data_8ST0 # _model_server_result.job_id lrDbsdivk-zNAkRjKJ6xLQ _model_server_result.datetime_utc '2024-12-23 06:39:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8st0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":703}' # _entry.id 8ST0 # _exptl.entry_id 8ST0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 114.229 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ST0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ST0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n L NAG 1 L 1 NAG B 701 NAG 5 n L NAG 2 L 2 NAG B 702 NAG 5 n L BMA 3 L 3 BMA B 703 BMA 5 n M NAG 1 M 1 NAG C 701 NAG 5 n M NAG 2 M 2 NAG C 702 NAG 5 n M BMA 3 M 3 BMA C 703 BMA 5 n N NAG 1 N 1 NAG E 701 NAG 5 n N NAG 2 N 2 NAG E 702 NAG 5 n N BMA 3 N 3 BMA E 703 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 135 A CYS 135 1_555 A SG CYS 149 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 199 A CYS 199 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 130 B CYS 130 1_555 B SG CYS 144 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 C SG CYS 130 C CYS 130 1_555 C SG CYS 144 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 D SG CYS 135 D CYS 135 1_555 D SG CYS 149 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 D SG CYS 199 D CYS 199 1_555 D SG CYS 200 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 E SG CYS 130 E CYS 130 1_555 E SG CYS 144 E CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf8 F SG CYS 42 F CYS 23 1_555 F SG CYS 112 F CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 F SG CYS 158 F CYS 139 1_555 F SG CYS 218 F CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 G SG CYS 41 G CYS 23 1_555 G SG CYS 115 G CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 G SG CYS 165 G CYS 147 1_555 G SG CYS 220 G CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 H SG CYS 42 H CYS 23 1_555 H SG CYS 112 H CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 H SG CYS 158 H CYS 139 1_555 H SG CYS 218 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 I SG CYS 41 I CYS 23 1_555 I SG CYS 115 I CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf15 I SG CYS 165 I CYS 147 1_555 I SG CYS 220 I CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 J SG CYS 42 J CYS 23 1_555 J SG CYS 112 J CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 J SG CYS 158 J CYS 139 1_555 J SG CYS 218 J CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf18 K SG CYS 41 K CYS 23 1_555 K SG CYS 115 K CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf19 K SG CYS 165 K CYS 147 1_555 K SG CYS 220 K CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 148 A ASN 148 1_555 O C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B ND2 ASN 143 B ASN 143 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 C ND2 ASN 143 C ASN 143 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 D ND2 ASN 148 D ASN 148 1_555 R C1 NAG . D NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 E ND2 ASN 143 E ASN 143 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 L O4 NAG . L NAG 2 1_555 L C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale11 N O4 NAG . N NAG 2 1_555 N C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 316 n n C1 H11 OCT sing 317 n n C1 H12 OCT sing 318 n n C1 H13 OCT sing 319 n n C2 C3 OCT sing 320 n n C2 H21 OCT sing 321 n n C2 H22 OCT sing 322 n n C3 C4 OCT sing 323 n n C3 H31 OCT sing 324 n n C3 H32 OCT sing 325 n n C4 C5 OCT sing 326 n n C4 H41 OCT sing 327 n n C4 H42 OCT sing 328 n n C5 C6 OCT sing 329 n n C5 H51 OCT sing 330 n n C5 H52 OCT sing 331 n n C6 C7 OCT sing 332 n n C6 H61 OCT sing 333 n n C6 H62 OCT sing 334 n n C7 C8 OCT sing 335 n n C7 H71 OCT sing 336 n n C7 H72 OCT sing 337 n n C8 H81 OCT sing 338 n n C8 H82 OCT sing 339 n n C8 H83 OCT sing 340 n n # _atom_sites.entry_id 8ST0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 6 NAG A 1 701 701 NAG NAG . P 7 ACH A 1 702 702 ACH ACH . Q 8 OCT A 1 703 901 OCT OCT . R 6 NAG D 1 701 701 NAG NAG . S 7 ACH D 1 702 702 ACH ACH . T 9 NA E 1 501 705 NA NA . U 10 HOH A 1 801 802 HOH HOH . U 10 HOH A 2 802 801 HOH HOH . U 10 HOH A 3 803 801 HOH HOH . V 10 HOH C 1 801 801 HOH HOH . V 10 HOH C 2 802 801 HOH HOH . W 10 HOH D 1 801 801 HOH HOH . X 10 HOH E 1 601 802 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . Q 8 121.997 174.245 129.835 1 41.43 ? C1 OCT 703 A 1 HETATM 2 C C2 OCT . . . Q 8 122.579 174.296 131.227 1 46.55 ? C2 OCT 703 A 1 HETATM 3 C C3 OCT . . . Q 8 123.916 173.588 131.334 1 44.75 ? C3 OCT 703 A 1 HETATM 4 C C4 OCT . . . Q 8 124.543 173.69 132.712 1 42.91 ? C4 OCT 703 A 1 HETATM 5 C C5 OCT . . . Q 8 125.832 172.903 132.854 1 40.58 ? C5 OCT 703 A 1 HETATM 6 C C6 OCT . . . Q 8 126.469 173.029 134.225 1 42.82 ? C6 OCT 703 A 1 HETATM 7 C C7 OCT . . . Q 8 127.839 172.387 134.318 1 43.07 ? C7 OCT 703 A 1 HETATM 8 C C8 OCT . . . Q 8 128.456 172.532 135.688 1 43.76 ? C8 OCT 703 A 1 HETATM 9 H H11 OCT . . . Q 8 121.116 174.673 129.808 1 43.09 ? H11 OCT 703 A 1 HETATM 10 H H12 OCT . . . Q 8 121.895 173.316 129.544 1 43.52 ? H12 OCT 703 A 1 HETATM 11 H H13 OCT . . . Q 8 122.58 174.703 129.196 1 43.52 ? H13 OCT 703 A 1 HETATM 12 H H21 OCT . . . Q 8 121.942 173.89 131.85 1 44.26 ? H21 OCT 703 A 1 HETATM 13 H H22 OCT . . . Q 8 122.68 175.233 131.494 1 44.04 ? H22 OCT 703 A 1 HETATM 14 H H31 OCT . . . Q 8 124.532 173.963 130.672 1 44.1 ? H31 OCT 703 A 1 HETATM 15 H H32 OCT . . . Q 8 123.798 172.643 131.105 1 43.59 ? H32 OCT 703 A 1 HETATM 16 H H41 OCT . . . Q 8 123.9 173.379 133.382 1 43.91 ? H41 OCT 703 A 1 HETATM 17 H H42 OCT . . . Q 8 124.722 174.632 132.911 1 43.97 ? H42 OCT 703 A 1 HETATM 18 H H51 OCT . . . Q 8 126.469 173.202 132.174 1 43.64 ? H51 OCT 703 A 1 HETATM 19 H H52 OCT . . . Q 8 125.65 171.958 132.672 1 43.14 ? H52 OCT 703 A 1 HETATM 20 H H61 OCT . . . Q 8 125.879 172.62 134.891 1 43.38 ? H61 OCT 703 A 1 HETATM 21 H H62 OCT . . . Q 8 126.541 173.977 134.459 1 43.96 ? H62 OCT 703 A 1 HETATM 22 H H71 OCT . . . Q 8 128.437 172.793 133.657 1 43.64 ? H71 OCT 703 A 1 HETATM 23 H H72 OCT . . . Q 8 127.773 171.436 134.098 1 43.42 ? H72 OCT 703 A 1 HETATM 24 H H81 OCT . . . Q 8 129.355 172.144 135.698 1 43.57 ? H81 OCT 703 A 1 HETATM 25 H H82 OCT . . . Q 8 127.919 172.071 136.364 1 43.55 ? H82 OCT 703 A 1 HETATM 26 H H83 OCT . . . Q 8 128.527 173.474 135.942 1 43.55 ? H83 OCT 703 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #