data_8STV # _model_server_result.job_id E3dDuwNvz9cP1LSM2vBYwA _model_server_result.datetime_utc '2024-11-05 05:02:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8stv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 8STV # _exptl.entry_id 8STV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.73 _cell.angle_gamma 90 _cell.entry_id 8STV _cell.length_a 111.591 _cell.length_b 73.222 _cell.length_c 170.655 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8STV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,D,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OD1 ASP 445 C ASP 443 1_555 I MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc2 C OD2 ASP 445 C ASP 443 1_555 I MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc3 C OD2 ASP 551 C ASP 549 1_555 I MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 133 n n C1 C2 EDO sing 134 n n C1 H11 EDO sing 135 n n C1 H12 EDO sing 136 n n O1 HO1 EDO sing 137 n n C2 O2 EDO sing 138 n n C2 H21 EDO sing 139 n n C2 H22 EDO sing 140 n n O2 HO2 EDO sing 141 n n # _atom_sites.entry_id 8STV _atom_sites.fract_transf_matrix[1][1] 0.008961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001216 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 601 1 SO4 SO4 . F 3 SO4 A 1 602 2 SO4 SO4 . G 4 EDO A 1 603 603 EDO EDO . H 5 3LQ A 1 604 1 3LQ 3LQ . I 6 MG C 1 601 1 MG MG . J 4 EDO C 1 602 601 EDO EDO . K 5 3LQ C 1 603 2 3LQ 3LQ . L 7 HOH A 1 701 25 HOH HOH . L 7 HOH A 2 702 45 HOH HOH . L 7 HOH A 3 703 68 HOH HOH . L 7 HOH A 4 704 61 HOH HOH . L 7 HOH A 5 705 63 HOH HOH . L 7 HOH A 6 706 58 HOH HOH . L 7 HOH A 7 707 35 HOH HOH . L 7 HOH A 8 708 2 HOH HOH . L 7 HOH A 9 709 50 HOH HOH . L 7 HOH A 10 710 10 HOH HOH . L 7 HOH A 11 711 15 HOH HOH . L 7 HOH A 12 712 64 HOH HOH . L 7 HOH A 13 713 7 HOH HOH . L 7 HOH A 14 714 46 HOH HOH . L 7 HOH A 15 715 24 HOH HOH . L 7 HOH A 16 716 33 HOH HOH . L 7 HOH A 17 717 9 HOH HOH . L 7 HOH A 18 718 19 HOH HOH . L 7 HOH A 19 719 74 HOH HOH . L 7 HOH A 20 720 1 HOH HOH . L 7 HOH A 21 721 47 HOH HOH . L 7 HOH A 22 722 51 HOH HOH . L 7 HOH A 23 723 43 HOH HOH . L 7 HOH A 24 724 28 HOH HOH . L 7 HOH A 25 725 30 HOH HOH . L 7 HOH A 26 726 14 HOH HOH . L 7 HOH A 27 727 42 HOH HOH . L 7 HOH A 28 728 29 HOH HOH . L 7 HOH A 29 729 23 HOH HOH . L 7 HOH A 30 730 75 HOH HOH . L 7 HOH A 31 731 70 HOH HOH . M 7 HOH B 1 501 13 HOH HOH . M 7 HOH B 2 502 54 HOH HOH . M 7 HOH B 3 503 21 HOH HOH . M 7 HOH B 4 504 17 HOH HOH . M 7 HOH B 5 505 26 HOH HOH . M 7 HOH B 6 506 4 HOH HOH . M 7 HOH B 7 507 11 HOH HOH . M 7 HOH B 8 508 60 HOH HOH . M 7 HOH B 9 509 48 HOH HOH . M 7 HOH B 10 510 49 HOH HOH . M 7 HOH B 11 511 6 HOH HOH . M 7 HOH B 12 512 3 HOH HOH . M 7 HOH B 13 513 67 HOH HOH . M 7 HOH B 14 514 44 HOH HOH . M 7 HOH B 15 515 52 HOH HOH . M 7 HOH B 16 516 20 HOH HOH . M 7 HOH B 17 517 8 HOH HOH . M 7 HOH B 18 518 22 HOH HOH . M 7 HOH B 19 519 34 HOH HOH . M 7 HOH B 20 520 31 HOH HOH . M 7 HOH B 21 521 5 HOH HOH . M 7 HOH B 22 522 39 HOH HOH . M 7 HOH B 23 523 73 HOH HOH . M 7 HOH B 24 524 41 HOH HOH . M 7 HOH B 25 525 69 HOH HOH . M 7 HOH B 26 526 57 HOH HOH . M 7 HOH B 27 527 72 HOH HOH . M 7 HOH B 28 528 32 HOH HOH . M 7 HOH B 29 529 40 HOH HOH . N 7 HOH C 1 701 65 HOH HOH . N 7 HOH C 2 702 71 HOH HOH . N 7 HOH C 3 703 27 HOH HOH . O 7 HOH D 1 501 38 HOH HOH . O 7 HOH D 2 502 59 HOH HOH . O 7 HOH D 3 503 56 HOH HOH . O 7 HOH D 4 504 66 HOH HOH . O 7 HOH D 5 505 53 HOH HOH . O 7 HOH D 6 506 62 HOH HOH . O 7 HOH D 7 507 36 HOH HOH . O 7 HOH D 8 508 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -45.434 -33.104 0.085 1 87.56 ? C1 EDO 603 A 1 HETATM 2 O O1 EDO . . . G 4 -44.497 -33.731 0.97 1 75.47 ? O1 EDO 603 A 1 HETATM 3 C C2 EDO . . . G 4 -45.082 -33.427 -1.364 1 85.73 ? C2 EDO 603 A 1 HETATM 4 O O2 EDO . . . G 4 -44.651 -34.788 -1.474 1 81.65 ? O2 EDO 603 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #