data_8STS
#
_model_server_result.job_id            mG1-8pMvyEbQYBAS5Jt6jg 
_model_server_result.datetime_utc      '2024-11-28 05:54:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sts 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    8STS 
#
_exptl.entry_id    8STS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              435.38 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-7-fluoronaphthalene-2-carbonitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.32 
_cell.angle_gamma         90 
_cell.entry_id            8STS 
_cell.length_a            89.86 
_cell.length_b            128.26 
_cell.length_c            133.042 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8STS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,I,K 1 1 
B,C,G,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 445 C ASP 443 1_555 F MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc2 A OD1 ASP 551 C ASP 549 1_555 F MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc3 B OD2 ASP 445 A ASP 443 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc4 B OD2 ASP 551 A ASP 549 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
#
_chem_comp.formula           'C23 H15 F2 N3 O4' 
_chem_comp.formula_weight    435.38 
_chem_comp.id                7N1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-7-fluoronaphthalene-2-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F02 C01 7N1 sing 1 n n 
C01 C00 7N1 doub 2 n y 
C01 C02 7N1 sing 3 n y 
C00 C05 7N1 sing 4 n y 
C02 C03 7N1 doub 5 n y 
C05 O0B 7N1 sing 6 n n 
C05 C04 7N1 doub 7 n y 
C03 C04 7N1 sing 8 n y 
C0D O0B 7N1 sing 9 n n 
C0D C0E 7N1 sing 10 n n 
O0Q C0K 7N1 doub 11 n n 
C04 O0A 7N1 sing 12 n n 
C0E N0H 7N1 sing 13 n n 
C0K N0H 7N1 sing 14 n n 
C0K N0M 7N1 sing 15 n n 
N0H C0P 7N1 sing 16 n n 
N0M C0N 7N1 sing 17 n n 
O0A CAH 7N1 sing 18 n n 
CAM CAH 7N1 doub 19 n y 
CAM CAL 7N1 sing 20 n y 
CAH CAI 7N1 sing 21 n y 
C0P C0O 7N1 doub 22 n n 
C0N O0S 7N1 doub 23 n n 
C0N C0O 7N1 sing 24 n n 
F01 CAL 7N1 sing 25 n n 
CAL CAK 7N1 doub 26 n y 
CAI CAY 7N1 doub 27 n y 
CAI CAJ 7N1 sing 28 n y 
CAY CAZ 7N1 sing 29 n y 
CAK CAJ 7N1 sing 30 n y 
CAJ CBB 7N1 doub 31 n y 
CAZ CBA 7N1 doub 32 n y 
CBB CBA 7N1 sing 33 n y 
CBA CBC 7N1 sing 34 n n 
CBC NBD 7N1 trip 35 n n 
CAK H1 7N1 sing 36 n n 
CAM H2 7N1 sing 37 n n 
CAY H3 7N1 sing 38 n n 
CAZ H4 7N1 sing 39 n n 
CBB H5 7N1 sing 40 n n 
C0P H6 7N1 sing 41 n n 
C00 H7 7N1 sing 42 n n 
C0D H8 7N1 sing 43 n n 
C0D H9 7N1 sing 44 n n 
C0E H10 7N1 sing 45 n n 
C0E H11 7N1 sing 46 n n 
C0O H12 7N1 sing 47 n n 
N0M H13 7N1 sing 48 n n 
C02 H14 7N1 sing 49 n n 
C03 H15 7N1 sing 50 n n 
#
_atom_sites.entry_id                     8STS 
_atom_sites.fract_transf_matrix[1][1]    0.011128 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003049 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007797 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 7N1 C 1 601 2 7N1 636 . 
F 4 MG C 1 602 2 MG MG . 
G 3 7N1 A 1 601 1 7N1 636 . 
H 4 MG A 1 602 1 MG MG . 
I 5 HOH C 1 701 2 HOH HOH . 
I 5 HOH C 2 702 9 HOH HOH . 
I 5 HOH C 3 703 4 HOH HOH . 
I 5 HOH C 4 704 6 HOH HOH . 
J 5 HOH A 1 701 1 HOH HOH . 
J 5 HOH A 2 702 5 HOH HOH . 
K 5 HOH D 1 501 13 HOH HOH . 
K 5 HOH D 2 502 7 HOH HOH . 
K 5 HOH D 3 503 3 HOH HOH . 
K 5 HOH D 4 504 14 HOH HOH . 
K 5 HOH D 5 505 8 HOH HOH . 
K 5 HOH D 6 506 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAH 7N1 . . . E 3 10.504 107.723 -20.957 1 98.5 ? CAH 7N1 601 C 1 
HETATM 2 C CAI 7N1 . . . E 3 9.687 108.792 -21.33 1 98.92 ? CAI 7N1 601 C 1 
HETATM 3 C CAJ 7N1 . . . E 3 8.352 108.587 -21.665 1 94.4 ? CAJ 7N1 601 C 1 
HETATM 4 C CAK 7N1 . . . E 3 7.824 107.3 -21.629 1 91.33 ? CAK 7N1 601 C 1 
HETATM 5 C CAL 7N1 . . . E 3 8.632 106.235 -21.261 1 104.86 ? CAL 7N1 601 C 1 
HETATM 6 C CAM 7N1 . . . E 3 9.966 106.444 -20.928 1 101.24 ? CAM 7N1 601 C 1 
HETATM 7 C CAY 7N1 . . . E 3 10.219 110.077 -21.365 1 93.5 ? CAY 7N1 601 C 1 
HETATM 8 C CAZ 7N1 . . . E 3 9.416 111.153 -21.732 1 88.28 ? CAZ 7N1 601 C 1 
HETATM 9 C CBA 7N1 . . . E 3 8.087 110.945 -22.066 1 95.01 ? CBA 7N1 601 C 1 
HETATM 10 C CBB 7N1 . . . E 3 7.553 109.663 -22.033 1 103.74 ? CBB 7N1 601 C 1 
HETATM 11 C CBC 7N1 . . . E 3 7.216 112.133 -22.469 1 114.54 ? CBC 7N1 601 C 1 
HETATM 12 N NBD 7N1 . . . E 3 6.564 113.008 -22.768 1 124.26 ? NBD 7N1 601 C 1 
HETATM 13 C C0P 7N1 . . . E 3 11.205 110.229 -16.708 1 98.6 ? C0P 7N1 601 C 1 
HETATM 14 C C00 7N1 . . . E 3 13.253 105.501 -18.273 1 90.73 ? C00 7N1 601 C 1 
HETATM 15 C C0D 7N1 . . . E 3 11.782 107.062 -16.543 1 107.14 ? C0D 7N1 601 C 1 
HETATM 16 C C0E 7N1 . . . E 3 10.893 108.046 -15.756 1 112.05 ? C0E 7N1 601 C 1 
HETATM 17 C C0K 7N1 . . . E 3 12.462 109.678 -14.838 1 121.62 ? C0K 7N1 601 C 1 
HETATM 18 C C0N 7N1 . . . E 3 12.721 111.772 -15.801 1 114.51 ? C0N 7N1 601 C 1 
HETATM 19 C C0O 7N1 . . . E 3 11.794 111.448 -16.734 1 96.78 ? C0O 7N1 601 C 1 
HETATM 20 N N0H 7N1 . . . E 3 11.532 109.355 -15.771 1 112.74 ? N0H 7N1 601 C 1 
HETATM 21 N N0M 7N1 . . . E 3 13.049 110.897 -14.864 1 110.76 ? N0M 7N1 601 C 1 
HETATM 22 O O0A 7N1 . . . E 3 11.853 107.99 -20.632 1 98 ? O0A 7N1 601 C 1 
HETATM 23 O O0B 7N1 . . . E 3 11.9 107.503 -17.882 1 109.3 ? O0B 7N1 601 C 1 
HETATM 24 O O0Q 7N1 . . . E 3 12.761 108.9 -13.997 1 133.84 ? O0Q 7N1 601 C 1 
HETATM 25 O O0S 7N1 . . . E 3 13.235 112.839 -15.825 1 124.94 ? O0S 7N1 601 C 1 
HETATM 26 C C01 7N1 . . . E 3 13.905 104.641 -19.149 1 88.89 ? C01 7N1 601 C 1 
HETATM 27 C C02 7N1 . . . E 3 13.877 104.892 -20.518 1 89.66 ? C02 7N1 601 C 1 
HETATM 28 C C03 7N1 . . . E 3 13.197 106.004 -21.008 1 94.47 ? C03 7N1 601 C 1 
HETATM 29 C C04 7N1 . . . E 3 12.541 106.866 -20.134 1 92.33 ? C04 7N1 601 C 1 
HETATM 30 C C05 7N1 . . . E 3 12.571 106.616 -18.761 1 97.23 ? C05 7N1 601 C 1 
HETATM 31 F F01 7N1 . . . E 3 8.107 104.973 -21.228 1 103.72 ? F01 7N1 601 C 1 
HETATM 32 F F02 7N1 . . . E 3 14.571 103.549 -18.664 1 99.65 ? F02 7N1 601 C 1 
HETATM 33 H H1 7N1 . . . E 3 6.782 107.131 -21.889 1 109.64 ? H1 7N1 601 C 1 
HETATM 34 H H2 7N1 . . . E 3 10.589 105.602 -20.644 1 121.53 ? H2 7N1 601 C 1 
HETATM 35 H H3 7N1 . . . E 3 11.263 110.24 -21.105 1 112.24 ? H3 7N1 601 C 1 
HETATM 36 H H4 7N1 . . . E 3 9.833 112.16 -21.757 1 105.98 ? H4 7N1 601 C 1 
HETATM 37 H H5 7N1 . . . E 3 6.501 109.499 -22.296 1 124.53 ? H5 7N1 601 C 1 
HETATM 38 H H6 7N1 . . . E 3 10.465 109.969 -17.454 1 118.36 ? H6 7N1 601 C 1 
HETATM 39 H H7 7N1 . . . E 3 13.275 105.304 -17.205 1 108.91 ? H7 7N1 601 C 1 
HETATM 40 H H8 7N1 . . . E 3 12.765 107.02 -16.089 1 128.62 ? H8 7N1 601 C 1 
HETATM 41 H H9 7N1 . . . E 3 11.333 106.076 -16.525 1 128.62 ? H9 7N1 601 C 1 
HETATM 42 H H10 7N1 . . . E 3 10.784 107.704 -14.733 1 134.5 ? H10 7N1 601 C 1 
HETATM 43 H H11 7N1 . . . E 3 9.916 108.11 -16.221 1 134.5 ? H11 7N1 601 C 1 
HETATM 44 H H12 7N1 . . . E 3 11.525 112.162 -17.498 1 116.18 ? H12 7N1 601 C 1 
HETATM 45 H H13 7N1 . . . E 3 13.736 111.137 -14.173 1 132.96 ? H13 7N1 601 C 1 
HETATM 46 H H14 7N1 . . . E 3 14.386 104.221 -21.204 1 107.64 ? H14 7N1 601 C 1 
HETATM 47 H H15 7N1 . . . E 3 13.179 106.201 -22.082 1 113.41 ? H15 7N1 601 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           47 
#