data_8SSV # _model_server_result.job_id lYMiey4RRC0c9noi5g21Tg _model_server_result.datetime_utc '2024-11-28 06:40:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ssv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":405}' # _entry.id 8SSV # _exptl.entry_id 8SSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.2 _cell.angle_gamma 90 _cell.entry_id 8SSV _cell.length_a 51.902 _cell.length_b 65.429 _cell.length_c 75.376 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,Q 1 1 B,H,I,J,K,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 152 A ASN 216 1_555 G CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc2 A OD2 ASP 198 A ASP 262 1_555 P CA CA . B CA 409 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc3 G CA CA . A CA 405 1_555 Q O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc4 G CA CA . A CA 405 2_546 B OD2 ASP 198 B ASP 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc5 G CA CA . A CA 405 1_555 R O HOH . B HOH 573 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc6 G CA CA . A CA 405 1_555 R O HOH . B HOH 586 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc7 Q O HOH . A HOH 558 2_545 P CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc8 B O SER 45 B SER 109 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc9 B OG SER 45 B SER 109 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc10 B OD2 ASP 49 B ASP 113 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc11 B OD1 ASP 49 B ASP 113 1_555 N MG MG . B MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc12 B O ASN 152 B ASN 216 1_555 P CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc13 I CA CA . B CA 402 1_555 R O HOH . B HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? metalc ? metalc14 N MG MG . B MG 407 1_555 R O HOH . B HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc15 O O ACT . B ACT 408 1_555 P CA CA . B CA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 295 n n C1 C2 PEG sing 296 n n C1 H11 PEG sing 297 n n C1 H12 PEG sing 298 n n O1 HO1 PEG sing 299 n n C2 O2 PEG sing 300 n n C2 H21 PEG sing 301 n n C2 H22 PEG sing 302 n n O2 C3 PEG sing 303 n n C3 C4 PEG sing 304 n n C3 H31 PEG sing 305 n n C3 H32 PEG sing 306 n n C4 O4 PEG sing 307 n n C4 H41 PEG sing 308 n n C4 H42 PEG sing 309 n n O4 HO4 PEG sing 310 n n # _atom_sites.entry_id 8SSV _atom_sites.fract_transf_matrix[1][1] 0.019267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001753 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 H71 A 1 401 401 H71 H71 . D 3 PG4 A 1 402 501 PG4 PG4 . E 3 PG4 A 1 403 601 PG4 PG4 . F 3 PG4 A 1 404 701 PG4 PG4 . G 4 CA A 1 405 1 CA CA . H 2 H71 B 1 401 401 H71 H71 . I 4 CA B 1 402 501 CA CA . J 5 ACT B 1 403 601 ACT ACT . K 3 PG4 B 1 404 701 PG4 PG4 . L 6 PEG B 1 405 801 PEG PEG . M 6 PEG B 1 406 901 PEG PEG . N 7 MG B 1 407 1001 MG MG . O 5 ACT B 1 408 1101 ACT ACT . P 4 CA B 1 409 2 CA CA . Q 8 HOH A 1 501 233 HOH HOH . Q 8 HOH A 2 502 102 HOH HOH . Q 8 HOH A 3 503 231 HOH HOH . Q 8 HOH A 4 504 84 HOH HOH . Q 8 HOH A 5 505 128 HOH HOH . Q 8 HOH A 6 506 27 HOH HOH . Q 8 HOH A 7 507 217 HOH HOH . Q 8 HOH A 8 508 153 HOH HOH . Q 8 HOH A 9 509 57 HOH HOH . Q 8 HOH A 10 510 108 HOH HOH . Q 8 HOH A 11 511 82 HOH HOH . Q 8 HOH A 12 512 204 HOH HOH . Q 8 HOH A 13 513 10 HOH HOH . Q 8 HOH A 14 514 190 HOH HOH . Q 8 HOH A 15 515 189 HOH HOH . Q 8 HOH A 16 516 229 HOH HOH . Q 8 HOH A 17 517 37 HOH HOH . Q 8 HOH A 18 518 88 HOH HOH . Q 8 HOH A 19 519 225 HOH HOH . Q 8 HOH A 20 520 6 HOH HOH . Q 8 HOH A 21 521 20 HOH HOH . Q 8 HOH A 22 522 38 HOH HOH . Q 8 HOH A 23 523 83 HOH HOH . Q 8 HOH A 24 524 230 HOH HOH . Q 8 HOH A 25 525 54 HOH HOH . Q 8 HOH A 26 526 114 HOH HOH . Q 8 HOH A 27 527 64 HOH HOH . Q 8 HOH A 28 528 33 HOH HOH . Q 8 HOH A 29 529 18 HOH HOH . Q 8 HOH A 30 530 245 HOH HOH . Q 8 HOH A 31 531 117 HOH HOH . Q 8 HOH A 32 532 154 HOH HOH . Q 8 HOH A 33 533 69 HOH HOH . Q 8 HOH A 34 534 22 HOH HOH . Q 8 HOH A 35 535 36 HOH HOH . Q 8 HOH A 36 536 91 HOH HOH . Q 8 HOH A 37 537 221 HOH HOH . Q 8 HOH A 38 538 158 HOH HOH . Q 8 HOH A 39 539 243 HOH HOH . Q 8 HOH A 40 540 51 HOH HOH . Q 8 HOH A 41 541 74 HOH HOH . Q 8 HOH A 42 542 13 HOH HOH . Q 8 HOH A 43 543 17 HOH HOH . Q 8 HOH A 44 544 24 HOH HOH . Q 8 HOH A 45 545 16 HOH HOH . Q 8 HOH A 46 546 25 HOH HOH . Q 8 HOH A 47 547 144 HOH HOH . Q 8 HOH A 48 548 253 HOH HOH . Q 8 HOH A 49 549 119 HOH HOH . Q 8 HOH A 50 550 206 HOH HOH . Q 8 HOH A 51 551 168 HOH HOH . Q 8 HOH A 52 552 178 HOH HOH . Q 8 HOH A 53 553 61 HOH HOH . Q 8 HOH A 54 554 180 HOH HOH . Q 8 HOH A 55 555 181 HOH HOH . Q 8 HOH A 56 556 81 HOH HOH . Q 8 HOH A 57 557 166 HOH HOH . Q 8 HOH A 58 558 250 HOH HOH . Q 8 HOH A 59 559 207 HOH HOH . Q 8 HOH A 60 560 92 HOH HOH . Q 8 HOH A 61 561 151 HOH HOH . Q 8 HOH A 62 562 223 HOH HOH . Q 8 HOH A 63 563 32 HOH HOH . Q 8 HOH A 64 564 210 HOH HOH . Q 8 HOH A 65 565 127 HOH HOH . Q 8 HOH A 66 566 202 HOH HOH . Q 8 HOH A 67 567 58 HOH HOH . Q 8 HOH A 68 568 105 HOH HOH . Q 8 HOH A 69 569 234 HOH HOH . Q 8 HOH A 70 570 123 HOH HOH . Q 8 HOH A 71 571 89 HOH HOH . Q 8 HOH A 72 572 39 HOH HOH . Q 8 HOH A 73 573 242 HOH HOH . Q 8 HOH A 74 574 73 HOH HOH . Q 8 HOH A 75 575 126 HOH HOH . Q 8 HOH A 76 576 205 HOH HOH . Q 8 HOH A 77 577 196 HOH HOH . Q 8 HOH A 78 578 28 HOH HOH . Q 8 HOH A 79 579 244 HOH HOH . Q 8 HOH A 80 580 97 HOH HOH . Q 8 HOH A 81 581 41 HOH HOH . Q 8 HOH A 82 582 209 HOH HOH . Q 8 HOH A 83 583 149 HOH HOH . Q 8 HOH A 84 584 115 HOH HOH . Q 8 HOH A 85 585 201 HOH HOH . Q 8 HOH A 86 586 170 HOH HOH . Q 8 HOH A 87 587 203 HOH HOH . Q 8 HOH A 88 588 152 HOH HOH . Q 8 HOH A 89 589 236 HOH HOH . Q 8 HOH A 90 590 208 HOH HOH . Q 8 HOH A 91 591 197 HOH HOH . Q 8 HOH A 92 592 218 HOH HOH . Q 8 HOH A 93 593 76 HOH HOH . Q 8 HOH A 94 594 109 HOH HOH . Q 8 HOH A 95 595 132 HOH HOH . R 8 HOH B 1 501 182 HOH HOH . R 8 HOH B 2 502 174 HOH HOH . R 8 HOH B 3 503 224 HOH HOH . R 8 HOH B 4 504 106 HOH HOH . R 8 HOH B 5 505 252 HOH HOH . R 8 HOH B 6 506 163 HOH HOH . R 8 HOH B 7 507 66 HOH HOH . R 8 HOH B 8 508 235 HOH HOH . R 8 HOH B 9 509 80 HOH HOH . R 8 HOH B 10 510 14 HOH HOH . R 8 HOH B 11 511 15 HOH HOH . R 8 HOH B 12 512 26 HOH HOH . R 8 HOH B 13 513 216 HOH HOH . R 8 HOH B 14 514 35 HOH HOH . R 8 HOH B 15 515 34 HOH HOH . R 8 HOH B 16 516 104 HOH HOH . R 8 HOH B 17 517 78 HOH HOH . R 8 HOH B 18 518 11 HOH HOH . R 8 HOH B 19 519 53 HOH HOH . R 8 HOH B 20 520 65 HOH HOH . R 8 HOH B 21 521 188 HOH HOH . R 8 HOH B 22 522 184 HOH HOH . R 8 HOH B 23 523 215 HOH HOH . R 8 HOH B 24 524 8 HOH HOH . R 8 HOH B 25 525 23 HOH HOH . R 8 HOH B 26 526 40 HOH HOH . R 8 HOH B 27 527 5 HOH HOH . R 8 HOH B 28 528 85 HOH HOH . R 8 HOH B 29 529 86 HOH HOH . R 8 HOH B 30 530 99 HOH HOH . R 8 HOH B 31 531 55 HOH HOH . R 8 HOH B 32 532 7 HOH HOH . R 8 HOH B 33 533 96 HOH HOH . R 8 HOH B 34 534 118 HOH HOH . R 8 HOH B 35 535 240 HOH HOH . R 8 HOH B 36 536 141 HOH HOH . R 8 HOH B 37 537 103 HOH HOH . R 8 HOH B 38 538 2 HOH HOH . R 8 HOH B 39 539 247 HOH HOH . R 8 HOH B 40 540 12 HOH HOH . R 8 HOH B 41 541 59 HOH HOH . R 8 HOH B 42 542 239 HOH HOH . R 8 HOH B 43 543 200 HOH HOH . R 8 HOH B 44 544 98 HOH HOH . R 8 HOH B 45 545 19 HOH HOH . R 8 HOH B 46 546 29 HOH HOH . R 8 HOH B 47 547 4 HOH HOH . R 8 HOH B 48 548 198 HOH HOH . R 8 HOH B 49 549 147 HOH HOH . R 8 HOH B 50 550 212 HOH HOH . R 8 HOH B 51 551 113 HOH HOH . R 8 HOH B 52 552 169 HOH HOH . R 8 HOH B 53 553 192 HOH HOH . R 8 HOH B 54 554 186 HOH HOH . R 8 HOH B 55 555 171 HOH HOH . R 8 HOH B 56 556 220 HOH HOH . R 8 HOH B 57 557 90 HOH HOH . R 8 HOH B 58 558 124 HOH HOH . R 8 HOH B 59 559 121 HOH HOH . R 8 HOH B 60 560 111 HOH HOH . R 8 HOH B 61 561 173 HOH HOH . R 8 HOH B 62 562 219 HOH HOH . R 8 HOH B 63 563 101 HOH HOH . R 8 HOH B 64 564 187 HOH HOH . R 8 HOH B 65 565 60 HOH HOH . R 8 HOH B 66 566 9 HOH HOH . R 8 HOH B 67 567 21 HOH HOH . R 8 HOH B 68 568 227 HOH HOH . R 8 HOH B 69 569 237 HOH HOH . R 8 HOH B 70 570 107 HOH HOH . R 8 HOH B 71 571 142 HOH HOH . R 8 HOH B 72 572 254 HOH HOH . R 8 HOH B 73 573 164 HOH HOH . R 8 HOH B 74 574 155 HOH HOH . R 8 HOH B 75 575 63 HOH HOH . R 8 HOH B 76 576 56 HOH HOH . R 8 HOH B 77 577 112 HOH HOH . R 8 HOH B 78 578 116 HOH HOH . R 8 HOH B 79 579 257 HOH HOH . R 8 HOH B 80 580 87 HOH HOH . R 8 HOH B 81 581 100 HOH HOH . R 8 HOH B 82 582 191 HOH HOH . R 8 HOH B 83 583 259 HOH HOH . R 8 HOH B 84 584 72 HOH HOH . R 8 HOH B 85 585 30 HOH HOH . R 8 HOH B 86 586 241 HOH HOH . R 8 HOH B 87 587 161 HOH HOH . R 8 HOH B 88 588 249 HOH HOH . R 8 HOH B 89 589 251 HOH HOH . R 8 HOH B 90 590 143 HOH HOH . R 8 HOH B 91 591 213 HOH HOH . R 8 HOH B 92 592 211 HOH HOH . R 8 HOH B 93 593 255 HOH HOH . R 8 HOH B 94 594 162 HOH HOH . R 8 HOH B 95 595 129 HOH HOH . R 8 HOH B 96 596 238 HOH HOH . R 8 HOH B 97 597 222 HOH HOH . R 8 HOH B 98 598 258 HOH HOH . R 8 HOH B 99 599 256 HOH HOH . R 8 HOH B 100 600 177 HOH HOH . R 8 HOH B 101 601 120 HOH HOH . R 8 HOH B 102 602 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . L 6 -6.819 -44.19 12.953 1 32.6 ? C1 PEG 405 B 1 HETATM 2 O O1 PEG . . . L 6 -5.945 -45.313 12.959 1 44.22 ? O1 PEG 405 B 1 HETATM 3 C C2 PEG . . . L 6 -7.61 -44.11 11.682 1 36.54 ? C2 PEG 405 B 1 HETATM 4 O O2 PEG . . . L 6 -7.763 -42.751 11.298 1 60.42 ? O2 PEG 405 B 1 HETATM 5 C C3 PEG . . . L 6 -6.643 -42.243 10.583 1 55.36 ? C3 PEG 405 B 1 HETATM 6 C C4 PEG . . . L 6 -6.781 -42.55 9.12 1 53.87 ? C4 PEG 405 B 1 HETATM 7 O O4 PEG . . . L 6 -6.011 -43.681 8.739 1 49.09 ? O4 PEG 405 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 7 #