data_8STT # _model_server_result.job_id QjVxviJZSWLXE12rJNTvKg _model_server_result.datetime_utc '2025-01-11 00:45:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8stt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 8STT # _exptl.entry_id 8STT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.376 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}indolizine-2-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.6 _cell.angle_gamma 90 _cell.entry_id 8STT _cell.length_a 111.695 _cell.length_b 73.006 _cell.length_c 170.474 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8STT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 445 A ASP 443 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc2 A OD2 ASP 551 A ASP 549 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc3 C OD1 ASP 445 C ASP 443 1_555 G MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc4 C OD2 ASP 551 C ASP 549 1_555 G MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? # _chem_comp.formula 'C21 H16 N4 O4' _chem_comp.formula_weight 388.376 _chem_comp.id 29T _chem_comp.mon_nstd_flag . _chem_comp.name 8-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}indolizine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C00 29T doub 1 n y C01 C02 29T sing 2 n y C00 C05 29T sing 3 n y C02 C03 29T doub 4 n y O0Q C0K 29T doub 5 n n C0D O0B 29T sing 6 n n C0D C0E 29T sing 7 n n C05 O0B 29T sing 8 n n C05 C04 29T doub 9 n y C03 C04 29T sing 10 n y C0K N0M 29T sing 11 n n C0K N0H 29T sing 12 n n C0E N0H 29T sing 13 n n C04 O0A 29T sing 14 n n N0M C0N 29T sing 15 n n N0H C0P 29T sing 16 n n O0A C0C 29T sing 17 n n C0N O0S 29T doub 18 n n C0N C0O 29T sing 19 n n C0P C0O 29T doub 20 n n C0Z C0C 29T doub 21 n y C0Z C0Y 29T sing 22 n y C0C C0V 29T sing 23 n y C0Y C0X 29T doub 24 n y C0V N0W 29T sing 25 n y C0V C10 29T doub 26 n y C0X N0W 29T sing 27 n y N0W C11 29T sing 28 n y C10 C14 29T sing 29 n y C11 C14 29T doub 30 n y C14 C16 29T sing 31 n n C16 N19 29T trip 32 n n C10 H1 29T sing 33 n n C11 H2 29T sing 34 n n C00 H3 29T sing 35 n n C01 H4 29T sing 36 n n C02 H5 29T sing 37 n n C03 H6 29T sing 38 n n C0X H7 29T sing 39 n n C0Y H8 29T sing 40 n n C0Z H9 29T sing 41 n n C0D H10 29T sing 42 n n C0D H11 29T sing 43 n n C0E H12 29T sing 44 n n C0E H13 29T sing 45 n n N0M H14 29T sing 46 n n C0O H15 29T sing 47 n n C0P H16 29T sing 48 n n # _atom_sites.entry_id 8STT _atom_sites.fract_transf_matrix[1][1] 0.008953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001195 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 601 1 MG MG . F 4 29T A 1 602 1 29T 29T . G 3 MG C 1 601 2 MG MG . H 4 29T C 1 602 2 29T 29T . I 5 HOH A 1 701 44 HOH HOH . I 5 HOH A 2 702 31 HOH HOH . I 5 HOH A 3 703 30 HOH HOH . I 5 HOH A 4 704 54 HOH HOH . I 5 HOH A 5 705 59 HOH HOH . I 5 HOH A 6 706 38 HOH HOH . I 5 HOH A 7 707 60 HOH HOH . I 5 HOH A 8 708 61 HOH HOH . I 5 HOH A 9 709 13 HOH HOH . I 5 HOH A 10 710 52 HOH HOH . I 5 HOH A 11 711 62 HOH HOH . I 5 HOH A 12 712 56 HOH HOH . I 5 HOH A 13 713 1 HOH HOH . I 5 HOH A 14 714 40 HOH HOH . I 5 HOH A 15 715 23 HOH HOH . I 5 HOH A 16 716 18 HOH HOH . I 5 HOH A 17 717 51 HOH HOH . I 5 HOH A 18 718 14 HOH HOH . I 5 HOH A 19 719 26 HOH HOH . I 5 HOH A 20 720 57 HOH HOH . I 5 HOH A 21 721 53 HOH HOH . I 5 HOH A 22 722 7 HOH HOH . I 5 HOH A 23 723 27 HOH HOH . I 5 HOH A 24 724 34 HOH HOH . I 5 HOH A 25 725 33 HOH HOH . I 5 HOH A 26 726 55 HOH HOH . J 5 HOH B 1 501 42 HOH HOH . J 5 HOH B 2 502 24 HOH HOH . J 5 HOH B 3 503 49 HOH HOH . J 5 HOH B 4 504 28 HOH HOH . J 5 HOH B 5 505 37 HOH HOH . J 5 HOH B 6 506 10 HOH HOH . J 5 HOH B 7 507 11 HOH HOH . J 5 HOH B 8 508 36 HOH HOH . J 5 HOH B 9 509 19 HOH HOH . J 5 HOH B 10 510 17 HOH HOH . J 5 HOH B 11 511 29 HOH HOH . J 5 HOH B 12 512 22 HOH HOH . J 5 HOH B 13 513 48 HOH HOH . J 5 HOH B 14 514 45 HOH HOH . J 5 HOH B 15 515 2 HOH HOH . J 5 HOH B 16 516 47 HOH HOH . J 5 HOH B 17 517 65 HOH HOH . J 5 HOH B 18 518 35 HOH HOH . J 5 HOH B 19 519 50 HOH HOH . J 5 HOH B 20 520 6 HOH HOH . J 5 HOH B 21 521 5 HOH HOH . J 5 HOH B 22 522 64 HOH HOH . J 5 HOH B 23 523 4 HOH HOH . J 5 HOH B 24 524 3 HOH HOH . J 5 HOH B 25 525 46 HOH HOH . J 5 HOH B 26 526 41 HOH HOH . J 5 HOH B 27 527 66 HOH HOH . K 5 HOH C 1 701 21 HOH HOH . K 5 HOH C 2 702 58 HOH HOH . K 5 HOH C 3 703 32 HOH HOH . K 5 HOH C 4 704 16 HOH HOH . K 5 HOH C 5 705 20 HOH HOH . K 5 HOH C 6 706 9 HOH HOH . K 5 HOH C 7 707 8 HOH HOH . K 5 HOH C 8 708 63 HOH HOH . K 5 HOH C 9 709 15 HOH HOH . K 5 HOH C 10 710 43 HOH HOH . L 5 HOH D 1 501 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 29T . . . F 4 -36.556 -35.416 6.307 1 57.81 ? C10 29T 602 A 1 HETATM 2 C C11 29T . . . F 4 -37.636 -33.777 5.188 1 62.21 ? C11 29T 602 A 1 HETATM 3 C C14 29T . . . F 4 -37.744 -35.075 5.649 1 63.18 ? C14 29T 602 A 1 HETATM 4 C C16 29T . . . F 4 -38.853 -35.954 5.493 1 66.49 ? C16 29T 602 A 1 HETATM 5 C C00 29T . . . F 4 -30.236 -34.559 8.424 1 56.68 ? C00 29T 602 A 1 HETATM 6 C C01 29T . . . F 4 -30.428 -34.097 9.718 1 48.84 ? C01 29T 602 A 1 HETATM 7 C C02 29T . . . F 4 -31.69 -33.952 10.221 1 56.53 ? C02 29T 602 A 1 HETATM 8 C C03 29T . . . F 4 -32.79 -34.272 9.437 1 54.18 ? C03 29T 602 A 1 HETATM 9 C C04 29T . . . F 4 -32.604 -34.725 8.152 1 52.11 ? C04 29T 602 A 1 HETATM 10 C C05 29T . . . F 4 -31.324 -34.879 7.624 1 54.59 ? C05 29T 602 A 1 HETATM 11 O O0A 29T . . . F 4 -33.752 -35.026 7.43 1 56.96 ? O0A 29T 602 A 1 HETATM 12 C C0C 29T . . . F 4 -34.433 -34.026 6.757 1 58.22 ? C0C 29T 602 A 1 HETATM 13 C C0V 29T . . . F 4 -35.723 -34.311 6.248 1 57.01 ? C0V 29T 602 A 1 HETATM 14 N N0W 29T . . . F 4 -36.403 -33.314 5.564 1 58.63 ? N0W 29T 602 A 1 HETATM 15 C C0X 29T . . . F 4 -35.831 -32.08 5.34 1 56.03 ? C0X 29T 602 A 1 HETATM 16 C C0Y 29T . . . F 4 -34.592 -31.811 5.803 1 59.91 ? C0Y 29T 602 A 1 HETATM 17 C C0Z 29T . . . F 4 -33.875 -32.79 6.515 1 58.51 ? C0Z 29T 602 A 1 HETATM 18 N N19 29T . . . F 4 -39.782 -36.63 5.462 1 68.09 ? N19 29T 602 A 1 HETATM 19 O O0B 29T . . . F 4 -31.225 -35.356 6.344 1 54.63 ? O0B 29T 602 A 1 HETATM 20 C C0D 29T . . . F 4 -29.896 -35.534 5.835 1 56.34 ? C0D 29T 602 A 1 HETATM 21 C C0E 29T . . . F 4 -30.021 -36.151 4.461 1 61.56 ? C0E 29T 602 A 1 HETATM 22 N N0H 29T . . . F 4 -30.766 -37.421 4.491 1 66.73 ? N0H 29T 602 A 1 HETATM 23 C C0K 29T . . . F 4 -30.085 -38.584 4.816 1 65.93 ? C0K 29T 602 A 1 HETATM 24 N N0M 29T . . . F 4 -30.861 -39.718 4.835 1 69.55 ? N0M 29T 602 A 1 HETATM 25 C C0N 29T . . . F 4 -32.214 -39.801 4.569 1 66.37 ? C0N 29T 602 A 1 HETATM 26 C C0O 29T . . . F 4 -32.831 -38.547 4.247 1 65.79 ? C0O 29T 602 A 1 HETATM 27 C C0P 29T . . . F 4 -32.103 -37.438 4.222 1 64.96 ? C0P 29T 602 A 1 HETATM 28 O O0Q 29T . . . F 4 -28.89 -38.612 5.07 1 63.61 ? O0Q 29T 602 A 1 HETATM 29 O O0S 29T . . . F 4 -32.783 -40.892 4.624 1 65.55 ? O0S 29T 602 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #