data_8STQ # _model_server_result.job_id GDLbzYwrMtzBJBdHOFRxaw _model_server_result.datetime_utc '2024-12-01 02:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8stq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8STQ # _exptl.entry_id 8STQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 399.399 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}naphthalene-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.71 _cell.angle_gamma 90 _cell.entry_id 8STQ _cell.length_a 161.285 _cell.length_b 73.845 _cell.length_c 107.256 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8STQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 445 A ASP 443 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc2 A OD1 ASP 445 A ASP 443 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc3 A OD1 ASP 500 A ASP 498 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc4 A OD2 ASP 500 A ASP 498 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C23 H17 N3 O4' _chem_comp.formula_weight 399.399 _chem_comp.id 3LQ _chem_comp.mon_nstd_flag . _chem_comp.name 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}naphthalene-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C00 3LQ doub 1 n y C01 C02 3LQ sing 2 n y C00 C05 3LQ sing 3 n y C02 C03 3LQ doub 4 n y O0Q C0K 3LQ doub 5 n n C0D O0B 3LQ sing 6 n n C0D C0E 3LQ sing 7 n n C05 O0B 3LQ sing 8 n n C05 C04 3LQ doub 9 n y C03 C04 3LQ sing 10 n y C04 O0A 3LQ sing 11 n n C0E N0H 3LQ sing 12 n n C0K N0H 3LQ sing 13 n n C0K N0M 3LQ sing 14 n n N0H C0P 3LQ sing 15 n n N0M C0N 3LQ sing 16 n n O0A CAH 3LQ sing 17 n n CAM CAH 3LQ doub 18 n y CAM CAL 3LQ sing 19 n y C0P C0O 3LQ doub 20 n n C0N O0S 3LQ doub 21 n n C0N C0O 3LQ sing 22 n n CAH CAI 3LQ sing 23 n y CAL CAK 3LQ doub 24 n y CAI CAY 3LQ doub 25 n y CAI CAJ 3LQ sing 26 n y CAY CAZ 3LQ sing 27 n y CAK CAJ 3LQ sing 28 n y CAJ CBB 3LQ doub 29 n y CAZ CBA 3LQ doub 30 n y CBB CBA 3LQ sing 31 n y CBA CBC 3LQ sing 32 n n CBC NBD 3LQ trip 33 n n C00 H1 3LQ sing 34 n n C01 H2 3LQ sing 35 n n C02 H3 3LQ sing 36 n n C03 H4 3LQ sing 37 n n C0D H5 3LQ sing 38 n n C0D H6 3LQ sing 39 n n C0E H7 3LQ sing 40 n n C0E H8 3LQ sing 41 n n N0M H9 3LQ sing 42 n n C0O H10 3LQ sing 43 n n C0P H11 3LQ sing 44 n n CAY H12 3LQ sing 45 n n CAZ H13 3LQ sing 46 n n CBB H14 3LQ sing 47 n n CAK H15 3LQ sing 48 n n CAL H16 3LQ sing 49 n n CAM H17 3LQ sing 50 n n # _atom_sites.entry_id 8STQ _atom_sites.fract_transf_matrix[1][1] 0.0062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3LQ A 1 601 178 3LQ 600 . D 4 MG A 1 602 1 MG MG . E 4 MG A 1 603 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C00 3LQ . . . C 3 358.821 -30.158 139.29 1 60.39 ? C00 3LQ 601 A 1 HETATM 2 C C01 3LQ . . . C 3 359.81 -29.555 140.094 1 71.95 ? C01 3LQ 601 A 1 HETATM 3 C C02 3LQ . . . C 3 359.606 -29.394 141.484 1 74.28 ? C02 3LQ 601 A 1 HETATM 4 C C03 3LQ . . . C 3 358.404 -29.839 142.078 1 69.98 ? C03 3LQ 601 A 1 HETATM 5 C C04 3LQ . . . C 3 357.399 -30.445 141.283 1 65.13 ? C04 3LQ 601 A 1 HETATM 6 C C05 3LQ . . . C 3 357.602 -30.613 139.885 1 65.97 ? C05 3LQ 601 A 1 HETATM 7 O O0A 3LQ . . . C 3 356.221 -30.9 141.834 1 70.06 ? O0A 3LQ 601 A 1 HETATM 8 O O0B 3LQ . . . C 3 356.576 -31.214 139.184 1 72.02 ? O0B 3LQ 601 A 1 HETATM 9 C C0D 3LQ . . . C 3 356.606 -31.264 137.762 1 74.69 ? C0D 3LQ 601 A 1 HETATM 10 C C0E 3LQ . . . C 3 355.391 -32.063 137.261 1 78.72 ? C0E 3LQ 601 A 1 HETATM 11 N N0H 3LQ . . . C 3 355.305 -33.376 137.925 1 81.09 ? N0H 3LQ 601 A 1 HETATM 12 C C0K 3LQ . . . C 3 356.039 -34.463 137.509 1 82.94 ? C0K 3LQ 601 A 1 HETATM 13 N N0M 3LQ . . . C 3 355.858 -35.612 138.214 1 79.67 ? N0M 3LQ 601 A 1 HETATM 14 C C0N 3LQ . . . C 3 355.04 -35.811 139.28 1 79.46 ? C0N 3LQ 601 A 1 HETATM 15 C C0O 3LQ . . . C 3 354.272 -34.632 139.699 1 87.56 ? C0O 3LQ 601 A 1 HETATM 16 C C0P 3LQ . . . C 3 354.416 -33.46 139.027 1 77.22 ? C0P 3LQ 601 A 1 HETATM 17 O O0Q 3LQ . . . C 3 356.819 -34.422 136.556 1 78.9 ? O0Q 3LQ 601 A 1 HETATM 18 O O0S 3LQ . . . C 3 354.963 -36.901 139.837 1 74.26 ? O0S 3LQ 601 A 1 HETATM 19 C CAH 3LQ . . . C 3 355.245 -30.113 142.427 1 73.33 ? CAH 3LQ 601 A 1 HETATM 20 C CAI 3LQ . . . C 3 354.415 -30.663 143.443 1 70.99 ? CAI 3LQ 601 A 1 HETATM 21 C CAY 3LQ . . . C 3 354.585 -32.011 143.868 1 74.84 ? CAY 3LQ 601 A 1 HETATM 22 C CAZ 3LQ . . . C 3 353.751 -32.549 144.887 1 76.59 ? CAZ 3LQ 601 A 1 HETATM 23 C CBA 3LQ . . . C 3 352.742 -31.749 145.487 1 77.94 ? CBA 3LQ 601 A 1 HETATM 24 C CBC 3LQ . . . C 3 351.925 -32.329 146.541 1 72.94 ? CBC 3LQ 601 A 1 HETATM 25 N NBD 3LQ . . . C 3 351.281 -32.757 147.394 1 73.37 ? NBD 3LQ 601 A 1 HETATM 26 C CBB 3LQ . . . C 3 352.578 -30.405 145.067 1 80.97 ? CBB 3LQ 601 A 1 HETATM 27 C CAJ 3LQ . . . C 3 353.4 -29.863 144.052 1 77.1 ? CAJ 3LQ 601 A 1 HETATM 28 C CAK 3LQ . . . C 3 353.214 -28.524 143.645 1 78.42 ? CAK 3LQ 601 A 1 HETATM 29 C CAL 3LQ . . . C 3 354.039 -27.976 142.629 1 71.33 ? CAL 3LQ 601 A 1 HETATM 30 C CAM 3LQ . . . C 3 355.047 -28.764 142.023 1 77.93 ? CAM 3LQ 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #