data_8ST4 # _model_server_result.job_id ZwfX-wQEHjcWB0gfXh9j5A _model_server_result.datetime_utc '2024-11-08 13:26:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8st4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":704}' # _entry.id 8ST4 # _exptl.entry_id 8ST4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 146.207 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETYLCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ST4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ST4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details undecameric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 R N N ? 7 W N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n L NAG 1 L 1 NAG B 701 NAG 5 n L NAG 2 L 2 NAG B 702 NAG 5 n L BMA 3 L 3 BMA B 703 BMA 5 n M NAG 1 M 1 NAG C 701 NAG 5 n M NAG 2 M 2 NAG C 702 NAG 5 n M BMA 3 M 3 BMA C 703 BMA 5 n N NAG 1 N 1 NAG E 701 NAG 5 n N NAG 2 N 2 NAG E 702 NAG 5 n N BMA 3 N 3 BMA E 703 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 135 A CYS 135 1_555 A SG CYS 149 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 199 A CYS 199 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 130 B CYS 130 1_555 B SG CYS 144 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 130 C CYS 130 1_555 C SG CYS 144 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 D SG CYS 135 D CYS 135 1_555 D SG CYS 149 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 D SG CYS 199 D CYS 199 1_555 D SG CYS 200 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 E SG CYS 130 E CYS 130 1_555 E SG CYS 144 E CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 F SG CYS 42 F CYS 23 1_555 F SG CYS 112 F CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 F SG CYS 158 F CYS 139 1_555 F SG CYS 218 F CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 G SG CYS 41 G CYS 23 1_555 G SG CYS 115 G CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 G SG CYS 165 G CYS 147 1_555 G SG CYS 220 G CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 H SG CYS 42 H CYS 23 1_555 H SG CYS 112 H CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 H SG CYS 158 H CYS 139 1_555 H SG CYS 218 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 I SG CYS 41 I CYS 23 1_555 I SG CYS 115 I CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 I SG CYS 165 I CYS 147 1_555 I SG CYS 220 I CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 J SG CYS 42 J CYS 23 1_555 J SG CYS 112 J CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 J SG CYS 158 J CYS 139 1_555 J SG CYS 218 J CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 K SG CYS 41 K CYS 23 1_555 K SG CYS 115 K CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 K SG CYS 165 K CYS 147 1_555 K SG CYS 220 K CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 31 A ASN 31 1_555 O C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 81 A ASN 81 1_555 P C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale3 A ND2 ASN 148 A ASN 148 1_555 Q C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B ND2 ASN 143 B ASN 143 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 C ND2 ASN 143 C ASN 143 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 D ND2 ASN 31 D ASN 31 1_555 T C1 NAG . D NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 D ND2 ASN 81 D ASN 81 1_555 U C1 NAG . D NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 D ND2 ASN 148 D ASN 148 1_555 V C1 NAG . D NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 E ND2 ASN 143 E ASN 143 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale11 L O4 NAG . L NAG 2 1_555 L C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale13 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale15 N O4 NAG . N NAG 2 1_555 N C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C7 H16 N O2 1' _chem_comp.formula_weight 146.207 _chem_comp.id ACH _chem_comp.mon_nstd_flag . _chem_comp.name ACETYLCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ACH sing 1 n n N1 C8 ACH sing 2 n n N1 C9 ACH sing 3 n n N1 C10 ACH sing 4 n n C2 C3 ACH sing 5 n n C2 H21 ACH sing 6 n n C2 H22 ACH sing 7 n n C3 O4 ACH sing 8 n n C3 H31 ACH sing 9 n n C3 H32 ACH sing 10 n n O4 C5 ACH sing 11 n n C5 O7 ACH doub 12 n n C5 C6 ACH sing 13 n n C6 H61 ACH sing 14 n n C6 H62 ACH sing 15 n n C6 H63 ACH sing 16 n n C8 H81 ACH sing 17 n n C8 H82 ACH sing 18 n n C8 H83 ACH sing 19 n n C9 H91 ACH sing 20 n n C9 H92 ACH sing 21 n n C9 H93 ACH sing 22 n n C10 H101 ACH sing 23 n n C10 H102 ACH sing 24 n n C10 H103 ACH sing 25 n n # _atom_sites.entry_id 8ST4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 6 NAG A 1 701 701 NAG NAG . P 6 NAG A 1 702 702 NAG NAG . Q 6 NAG A 1 703 704 NAG NAG . R 7 ACH A 1 704 803 ACH ACH . S 8 NA B 1 501 707 NA NA . T 6 NAG D 1 701 701 NAG NAG . U 6 NAG D 1 702 702 NAG NAG . V 6 NAG D 1 703 704 NAG NAG . W 7 ACH D 1 704 803 ACH ACH . X 9 HOH A 1 801 801 HOH HOH . Y 9 HOH B 1 601 802 HOH HOH . Y 9 HOH B 2 602 801 HOH HOH . Z 9 HOH C 1 801 801 HOH HOH . AA 9 HOH D 1 801 802 HOH HOH . AA 9 HOH D 2 802 801 HOH HOH . BA 9 HOH E 1 801 801 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ACH . . . W 7 167.316 123.104 185.316 1 0 ? N1 ACH 704 D 1 HETATM 2 C C2 ACH . . . W 7 168.707 123.684 185.134 1 2.62 ? C2 ACH 704 D 1 HETATM 3 C C3 ACH . . . W 7 169.484 124.012 186.391 1 6.61 ? C3 ACH 704 D 1 HETATM 4 O O4 ACH . . . W 7 169.759 122.826 187.182 1 4.48 ? O4 ACH 704 D 1 HETATM 5 C C5 ACH . . . W 7 170.592 122.982 188.213 1 0 ? C5 ACH 704 D 1 HETATM 6 O O7 ACH . . . W 7 171.104 124.028 188.475 1 7.96 ? O7 ACH 704 D 1 HETATM 7 C C6 ACH . . . W 7 170.793 121.707 188.954 1 0 ? C6 ACH 704 D 1 HETATM 8 C C8 ACH . . . W 7 166.747 122.835 183.96 1 8.46 ? C8 ACH 704 D 1 HETATM 9 C C9 ACH . . . W 7 167.371 121.819 186.076 1 0 ? C9 ACH 704 D 1 HETATM 10 C C10 ACH . . . W 7 166.408 124.05 186.035 1 2.74 ? C10 ACH 704 D 1 HETATM 11 H H21 ACH . . . W 7 168.59 124.498 184.603 1 9.37 ? H21 ACH 704 D 1 HETATM 12 H H22 ACH . . . W 7 169.202 123.027 184.603 1 9.99 ? H22 ACH 704 D 1 HETATM 13 H H31 ACH . . . W 7 170.323 124.464 186.166 1 9.99 ? H31 ACH 704 D 1 HETATM 14 H H32 ACH . . . W 7 168.955 124.622 186.942 1 12.75 ? H32 ACH 704 D 1 HETATM 15 H H61 ACH . . . W 7 170.457 121.807 189.868 1 7.13 ? H61 ACH 704 D 1 HETATM 16 H H62 ACH . . . W 7 171.747 121.492 188.991 1 6.78 ? H62 ACH 704 D 1 HETATM 17 H H63 ACH . . . W 7 170.294 120.988 188.516 1 7.56 ? H63 ACH 704 D 1 HETATM 18 H H81 ACH . . . W 7 166.808 123.656 183.43 1 8.99 ? H81 ACH 704 D 1 HETATM 19 H H82 ACH . . . W 7 165.812 122.565 184.066 1 10.72 ? H82 ACH 704 D 1 HETATM 20 H H83 ACH . . . W 7 167.254 122.111 183.539 1 10.85 ? H83 ACH 704 D 1 HETATM 21 H H91 ACH . . . W 7 167.433 122.026 187.03 1 9.15 ? H91 ACH 704 D 1 HETATM 22 H H92 ACH . . . W 7 168.158 121.316 185.783 1 7.27 ? H92 ACH 704 D 1 HETATM 23 H H93 ACH . . . W 7 166.554 121.313 185.887 1 7.42 ? H93 ACH 704 D 1 HETATM 24 H H101 ACH . . . W 7 166.025 124.672 185.383 1 11.39 ? H101 ACH 704 D 1 HETATM 25 H H102 ACH . . . W 7 166.912 124.553 186.703 1 13.08 ? H102 ACH 704 D 1 HETATM 26 H H103 ACH . . . W 7 165.706 123.526 186.471 1 9.04 ? H103 ACH 704 D 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 26 #