N 9 HOH A 98 698 110 HOH HOH . N 9 HOH A 99 699 98 HOH HOH . N 9 HOH A 100 700 73 HOH HOH . N 9 HOH A 101 701 91 HOH HOH . O 9 HOH B 1 101 31 HOH HOH . O 9 HOH B 2 102 28 HOH HOH . O 9 HOH B 3 103 20 HOH HOH . O 9 HOH B 4 104 34 HOH HOH . O 9 HOH B 5 105 72 HOH HOH . O 9 HOH B 6 106 67 HOH HOH . O 9 HOH B 7 107 35 HOH HOH . O 9 HOH B 8 108 115 HOH HOH . O 9 HOH B 9 109 114 HOH HOH . O 9 HOH B 10 110 71 HOH HOH . O 9 HOH B 11 111 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 627 . . . L 8 -21.518 -17.46 -27.108 1 27.33 ? N1 627 510 A 1 HETATM 2 N N2 627 . . . L 8 -18.628 -15.327 -27.199 1 25.81 ? N2 627 510 A 1 HETATM 3 C C3 627 . . . L 8 -19.346 -15.31 -29.201 1 28.92 ? C3 627 510 A 1 HETATM 4 N N4 627 . . . L 8 -18.383 -14.839 -28.425 1 26.85 ? N4 627 510 A 1 HETATM 5 N N5 627 . . . L 8 -19.446 -15.019 -30.56 1 21.79 ? N5 627 510 A 1 HETATM 6 C C6 627 . . . L 8 -20.575 -14.935 -31.324 1 24.46 ? C6 627 510 A 1 HETATM 7 C C7 627 . . . L 8 -20.415 -14.584 -32.756 1 27.2 ? C7 627 510 A 1 HETATM 8 O O8 627 . . . L 8 -21.693 -15.114 -30.877 1 47.57 ? O8 627 510 A 1 HETATM 9 C C9 627 . . . L 8 -19.249 -13.955 -33.194 1 26.3 ? C9 627 510 A 1 HETATM 10 C C10 627 . . . L 8 -19.071 -13.6 -34.519 1 29.02 ? C10 627 510 A 1 HETATM 11 C C11 627 . . . L 8 -21.239 -14.485 -35.031 1 33.12 ? C11 627 510 A 1 HETATM 12 C C12 627 . . . L 8 -21.402 -14.83 -33.708 1 29.35 ? C12 627 510 A 1 HETATM 13 C C13 627 . . . L 8 -19.722 -16.088 -27.184 1 21.37 ? C13 627 510 A 1 HETATM 14 C C14 627 . . . L 8 -20.229 -16.113 -28.445 1 21.42 ? C14 627 510 A 1 HETATM 15 C C15 627 . . . L 8 -21.456 -16.953 -28.494 1 23.53 ? C15 627 510 A 1 HETATM 16 C C16 627 . . . L 8 -20.512 -16.879 -26.208 1 21.29 ? C16 627 510 A 1 HETATM 17 N N17 627 . . . L 8 -19.925 -13.513 -36.813 1 32.1 ? N17 627 510 A 1 HETATM 18 C C18 627 . . . L 8 -21.086 -13.589 -37.694 1 33.06 ? C18 627 510 A 1 HETATM 19 C C19 627 . . . L 8 -20.932 -12.663 -38.893 1 45.16 ? C19 627 510 A 1 HETATM 20 N N20 627 . . . L 8 -19.686 -12.817 -39.613 1 53.73 ? N20 627 510 A 1 HETATM 21 C C21 627 . . . L 8 -18.586 -12.635 -38.687 1 50.63 ? C21 627 510 A 1 HETATM 22 C C22 627 . . . L 8 -18.618 -13.538 -37.456 1 35.17 ? C22 627 510 A 1 HETATM 23 C C23 627 . . . L 8 -19.597 -11.992 -40.801 1 47.36 ? C23 627 510 A 1 HETATM 24 C C24 627 . . . L 8 -20.065 -13.856 -35.489 1 25.79 ? C24 627 510 A 1 HETATM 25 C C25 627 . . . L 8 -22.439 -18.379 -26.759 1 31.44 ? C25 627 510 A 1 HETATM 26 O O26 627 . . . L 8 -22.508 -18.814 -25.621 1 37.82 ? O26 627 510 A 1 HETATM 27 C C27 627 . . . L 8 -22.7 -19.99 -28.603 1 37.14 ? C27 627 510 A 1 HETATM 28 C C28 627 . . . L 8 -22.837 -20.113 -29.981 1 32.75 ? C28 627 510 A 1 HETATM 29 C C29 627 . . . L 8 -21.889 -20.893 -27.917 1 37.41 ? C29 627 510 A 1 HETATM 30 C C31 627 . . . L 8 -22.181 -21.128 -30.668 1 32.33 ? C31 627 510 A 1 HETATM 31 C C33 627 . . . L 8 -21.234 -21.905 -28.6 1 37.62 ? C33 627 510 A 1 HETATM 32 C C20 627 . . . L 8 -23.401 -18.882 -27.839 1 31.66 ? C20 627 510 A 1 HETATM 33 C C35 627 . . . L 8 -21.378 -22.024 -29.978 1 38.48 ? C35 627 510 A 1 HETATM 34 C C36 627 . . . L 8 -25.694 -19.366 -27.999 1 30.29 ? C36 627 510 A 1 HETATM 35 O O34 627 . . . L 8 -24.549 -19.324 -27.177 1 47.15 ? O34 627 510 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #