data_8STW
#
_model_server_result.job_id            JncMDv43xUfaLLh6yVfnyQ 
_model_server_result.datetime_utc      '2024-11-22 21:13:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8stw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":501}' 
#
_entry.id    8STW 
#
_exptl.entry_id    8STW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         106.15 
_cell.angle_beta          105.49 
_cell.angle_gamma         107.47 
_cell.entry_id            8STW 
_cell.length_a            89.462 
_cell.length_b            90.189 
_cell.length_c            104.224 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8STW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 76 A LYS 119 1_555 G C4A PLP . A PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.286 ? 
covale ? covale2 B NZ LYS 76 B LYS 119 1_555 I C4A PLP . B PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.274 ? 
covale ? covale3 C NZ LYS 76 C LYS 119 1_555 K C4A PLP . C PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.255 ? 
covale ? covale4 D NZ LYS 76 D LYS 119 1_555 M C4A PLP . D PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.254 ? 
covale ? covale5 E NZ LYS 76 E LYS 119 1_555 O C4A PLP . E PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.242 ? 
covale ? covale6 F NZ LYS 76 F LYS 119 1_555 Q C4A PLP . F PLP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.251 ? 
metalc ? metalc1 A SG CYS 9 A CYS 52 1_555 H FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc2 A NE2 HIS 22 A HIS 65 1_555 H FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc3 B SG CYS 9 B CYS 52 1_555 J FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc4 B NE2 HIS 22 B HIS 65 1_555 J FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc5 C SG CYS 9 C CYS 52 1_555 L FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc6 C NE2 HIS 22 C HIS 65 1_555 L FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc7 D SG CYS 9 D CYS 52 1_555 N FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc8 D NE2 HIS 22 D HIS 65 1_555 N FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc9 E SG CYS 9 E CYS 52 1_555 P FE HEM . E HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc10 E NE2 HIS 22 E HIS 65 1_555 P FE HEM . E HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc11 F SG CYS 9 F CYS 52 1_555 R FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc12 F NE2 HIS 22 F HIS 65 1_555 R FE HEM . F HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 342 n y 
N1 C6 PLP sing 343 n y 
C2 C2A PLP sing 344 n n 
C2 C3 PLP sing 345 n y 
C2A H2A1 PLP sing 346 n n 
C2A H2A2 PLP sing 347 n n 
C2A H2A3 PLP sing 348 n n 
C3 O3 PLP sing 349 n n 
C3 C4 PLP doub 350 n y 
O3 HO3 PLP sing 351 n n 
C4 C4A PLP sing 352 n n 
C4 C5 PLP sing 353 n y 
C4A O4A PLP doub 354 n n 
C4A H4A PLP sing 355 n n 
C5 C6 PLP doub 356 n y 
C5 C5A PLP sing 357 n n 
C6 H6 PLP sing 358 n n 
C5A O4P PLP sing 359 n n 
C5A H5A1 PLP sing 360 n n 
C5A H5A2 PLP sing 361 n n 
O4P P PLP sing 362 n n 
P O1P PLP doub 363 n n 
P O2P PLP sing 364 n n 
P O3P PLP sing 365 n n 
O2P HOP2 PLP sing 366 n n 
O3P HOP3 PLP sing 367 n n 
#
_atom_sites.entry_id                     8STW 
_atom_sites.fract_transf_matrix[1][1]    0.011178 
_atom_sites.fract_transf_matrix[1][2]    0.003519 
_atom_sites.fract_transf_matrix[1][3]    0.004854 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011624 
_atom_sites.fract_transf_matrix[2][3]    0.004922 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010812 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PLP A 1 501 501 PLP PLP . 
H 3 HEM A 1 502 502 HEM HEM . 
I 2 PLP B 1 501 501 PLP PLP . 
J 3 HEM B 1 502 502 HEM HEM . 
K 2 PLP C 1 501 501 PLP PLP . 
L 3 HEM C 1 502 502 HEM HEM . 
M 2 PLP D 1 501 501 PLP PLP . 
N 3 HEM D 1 502 502 HEM HEM . 
O 2 PLP E 1 501 501 PLP PLP . 
P 3 HEM E 1 502 502 HEM HEM . 
Q 2 PLP F 1 501 501 PLP PLP . 
R 3 HEM F 1 502 502 HEM HEM . 
S 4 HOH A 1 601 81 HOH HOH . 
S 4 HOH A 2 602 19 HOH HOH . 
S 4 HOH A 3 603 78 HOH HOH . 
S 4 HOH A 4 604 22 HOH HOH . 
S 4 HOH A 5 605 59 HOH HOH . 
S 4 HOH A 6 606 36 HOH HOH . 
S 4 HOH A 7 607 38 HOH HOH . 
S 4 HOH A 8 608 37 HOH HOH . 
S 4 HOH A 9 609 66 HOH HOH . 
S 4 HOH A 10 610 74 HOH HOH . 
S 4 HOH A 11 611 15 HOH HOH . 
S 4 HOH A 12 612 35 HOH HOH . 
S 4 HOH A 13 613 34 HOH HOH . 
S 4 HOH A 14 614 14 HOH HOH . 
S 4 HOH A 15 615 29 HOH HOH . 
S 4 HOH A 16 616 10 HOH HOH . 
S 4 HOH A 17 617 80 HOH HOH . 
S 4 HOH A 18 618 75 HOH HOH . 
S 4 HOH A 19 619 71 HOH HOH . 
T 4 HOH B 1 601 47 HOH HOH . 
T 4 HOH B 2 602 25 HOH HOH . 
T 4 HOH B 3 603 43 HOH HOH . 
T 4 HOH B 4 604 60 HOH HOH . 
T 4 HOH B 5 605 84 HOH HOH . 
T 4 HOH B 6 606 39 HOH HOH . 
T 4 HOH B 7 607 83 HOH HOH . 
T 4 HOH B 8 608 56 HOH HOH . 
T 4 HOH B 9 609 77 HOH HOH . 
T 4 HOH B 10 610 69 HOH HOH . 
U 4 HOH C 1 601 50 HOH HOH . 
U 4 HOH C 2 602 33 HOH HOH . 
U 4 HOH C 3 603 68 HOH HOH . 
U 4 HOH C 4 604 48 HOH HOH . 
U 4 HOH C 5 605 4 HOH HOH . 
U 4 HOH C 6 606 1 HOH HOH . 
U 4 HOH C 7 607 11 HOH HOH . 
U 4 HOH C 8 608 6 HOH HOH . 
U 4 HOH C 9 609 42 HOH HOH . 
U 4 HOH C 10 610 16 HOH HOH . 
U 4 HOH C 11 611 51 HOH HOH . 
U 4 HOH C 12 612 62 HOH HOH . 
U 4 HOH C 13 613 45 HOH HOH . 
U 4 HOH C 14 614 7 HOH HOH . 
U 4 HOH C 15 615 18 HOH HOH . 
U 4 HOH C 16 616 24 HOH HOH . 
V 4 HOH D 1 601 41 HOH HOH . 
V 4 HOH D 2 602 44 HOH HOH . 
V 4 HOH D 3 603 9 HOH HOH . 
V 4 HOH D 4 604 8 HOH HOH . 
V 4 HOH D 5 605 26 HOH HOH . 
V 4 HOH D 6 606 2 HOH HOH . 
V 4 HOH D 7 607 31 HOH HOH . 
V 4 HOH D 8 608 27 HOH HOH . 
V 4 HOH D 9 609 55 HOH HOH . 
V 4 HOH D 10 610 13 HOH HOH . 
W 4 HOH E 1 601 64 HOH HOH . 
W 4 HOH E 2 602 67 HOH HOH . 
W 4 HOH E 3 603 3 HOH HOH . 
W 4 HOH E 4 604 23 HOH HOH . 
W 4 HOH E 5 605 63 HOH HOH . 
W 4 HOH E 6 606 70 HOH HOH . 
X 4 HOH F 1 601 72 HOH HOH . 
X 4 HOH F 2 602 58 HOH HOH . 
X 4 HOH F 3 603 76 HOH HOH . 
X 4 HOH F 4 604 28 HOH HOH . 
X 4 HOH F 5 605 49 HOH HOH . 
X 4 HOH F 6 606 5 HOH HOH . 
X 4 HOH F 7 607 65 HOH HOH . 
X 4 HOH F 8 608 54 HOH HOH . 
X 4 HOH F 9 609 46 HOH HOH . 
X 4 HOH F 10 610 40 HOH HOH . 
X 4 HOH F 11 611 79 HOH HOH . 
X 4 HOH F 12 612 53 HOH HOH . 
X 4 HOH F 13 613 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . Q 2 11.397 -35.535 37.454 1 26.86 ? N1 PLP 501 F 1 
HETATM 2 C C2 PLP . . . Q 2 10.221 -35.188 37.988 1 26.46 ? C2 PLP 501 F 1 
HETATM 3 C C2A PLP . . . Q 2 9.03 -35.022 37.099 1 28.56 ? C2A PLP 501 F 1 
HETATM 4 C C3 PLP . . . Q 2 10.079 -34.987 39.355 1 22.79 ? C3 PLP 501 F 1 
HETATM 5 O O3 PLP . . . Q 2 8.853 -34.669 39.788 1 24.06 ? O3 PLP 501 F 1 
HETATM 6 C C4 PLP . . . Q 2 11.181 -35.177 40.205 1 23.54 ? C4 PLP 501 F 1 
HETATM 7 C C4A PLP . . . Q 2 11.062 -34.975 41.649 1 24.25 ? C4A PLP 501 F 1 
HETATM 8 C C5 PLP . . . Q 2 12.411 -35.524 39.62 1 26.59 ? C5 PLP 501 F 1 
HETATM 9 C C6 PLP . . . Q 2 12.471 -35.709 38.257 1 25.13 ? C6 PLP 501 F 1 
HETATM 10 C C5A PLP . . . Q 2 13.652 -35.701 40.45 1 28.16 ? C5A PLP 501 F 1 
HETATM 11 O O4P PLP . . . Q 2 13.461 -36.592 41.587 1 27.83 ? O4P PLP 501 F 1 
HETATM 12 P P PLP . . . Q 2 14.273 -36.284 42.971 1 27.3 ? P PLP 501 F 1 
HETATM 13 O O1P PLP . . . Q 2 15.712 -35.981 42.609 1 27.27 ? O1P PLP 501 F 1 
HETATM 14 O O2P PLP . . . Q 2 14.166 -37.609 43.762 1 24.84 ? O2P PLP 501 F 1 
HETATM 15 O O3P PLP . . . Q 2 13.516 -35.115 43.58 1 23 ? O3P PLP 501 F 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#