data_8STH # _model_server_result.job_id iP7yF5v5uiXdE03Sfv7djA _model_server_result.datetime_utc '2024-10-19 03:53:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8STH # _exptl.entry_id 8STH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 782.802 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(2E)-4-{5-carbamoyl-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-7-(3-hydroxypropoxy)-1H-benzimidazol-1-yl}but-2-en-1-yl]-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-7-methoxy-1H-benzimidazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8STH _cell.length_a 112.55 _cell.length_b 112.55 _cell.length_c 36.195 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8STH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 18.0975 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H42 N10 O9' _chem_comp.formula_weight 782.802 _chem_comp.id WWU _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(2E)-4-{5-carbamoyl-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-7-(3-hydroxypropoxy)-1H-benzimidazol-1-yl}but-2-en-1-yl]-2-[(4-ethyl-2-methyl-1,3-oxazole-5-carbonyl)amino]-7-methoxy-1H-benzimidazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 O2 WWU sing 376 n n C14 C13 WWU sing 377 n n C24 C25 WWU sing 378 n n C24 C23 WWU sing 379 n n C13 C12 WWU sing 380 n n C12 O1 WWU sing 381 n n C9 N2 WWU sing 382 n n C9 C8 WWU sing 383 n n C23 N6 WWU sing 384 n y C23 C22 WWU doub 385 n y O1 C11 WWU sing 386 n n N6 C26 WWU doub 387 n y N2 C10 WWU sing 388 n y N2 C20 WWU sing 389 n y N5 C20 WWU sing 390 n n N5 C21 WWU sing 391 n n C11 C10 WWU doub 392 n y C11 C15 WWU sing 393 n y C10 C19 WWU sing 394 n y C20 N4 WWU doub 395 n y C15 C16 WWU doub 396 n y C22 C21 WWU sing 397 n n C22 O4 WWU sing 398 n y C19 N4 WWU sing 399 n y C19 C18 WWU doub 400 n y C26 O4 WWU sing 401 n y C26 C27 WWU sing 402 n n C8 C7 WWU doub 403 e n C21 O5 WWU doub 404 n n C16 C18 WWU sing 405 n y C16 C17 WWU sing 406 n n O7 C29 WWU doub 407 n n O8 C WWU doub 408 n n C17 O3 WWU doub 409 n n C17 N3 WWU sing 410 n n C35 C34 WWU sing 411 n n O6 C34 WWU sing 412 n y O6 C30 WWU sing 413 n y C C1 WWU sing 414 n n C N WWU sing 415 n n C37 C1 WWU doub 416 n y C37 C36 WWU sing 417 n y C29 C30 WWU sing 418 n n C29 N7 WWU sing 419 n n N9 C36 WWU sing 420 n y N9 C28 WWU doub 421 n y C34 N8 WWU doub 422 n y C1 C2 WWU sing 423 n y C36 C5 WWU doub 424 n y C7 C6 WWU sing 425 n n C30 C31 WWU doub 426 n y C28 N7 WWU sing 427 n n C28 N1 WWU sing 428 n y C2 C3 WWU doub 429 n y C5 C3 WWU sing 430 n y C5 N1 WWU sing 431 n y C3 O WWU sing 432 n n N1 C6 WWU sing 433 n n N8 C31 WWU sing 434 n y C31 C32 WWU sing 435 n n C4 O WWU sing 436 n n C33 C32 WWU sing 437 n n C2 H1 WWU sing 438 n n C4 H2 WWU sing 439 n n C4 H3 WWU sing 440 n n C4 H4 WWU sing 441 n n C6 H5 WWU sing 442 n n C6 H6 WWU sing 443 n n C7 H7 WWU sing 444 n n C8 H8 WWU sing 445 n n C12 H9 WWU sing 446 n n C12 H10 WWU sing 447 n n C15 H11 WWU sing 448 n n C18 H12 WWU sing 449 n n C24 H13 WWU sing 450 n n C24 H14 WWU sing 451 n n C27 H15 WWU sing 452 n n C27 H16 WWU sing 453 n n C27 H17 WWU sing 454 n n C32 H18 WWU sing 455 n n C32 H19 WWU sing 456 n n C33 H20 WWU sing 457 n n C33 H21 WWU sing 458 n n C33 H22 WWU sing 459 n n C35 H23 WWU sing 460 n n C35 H24 WWU sing 461 n n C35 H25 WWU sing 462 n n C37 H26 WWU sing 463 n n N H27 WWU sing 464 n n N H28 WWU sing 465 n n N7 H29 WWU sing 466 n n C9 H30 WWU sing 467 n n C9 H31 WWU sing 468 n n N5 H32 WWU sing 469 n n C25 H33 WWU sing 470 n n C25 H34 WWU sing 471 n n C25 H35 WWU sing 472 n n N3 H36 WWU sing 473 n n N3 H37 WWU sing 474 n n C13 H38 WWU sing 475 n n C13 H39 WWU sing 476 n n C14 H40 WWU sing 477 n n C14 H41 WWU sing 478 n n O2 H42 WWU sing 479 n n # _atom_sites.entry_id 8STH _atom_sites.fract_transf_matrix[1][1] 0.008885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WWU A 1 401 1 WWU INX . C 3 HOH A 1 501 31 HOH HOH . C 3 HOH A 2 502 97 HOH HOH . C 3 HOH A 3 503 103 HOH HOH . C 3 HOH A 4 504 82 HOH HOH . C 3 HOH A 5 505 137 HOH HOH . C 3 HOH A 6 506 152 HOH HOH . C 3 HOH A 7 507 127 HOH HOH . C 3 HOH A 8 508 49 HOH HOH . C 3 HOH A 9 509 56 HOH HOH . C 3 HOH A 10 510 125 HOH HOH . C 3 HOH A 11 511 66 HOH HOH . C 3 HOH A 12 512 55 HOH HOH . C 3 HOH A 13 513 2 HOH HOH . C 3 HOH A 14 514 96 HOH HOH . C 3 HOH A 15 515 11 HOH HOH . C 3 HOH A 16 516 104 HOH HOH . C 3 HOH A 17 517 101 HOH HOH . C 3 HOH A 18 518 158 HOH HOH . C 3 HOH A 19 519 156 HOH HOH . C 3 HOH A 20 520 10 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 52 HOH HOH . C 3 HOH A 23 523 5 HOH HOH . C 3 HOH A 24 524 69 HOH HOH . C 3 HOH A 25 525 1 HOH HOH . C 3 HOH A 26 526 44 HOH HOH . C 3 HOH A 27 527 54 HOH HOH . C 3 HOH A 28 528 121 HOH HOH . C 3 HOH A 29 529 30 HOH HOH . C 3 HOH A 30 530 48 HOH HOH . C 3 HOH A 31 531 8 HOH HOH . C 3 HOH A 32 532 37 HOH HOH . C 3 HOH A 33 533 28 HOH HOH . C 3 HOH A 34 534 39 HOH HOH . C 3 HOH A 35 535 14 HOH HOH . C 3 HOH A 36 536 20 HOH HOH . C 3 HOH A 37 537 15 HOH HOH . C 3 HOH A 38 538 24 HOH HOH . C 3 HOH A 39 539 143 HOH HOH . C 3 HOH A 40 540 4 HOH HOH . C 3 HOH A 41 541 153 HOH HOH . C 3 HOH A 42 542 41 HOH HOH . C 3 HOH A 43 543 6 HOH HOH . C 3 HOH A 44 544 95 HOH HOH . C 3 HOH A 45 545 19 HOH HOH . C 3 HOH A 46 546 100 HOH HOH . C 3 HOH A 47 547 72 HOH HOH . C 3 HOH A 48 548 99 HOH HOH . C 3 HOH A 49 549 12 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 93 HOH HOH . C 3 HOH A 52 552 33 HOH HOH . C 3 HOH A 53 553 130 HOH HOH . C 3 HOH A 54 554 16 HOH HOH . C 3 HOH A 55 555 60 HOH HOH . C 3 HOH A 56 556 9 HOH HOH . C 3 HOH A 57 557 145 HOH HOH . C 3 HOH A 58 558 18 HOH HOH . C 3 HOH A 59 559 38 HOH HOH . C 3 HOH A 60 560 114 HOH HOH . C 3 HOH A 61 561 13 HOH HOH . C 3 HOH A 62 562 45 HOH HOH . C 3 HOH A 63 563 17 HOH HOH . C 3 HOH A 64 564 119 HOH HOH . C 3 HOH A 65 565 138 HOH HOH . C 3 HOH A 66 566 71 HOH HOH . C 3 HOH A 67 567 146 HOH HOH . C 3 HOH A 68 568 36 HOH HOH . C 3 HOH A 69 569 150 HOH HOH . C 3 HOH A 70 570 107 HOH HOH . C 3 HOH A 71 571 42 HOH HOH . C 3 HOH A 72 572 27 HOH HOH . C 3 HOH A 73 573 144 HOH HOH . C 3 HOH A 74 574 134 HOH HOH . C 3 HOH A 75 575 149 HOH HOH . C 3 HOH A 76 576 113 HOH HOH . C 3 HOH A 77 577 58 HOH HOH . C 3 HOH A 78 578 132 HOH HOH . C 3 HOH A 79 579 154 HOH HOH . C 3 HOH A 80 580 133 HOH HOH . C 3 HOH A 81 581 26 HOH HOH . C 3 HOH A 82 582 161 HOH HOH . C 3 HOH A 83 583 115 HOH HOH . C 3 HOH A 84 584 74 HOH HOH . C 3 HOH A 85 585 131 HOH HOH . C 3 HOH A 86 586 126 HOH HOH . C 3 HOH A 87 587 148 HOH HOH . C 3 HOH A 88 588 140 HOH HOH . C 3 HOH A 89 589 162 HOH HOH . C 3 HOH A 90 590 159 HOH HOH . C 3 HOH A 91 591 111 HOH HOH . C 3 HOH A 92 592 64 HOH HOH . C 3 HOH A 93 593 40 HOH HOH . C 3 HOH A 94 594 139 HOH HOH . C 3 HOH A 95 595 155 HOH HOH . C 3 HOH A 96 596 116 HOH HOH . C 3 HOH A 97 597 123 HOH HOH . C 3 HOH A 98 598 29 HOH HOH . C 3 HOH A 99 599 120 HOH HOH . C 3 HOH A 100 600 141 HOH HOH . C 3 HOH A 101 601 136 HOH HOH . C 3 HOH A 102 602 160 HOH HOH . C 3 HOH A 103 603 118 HOH HOH . C 3 HOH A 104 604 129 HOH HOH . C 3 HOH A 105 605 112 HOH HOH . C 3 HOH A 106 606 135 HOH HOH . C 3 HOH A 107 607 59 HOH HOH . C 3 HOH A 108 608 151 HOH HOH . C 3 HOH A 109 609 117 HOH HOH . C 3 HOH A 110 610 124 HOH HOH . C 3 HOH A 111 611 142 HOH HOH . C 3 HOH A 112 612 147 HOH HOH . C 3 HOH A 113 613 110 HOH HOH . C 3 HOH A 114 614 34 HOH HOH . C 3 HOH A 115 615 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WWU . . . B 2 11.946 -18.577 9.649 0.5 23.64 ? C1 WWU 401 A 1 HETATM 2 C C2 WWU . . . B 2 12.586 -17.441 10.14 0.5 21.79 ? C2 WWU 401 A 1 HETATM 3 C C3 WWU . . . B 2 13.93 -17.474 10.449 0.5 23.66 ? C3 WWU 401 A 1 HETATM 4 C C4 WWU . . . B 2 14.011 -15.125 10.865 0.5 21.95 ? C4 WWU 401 A 1 HETATM 5 C C5 WWU . . . B 2 14.656 -18.65 10.263 0.5 22.18 ? C5 WWU 401 A 1 HETATM 6 C C6 WWU . . . B 2 17.058 -18.177 10.933 0.5 22.64 ? C6 WWU 401 A 1 HETATM 7 C C7 WWU . . . B 2 17.717 -17.484 9.781 0.5 21.32 ? C7 WWU 401 A 1 HETATM 8 C C8 WWU . . . B 2 17.44 -17.739 8.497 0.5 23.2 ? C8 WWU 401 A 1 HETATM 9 C C11 WWU . . . B 2 17.421 -13.955 7.912 0.5 34.13 ? C11 WWU 401 A 1 HETATM 10 C C12 WWU . . . B 2 15.164 -13.973 7.068 0.5 39.29 ? C12 WWU 401 A 1 HETATM 11 C C15 WWU . . . B 2 17.402 -12.611 8.23 0.5 32.49 ? C15 WWU 401 A 1 HETATM 12 C C16 WWU . . . B 2 18.569 -11.973 8.647 0.5 33.36 ? C16 WWU 401 A 1 HETATM 13 C C17 WWU . . . B 2 18.514 -10.507 8.979 0.5 40.15 ? C17 WWU 401 A 1 HETATM 14 C C18 WWU . . . B 2 19.767 -12.679 8.744 0.5 29.65 ? C18 WWU 401 A 1 HETATM 15 C C19 WWU . . . B 2 19.783 -14.04 8.422 0.5 29.47 ? C19 WWU 401 A 1 HETATM 16 C C21 WWU . . . B 2 22.086 -17.675 8.585 0.5 23.23 ? C21 WWU 401 A 1 HETATM 17 C C23 WWU . . . B 2 22.163 -20.031 7.422 0.5 18.38 ? C23 WWU 401 A 1 HETATM 18 C C24 WWU . . . B 2 21.02 -20.175 6.46 0.5 21.67 ? C24 WWU 401 A 1 HETATM 19 C C27 WWU . . . B 2 25.063 -21.452 8.98 0.5 21.31 ? C27 WWU 401 A 1 HETATM 20 C C30 WWU . . . B 2 19.031 -22.552 9.836 0.5 15.91 ? C30 WWU 401 A 1 HETATM 21 C C31 WWU . . . B 2 20.031 -22.151 10.657 0.5 16.51 ? C31 WWU 401 A 1 HETATM 22 C C32 WWU . . . B 2 20.167 -21.006 11.618 0.5 19.64 ? C32 WWU 401 A 1 HETATM 23 C C33 WWU . . . B 2 20.575 -19.708 10.922 0.5 18.11 ? C33 WWU 401 A 1 HETATM 24 C C34 WWU . . . B 2 20.727 -23.88 9.638 0.5 19.66 ? C34 WWU 401 A 1 HETATM 25 C C35 WWU . . . B 2 21.467 -25.043 9.097 0.5 19.27 ? C35 WWU 401 A 1 HETATM 26 C C36 WWU . . . B 2 14.02 -19.792 9.752 0.5 21.74 ? C36 WWU 401 A 1 HETATM 27 C C37 WWU . . . B 2 12.655 -19.76 9.449 0.5 21.08 ? C37 WWU 401 A 1 HETATM 28 O O8 WWU . . . B 2 10.019 -17.5 8.806 0.5 24.53 ? O8 WWU 401 A 1 HETATM 29 C C WWU . . . B 2 10.475 -18.501 9.354 0.5 26.58 ? C WWU 401 A 1 HETATM 30 N N WWU . . . B 2 9.716 -19.52 9.727 0.5 23.86 ? N WWU 401 A 1 HETATM 31 O O WWU . . . B 2 14.628 -16.412 10.946 0.5 21.7 ? O WWU 401 A 1 HETATM 32 N N9 WWU . . . B 2 14.928 -20.846 9.638 0.5 20.62 ? N9 WWU 401 A 1 HETATM 33 C C28 WWU . . . B 2 16.067 -20.341 10.06 0.5 22.01 ? C28 WWU 401 A 1 HETATM 34 N N7 WWU . . . B 2 17.268 -20.968 10.162 0.5 19.83 ? N7 WWU 401 A 1 HETATM 35 C C29 WWU . . . B 2 17.672 -22.095 9.501 0.5 19.94 ? C29 WWU 401 A 1 HETATM 36 O O7 WWU . . . B 2 16.974 -22.67 8.665 0.5 21.65 ? O7 WWU 401 A 1 HETATM 37 O O6 WWU . . . B 2 19.459 -23.678 9.172 0.5 18.8 ? O6 WWU 401 A 1 HETATM 38 N N8 WWU . . . B 2 21.104 -23.016 10.517 0.5 16.6 ? N8 WWU 401 A 1 HETATM 39 N N1 WWU . . . B 2 15.974 -19.039 10.465 0.5 21.94 ? N1 WWU 401 A 1 HETATM 40 C C9 WWU . . . B 2 18.089 -17.068 7.329 0.5 27.26 ? C9 WWU 401 A 1 HETATM 41 N N2 WWU . . . B 2 18.982 -15.992 7.758 0.5 28.9 ? N2 WWU 401 A 1 HETATM 42 C C20 WWU . . . B 2 20.315 -16.081 8.045 0.5 28.26 ? C20 WWU 401 A 1 HETATM 43 N N5 WWU . . . B 2 20.966 -17.27 7.91 0.5 24.31 ? N5 WWU 401 A 1 HETATM 44 O O5 WWU . . . B 2 22.642 -16.984 9.438 0.5 24.88 ? O5 WWU 401 A 1 HETATM 45 C C22 WWU . . . B 2 22.558 -19.028 8.241 0.5 17.96 ? C22 WWU 401 A 1 HETATM 46 O O4 WWU . . . B 2 23.683 -19.452 8.911 0.5 20.95 ? O4 WWU 401 A 1 HETATM 47 C C26 WWU . . . B 2 23.895 -20.716 8.442 0.5 22.03 ? C26 WWU 401 A 1 HETATM 48 N N6 WWU . . . B 2 23.035 -21.098 7.561 0.5 18.42 ? N6 WWU 401 A 1 HETATM 49 C C25 WWU . . . B 2 19.717 -20.567 7.154 0.5 19.93 ? C25 WWU 401 A 1 HETATM 50 N N4 WWU . . . B 2 20.846 -14.946 8.447 0.5 27.64 ? N4 WWU 401 A 1 HETATM 51 C C10 WWU . . . B 2 18.608 -14.677 8.002 0.5 30.91 ? C10 WWU 401 A 1 HETATM 52 O O3 WWU . . . B 2 17.421 -9.949 9.069 0.5 37.21 ? O3 WWU 401 A 1 HETATM 53 N N3 WWU . . . B 2 19.664 -9.862 9.155 0.5 36.74 ? N3 WWU 401 A 1 HETATM 54 O O1 WWU . . . B 2 16.339 -14.676 7.492 0.5 37.87 ? O1 WWU 401 A 1 HETATM 55 C C13 WWU . . . B 2 14.066 -14.996 6.956 0.5 39.32 ? C13 WWU 401 A 1 HETATM 56 C C14 WWU . . . B 2 14.067 -15.702 5.634 0.5 42.45 ? C14 WWU 401 A 1 HETATM 57 O O2 WWU . . . B 2 13.593 -17.03 5.831 0.5 38.27 ? O2 WWU 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 57 #