data_8STM # _model_server_result.job_id 6c5CtwzsZWDi4PptaGdwKQ _model_server_result.datetime_utc '2025-08-31 20:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8stm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":202}' # _entry.id 8STM # _exptl.entry_id 8STM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8STM _cell.length_a 84.93 _cell.length_b 84.93 _cell.length_c 87.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8STM _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 E O2B GDP . A GDP 201 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc3 F MG MG . A MG 202 1_555 M O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc4 F MG MG . A MG 202 1_555 M O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 F MG MG . A MG 202 1_555 M O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 F MG MG . A MG 202 1_555 M O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc7 B OG SER 18 B SER 17 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc8 G O2B GDP . B GDP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 G O3B GDP . B GDP 201 1_555 H MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc10 H MG MG . B MG 202 1_555 N O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc11 H MG MG . B MG 202 1_555 N O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc12 H MG MG . B MG 202 1_555 N O HOH . B HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc13 H MG MG . B MG 202 1_555 N O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc14 C OG SER 18 C SER 17 1_555 J MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc15 I O2B GDP . C GDP 201 1_555 J MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc16 J MG MG . C MG 202 1_555 O O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc17 J MG MG . C MG 202 1_555 O O HOH . C HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc18 J MG MG . C MG 202 1_555 O O HOH . C HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc19 J MG MG . C MG 202 1_555 O O HOH . C HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc20 D OG SER 18 D SER 17 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc21 K O2B GDP . D GDP 201 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc22 L MG MG . D MG 202 1_555 P O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc23 L MG MG . D MG 202 1_555 P O HOH . D HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc24 L MG MG . D MG 202 1_555 P O HOH . D HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc25 L MG MG . D MG 202 1_555 P O HOH . D HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8STM _atom_sites.fract_transf_matrix[1][1] 0.011774 _atom_sites.fract_transf_matrix[1][2] 0.006798 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GDP A 1 201 3 GDP GDP . F 3 MG A 1 202 7 MG MG . G 2 GDP B 1 201 1 GDP GDP . H 3 MG B 1 202 5 MG MG . I 2 GDP C 1 201 4 GDP GDP . J 3 MG C 1 202 8 MG MG . K 2 GDP D 1 201 2 GDP GDP . L 3 MG D 1 202 6 MG MG . M 4 HOH A 1 301 143 HOH HOH . M 4 HOH A 2 302 206 HOH HOH . M 4 HOH A 3 303 51 HOH HOH . M 4 HOH A 4 304 29 HOH HOH . M 4 HOH A 5 305 89 HOH HOH . M 4 HOH A 6 306 203 HOH HOH . M 4 HOH A 7 307 102 HOH HOH . M 4 HOH A 8 308 4 HOH HOH . M 4 HOH A 9 309 28 HOH HOH . M 4 HOH A 10 310 60 HOH HOH . M 4 HOH A 11 311 148 HOH HOH . M 4 HOH A 12 312 133 HOH HOH . M 4 HOH A 13 313 23 HOH HOH . M 4 HOH A 14 314 136 HOH HOH . M 4 HOH A 15 315 177 HOH HOH . M 4 HOH A 16 316 21 HOH HOH . M 4 HOH A 17 317 8 HOH HOH . M 4 HOH A 18 318 153 HOH HOH . M 4 HOH A 19 319 201 HOH HOH . M 4 HOH A 20 320 57 HOH HOH . M 4 HOH A 21 321 129 HOH HOH . M 4 HOH A 22 322 163 HOH HOH . M 4 HOH A 23 323 138 HOH HOH . M 4 HOH A 24 324 105 HOH HOH . M 4 HOH A 25 325 155 HOH HOH . M 4 HOH A 26 326 83 HOH HOH . M 4 HOH A 27 327 22 HOH HOH . M 4 HOH A 28 328 109 HOH HOH . M 4 HOH A 29 329 66 HOH HOH . M 4 HOH A 30 330 24 HOH HOH . M 4 HOH A 31 331 187 HOH HOH . M 4 HOH A 32 332 6 HOH HOH . M 4 HOH A 33 333 202 HOH HOH . M 4 HOH A 34 334 154 HOH HOH . M 4 HOH A 35 335 90 HOH HOH . M 4 HOH A 36 336 124 HOH HOH . M 4 HOH A 37 337 184 HOH HOH . M 4 HOH A 38 338 93 HOH HOH . M 4 HOH A 39 339 117 HOH HOH . M 4 HOH A 40 340 204 HOH HOH . M 4 HOH A 41 341 72 HOH HOH . M 4 HOH A 42 342 178 HOH HOH . M 4 HOH A 43 343 32 HOH HOH . M 4 HOH A 44 344 55 HOH HOH . M 4 HOH A 45 345 160 HOH HOH . M 4 HOH A 46 346 38 HOH HOH . M 4 HOH A 47 347 196 HOH HOH . M 4 HOH A 48 348 48 HOH HOH . M 4 HOH A 49 349 144 HOH HOH . M 4 HOH A 50 350 44 HOH HOH . M 4 HOH A 51 351 193 HOH HOH . M 4 HOH A 52 352 174 HOH HOH . M 4 HOH A 53 353 185 HOH HOH . M 4 HOH A 54 354 186 HOH HOH . M 4 HOH A 55 355 200 HOH HOH . M 4 HOH A 56 356 173 HOH HOH . M 4 HOH A 57 357 165 HOH HOH . M 4 HOH A 58 358 13 HOH HOH . M 4 HOH A 59 359 147 HOH HOH . M 4 HOH A 60 360 164 HOH HOH . N 4 HOH B 1 301 49 HOH HOH . N 4 HOH B 2 302 2 HOH HOH . N 4 HOH B 3 303 33 HOH HOH . N 4 HOH B 4 304 189 HOH HOH . N 4 HOH B 5 305 46 HOH HOH . N 4 HOH B 6 306 64 HOH HOH . N 4 HOH B 7 307 59 HOH HOH . N 4 HOH B 8 308 41 HOH HOH . N 4 HOH B 9 309 47 HOH HOH . N 4 HOH B 10 310 17 HOH HOH . N 4 HOH B 11 311 3 HOH HOH . N 4 HOH B 12 312 132 HOH HOH . N 4 HOH B 13 313 62 HOH HOH . N 4 HOH B 14 314 80 HOH HOH . N 4 HOH B 15 315 26 HOH HOH . N 4 HOH B 16 316 35 HOH HOH . N 4 HOH B 17 317 20 HOH HOH . N 4 HOH B 18 318 180 HOH HOH . N 4 HOH B 19 319 42 HOH HOH . N 4 HOH B 20 320 50 HOH HOH . N 4 HOH B 21 321 5 HOH HOH . N 4 HOH B 22 322 119 HOH HOH . N 4 HOH B 23 323 131 HOH HOH . N 4 HOH B 24 324 140 HOH HOH . N 4 HOH B 25 325 99 HOH HOH . N 4 HOH B 26 326 128 HOH HOH . N 4 HOH B 27 327 30 HOH HOH . N 4 HOH B 28 328 106 HOH HOH . N 4 HOH B 29 329 188 HOH HOH . N 4 HOH B 30 330 179 HOH HOH . N 4 HOH B 31 331 162 HOH HOH . N 4 HOH B 32 332 43 HOH HOH . N 4 HOH B 33 333 146 HOH HOH . N 4 HOH B 34 334 103 HOH HOH . N 4 HOH B 35 335 91 HOH HOH . N 4 HOH B 36 336 96 HOH HOH . N 4 HOH B 37 337 75 HOH HOH . N 4 HOH B 38 338 56 HOH HOH . N 4 HOH B 39 339 156 HOH HOH . N 4 HOH B 40 340 54 HOH HOH . N 4 HOH B 41 341 110 HOH HOH . N 4 HOH B 42 342 25 HOH HOH . N 4 HOH B 43 343 76 HOH HOH . N 4 HOH B 44 344 122 HOH HOH . N 4 HOH B 45 345 39 HOH HOH . N 4 HOH B 46 346 84 HOH HOH . N 4 HOH B 47 347 170 HOH HOH . N 4 HOH B 48 348 190 HOH HOH . N 4 HOH B 49 349 192 HOH HOH . N 4 HOH B 50 350 169 HOH HOH . N 4 HOH B 51 351 191 HOH HOH . N 4 HOH B 52 352 197 HOH HOH . O 4 HOH C 1 301 175 HOH HOH . O 4 HOH C 2 302 183 HOH HOH . O 4 HOH C 3 303 182 HOH HOH . O 4 HOH C 4 304 181 HOH HOH . O 4 HOH C 5 305 166 HOH HOH . O 4 HOH C 6 306 68 HOH HOH . O 4 HOH C 7 307 7 HOH HOH . O 4 HOH C 8 308 78 HOH HOH . O 4 HOH C 9 309 45 HOH HOH . O 4 HOH C 10 310 108 HOH HOH . O 4 HOH C 11 311 123 HOH HOH . O 4 HOH C 12 312 52 HOH HOH . O 4 HOH C 13 313 67 HOH HOH . O 4 HOH C 14 314 115 HOH HOH . O 4 HOH C 15 315 34 HOH HOH . O 4 HOH C 16 316 94 HOH HOH . O 4 HOH C 17 317 120 HOH HOH . O 4 HOH C 18 318 10 HOH HOH . O 4 HOH C 19 319 92 HOH HOH . O 4 HOH C 20 320 74 HOH HOH . O 4 HOH C 21 321 18 HOH HOH . O 4 HOH C 22 322 176 HOH HOH . O 4 HOH C 23 323 127 HOH HOH . O 4 HOH C 24 324 195 HOH HOH . O 4 HOH C 25 325 95 HOH HOH . O 4 HOH C 26 326 77 HOH HOH . O 4 HOH C 27 327 87 HOH HOH . O 4 HOH C 28 328 37 HOH HOH . O 4 HOH C 29 329 116 HOH HOH . O 4 HOH C 30 330 205 HOH HOH . O 4 HOH C 31 331 152 HOH HOH . O 4 HOH C 32 332 139 HOH HOH . O 4 HOH C 33 333 151 HOH HOH . O 4 HOH C 34 334 73 HOH HOH . O 4 HOH C 35 335 135 HOH HOH . O 4 HOH C 36 336 101 HOH HOH . O 4 HOH C 37 337 126 HOH HOH . O 4 HOH C 38 338 167 HOH HOH . O 4 HOH C 39 339 168 HOH HOH . O 4 HOH C 40 340 19 HOH HOH . O 4 HOH C 41 341 71 HOH HOH . O 4 HOH C 42 342 194 HOH HOH . O 4 HOH C 43 343 207 HOH HOH . O 4 HOH C 44 344 172 HOH HOH . P 4 HOH D 1 301 149 HOH HOH . P 4 HOH D 2 302 88 HOH HOH . P 4 HOH D 3 303 70 HOH HOH . P 4 HOH D 4 304 112 HOH HOH . P 4 HOH D 5 305 79 HOH HOH . P 4 HOH D 6 306 150 HOH HOH . P 4 HOH D 7 307 27 HOH HOH . P 4 HOH D 8 308 15 HOH HOH . P 4 HOH D 9 309 100 HOH HOH . P 4 HOH D 10 310 130 HOH HOH . P 4 HOH D 11 311 118 HOH HOH . P 4 HOH D 12 312 16 HOH HOH . P 4 HOH D 13 313 104 HOH HOH . P 4 HOH D 14 314 58 HOH HOH . P 4 HOH D 15 315 161 HOH HOH . P 4 HOH D 16 316 9 HOH HOH . P 4 HOH D 17 317 142 HOH HOH . P 4 HOH D 18 318 63 HOH HOH . P 4 HOH D 19 319 31 HOH HOH . P 4 HOH D 20 320 36 HOH HOH . P 4 HOH D 21 321 40 HOH HOH . P 4 HOH D 22 322 53 HOH HOH . P 4 HOH D 23 323 111 HOH HOH . P 4 HOH D 24 324 61 HOH HOH . P 4 HOH D 25 325 1 HOH HOH . P 4 HOH D 26 326 141 HOH HOH . P 4 HOH D 27 327 69 HOH HOH . P 4 HOH D 28 328 86 HOH HOH . P 4 HOH D 29 329 137 HOH HOH . P 4 HOH D 30 330 11 HOH HOH . P 4 HOH D 31 331 81 HOH HOH . P 4 HOH D 32 332 199 HOH HOH . P 4 HOH D 33 333 14 HOH HOH . P 4 HOH D 34 334 107 HOH HOH . P 4 HOH D 35 335 113 HOH HOH . P 4 HOH D 36 336 65 HOH HOH . P 4 HOH D 37 337 145 HOH HOH . P 4 HOH D 38 338 97 HOH HOH . P 4 HOH D 39 339 12 HOH HOH . P 4 HOH D 40 340 98 HOH HOH . P 4 HOH D 41 341 121 HOH HOH . P 4 HOH D 42 342 125 HOH HOH . P 4 HOH D 43 343 82 HOH HOH . P 4 HOH D 44 344 134 HOH HOH . P 4 HOH D 45 345 85 HOH HOH . P 4 HOH D 46 346 158 HOH HOH . P 4 HOH D 47 347 157 HOH HOH . P 4 HOH D 48 348 114 HOH HOH . P 4 HOH D 49 349 198 HOH HOH . P 4 HOH D 50 350 171 HOH HOH . P 4 HOH D 51 351 159 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.95 _atom_site.Cartn_y 27.83 _atom_site.Cartn_z 33.253 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 412 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #