data_8STS # _model_server_result.job_id MLgGueTdZ50JCfe-paa6bQ _model_server_result.datetime_utc '2024-11-28 05:50:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 8STS # _exptl.entry_id 8STS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 435.38 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-7-fluoronaphthalene-2-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.32 _cell.angle_gamma 90 _cell.entry_id 8STS _cell.length_a 89.86 _cell.length_b 128.26 _cell.length_c 133.042 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8STS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,I,K 1 1 B,C,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 445 C ASP 443 1_555 F MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc2 A OD1 ASP 551 C ASP 549 1_555 F MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc3 B OD2 ASP 445 A ASP 443 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc4 B OD2 ASP 551 A ASP 549 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'C23 H15 F2 N3 O4' _chem_comp.formula_weight 435.38 _chem_comp.id 7N1 _chem_comp.mon_nstd_flag . _chem_comp.name 5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-7-fluoronaphthalene-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F02 C01 7N1 sing 1 n n C01 C00 7N1 doub 2 n y C01 C02 7N1 sing 3 n y C00 C05 7N1 sing 4 n y C02 C03 7N1 doub 5 n y C05 O0B 7N1 sing 6 n n C05 C04 7N1 doub 7 n y C03 C04 7N1 sing 8 n y C0D O0B 7N1 sing 9 n n C0D C0E 7N1 sing 10 n n O0Q C0K 7N1 doub 11 n n C04 O0A 7N1 sing 12 n n C0E N0H 7N1 sing 13 n n C0K N0H 7N1 sing 14 n n C0K N0M 7N1 sing 15 n n N0H C0P 7N1 sing 16 n n N0M C0N 7N1 sing 17 n n O0A CAH 7N1 sing 18 n n CAM CAH 7N1 doub 19 n y CAM CAL 7N1 sing 20 n y CAH CAI 7N1 sing 21 n y C0P C0O 7N1 doub 22 n n C0N O0S 7N1 doub 23 n n C0N C0O 7N1 sing 24 n n F01 CAL 7N1 sing 25 n n CAL CAK 7N1 doub 26 n y CAI CAY 7N1 doub 27 n y CAI CAJ 7N1 sing 28 n y CAY CAZ 7N1 sing 29 n y CAK CAJ 7N1 sing 30 n y CAJ CBB 7N1 doub 31 n y CAZ CBA 7N1 doub 32 n y CBB CBA 7N1 sing 33 n y CBA CBC 7N1 sing 34 n n CBC NBD 7N1 trip 35 n n CAK H1 7N1 sing 36 n n CAM H2 7N1 sing 37 n n CAY H3 7N1 sing 38 n n CAZ H4 7N1 sing 39 n n CBB H5 7N1 sing 40 n n C0P H6 7N1 sing 41 n n C00 H7 7N1 sing 42 n n C0D H8 7N1 sing 43 n n C0D H9 7N1 sing 44 n n C0E H10 7N1 sing 45 n n C0E H11 7N1 sing 46 n n C0O H12 7N1 sing 47 n n N0M H13 7N1 sing 48 n n C02 H14 7N1 sing 49 n n C03 H15 7N1 sing 50 n n # _atom_sites.entry_id 8STS _atom_sites.fract_transf_matrix[1][1] 0.011128 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003049 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 7N1 C 1 601 2 7N1 636 . F 4 MG C 1 602 2 MG MG . G 3 7N1 A 1 601 1 7N1 636 . H 4 MG A 1 602 1 MG MG . I 5 HOH C 1 701 2 HOH HOH . I 5 HOH C 2 702 9 HOH HOH . I 5 HOH C 3 703 4 HOH HOH . I 5 HOH C 4 704 6 HOH HOH . J 5 HOH A 1 701 1 HOH HOH . J 5 HOH A 2 702 5 HOH HOH . K 5 HOH D 1 501 13 HOH HOH . K 5 HOH D 2 502 7 HOH HOH . K 5 HOH D 3 503 3 HOH HOH . K 5 HOH D 4 504 14 HOH HOH . K 5 HOH D 5 505 8 HOH HOH . K 5 HOH D 6 506 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH 7N1 . . . G 3 -8.414 46.237 -67.003 1 113.14 ? CAH 7N1 601 A 1 HETATM 2 C CAI 7N1 . . . G 3 -9.474 45.825 -67.813 1 113.95 ? CAI 7N1 601 A 1 HETATM 3 C CAJ 7N1 . . . G 3 -10.007 44.547 -67.679 1 123.62 ? CAJ 7N1 601 A 1 HETATM 4 C CAK 7N1 . . . G 3 -9.48 43.675 -66.73 1 120.52 ? CAK 7N1 601 A 1 HETATM 5 C CAL 7N1 . . . G 3 -8.428 44.085 -65.924 1 124.29 ? CAL 7N1 601 A 1 HETATM 6 C CAM 7N1 . . . G 3 -7.899 45.361 -66.06 1 122.49 ? CAM 7N1 601 A 1 HETATM 7 C CAY 7N1 . . . G 3 -9.997 46.701 -68.759 1 119.65 ? CAY 7N1 601 A 1 HETATM 8 C CAZ 7N1 . . . G 3 -11.053 46.295 -69.571 1 128.74 ? CAZ 7N1 601 A 1 HETATM 9 C CBA 7N1 . . . G 3 -11.582 45.02 -69.436 1 133.69 ? CBA 7N1 601 A 1 HETATM 10 C CBB 7N1 . . . G 3 -11.061 44.145 -68.491 1 131.99 ? CBB 7N1 601 A 1 HETATM 11 C CBC 7N1 . . . G 3 -12.739 44.585 -70.332 1 133.28 ? CBC 7N1 601 A 1 HETATM 12 N NBD 7N1 . . . G 3 -13.597 44.273 -71.002 1 142.57 ? NBD 7N1 601 A 1 HETATM 13 C C0P 7N1 . . . G 3 -9.857 50.531 -64.836 1 130.14 ? C0P 7N1 601 A 1 HETATM 14 C C00 7N1 . . . G 3 -4.902 48.275 -65.115 1 119.24 ? C00 7N1 601 A 1 HETATM 15 C C0D 7N1 . . . G 3 -6.879 49.637 -63.729 1 124.74 ? C0D 7N1 601 A 1 HETATM 16 C C0E 7N1 . . . G 3 -8.133 50.337 -63.17 1 127.74 ? C0E 7N1 601 A 1 HETATM 17 C C0K 7N1 . . . G 3 -8.285 52.231 -64.696 1 122.09 ? C0K 7N1 601 A 1 HETATM 18 C C0N 7N1 . . . G 3 -9.967 52.374 -66.286 1 128.94 ? C0N 7N1 601 A 1 HETATM 19 C C0O 7N1 . . . G 3 -10.463 51.19 -65.854 1 130.9 ? C0O 7N1 601 A 1 HETATM 20 N N0H 7N1 . . . G 3 -8.783 51.047 -64.262 1 126.85 ? N0H 7N1 601 A 1 HETATM 21 N N0M 7N1 . . . G 3 -8.89 52.887 -65.713 1 122.77 ? N0M 7N1 601 A 1 HETATM 22 O O0A 7N1 . . . G 3 -7.894 47.537 -67.158 1 119.14 ? O0A 7N1 601 A 1 HETATM 23 O O0B 7N1 . . . G 3 -7.277 48.732 -64.74 1 141.16 ? O0B 7N1 601 A 1 HETATM 24 O O0Q 7N1 . . . G 3 -7.322 52.692 -64.185 1 111.17 ? O0Q 7N1 601 A 1 HETATM 25 O O0S 7N1 . . . G 3 -10.498 52.948 -67.176 1 129.38 ? O0S 7N1 601 A 1 HETATM 26 C C01 7N1 . . . G 3 -3.893 47.748 -65.912 1 126.59 ? C01 7N1 601 A 1 HETATM 27 C C02 7N1 . . . G 3 -4.21 47.148 -67.129 1 133.83 ? C02 7N1 601 A 1 HETATM 28 C C03 7N1 . . . G 3 -5.535 47.075 -67.548 1 130.02 ? C03 7N1 601 A 1 HETATM 29 C C04 7N1 . . . G 3 -6.547 47.604 -66.753 1 121.62 ? C04 7N1 601 A 1 HETATM 30 C C05 7N1 . . . G 3 -6.231 48.204 -65.534 1 130.05 ? C05 7N1 601 A 1 HETATM 31 F F01 7N1 . . . G 3 -7.911 43.23 -64.993 1 134.96 ? F01 7N1 601 A 1 HETATM 32 F F02 7N1 . . . G 3 -2.589 47.819 -65.501 1 117.45 ? F02 7N1 601 A 1 HETATM 33 H H1 7N1 . . . G 3 -9.893 42.675 -66.62 1 144.67 ? H1 7N1 601 A 1 HETATM 34 H H2 7N1 . . . G 3 -7.078 45.675 -65.424 1 147.03 ? H2 7N1 601 A 1 HETATM 35 H H3 7N1 . . . G 3 -9.581 47.701 -68.865 1 143.62 ? H3 7N1 601 A 1 HETATM 36 H H4 7N1 . . . G 3 -11.464 46.979 -70.314 1 154.53 ? H4 7N1 601 A 1 HETATM 37 H H5 7N1 . . . G 3 -11.481 43.137 -68.385 1 158.43 ? H5 7N1 601 A 1 HETATM 38 H H6 7N1 . . . G 3 -10.252 49.584 -64.493 1 156.21 ? H6 7N1 601 A 1 HETATM 39 H H7 7N1 . . . G 3 -4.656 48.742 -64.165 1 143.13 ? H7 7N1 601 A 1 HETATM 40 H H8 7N1 . . . G 3 -6.204 50.376 -64.146 1 149.73 ? H8 7N1 601 A 1 HETATM 41 H H9 7N1 . . . G 3 -6.377 49.097 -62.934 1 149.73 ? H9 7N1 601 A 1 HETATM 42 H H10 7N1 . . . G 3 -7.847 51.039 -62.395 1 153.33 ? H10 7N1 601 A 1 HETATM 43 H H11 7N1 . . . G 3 -8.812 49.6 -62.756 1 153.33 ? H11 7N1 601 A 1 HETATM 44 H H12 7N1 . . . G 3 -11.342 50.77 -66.321 1 157.13 ? H12 7N1 601 A 1 HETATM 45 H H13 7N1 . . . G 3 -8.522 53.765 -66.033 1 147.37 ? H13 7N1 601 A 1 HETATM 46 H H14 7N1 . . . G 3 -3.421 46.735 -67.751 1 160.64 ? H14 7N1 601 A 1 HETATM 47 H H15 7N1 . . . G 3 -5.781 46.604 -68.502 1 156.07 ? H15 7N1 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 47 #