data_8SU4 # _model_server_result.job_id lyRQro36j9kKFSHrfd_VSQ _model_server_result.datetime_utc '2024-11-18 14:44:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8su4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8SU4 # _exptl.entry_id 8SU4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.865 _cell.angle_gamma 90 _cell.entry_id 8SU4 _cell.length_a 52.883 _cell.length_b 46.987 _cell.length_c 75.53 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 120 A ASP 99 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A OD1 ASP 120 A ASP 99 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 A OD1 ASN 261 A ASN 240 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 A OG SER 265 A SER 244 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 A OE2 GLU 269 A GLU 248 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc6 F MG MG . A MG 405 1_555 I O3 POP . A POP 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc7 F MG MG . A MG 405 1_555 I O5 POP . A POP 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 F MG MG . A MG 405 1_555 K O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc9 F MG MG . A MG 405 1_555 K O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc10 F MG MG . A MG 405 1_555 K O HOH . A HOH 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc11 G MG MG . A MG 406 1_555 I O5 POP . A POP 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc12 G MG MG . A MG 406 1_555 K O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc13 G MG MG . A MG 406 1_555 K O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc14 G MG MG . A MG 406 1_555 K O HOH . A HOH 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc15 G MG MG . A MG 406 1_555 K O HOH . A HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc16 H MG MG . A MG 407 1_555 I O1 POP . A POP 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc17 H MG MG . A MG 407 1_555 I O4 POP . A POP 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc18 H MG MG . A MG 407 1_555 K O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 165 n n C1 C2 GOL sing 166 n n C1 H11 GOL sing 167 n n C1 H12 GOL sing 168 n n O1 HO1 GOL sing 169 n n C2 O2 GOL sing 170 n n C2 C3 GOL sing 171 n n C2 H2 GOL sing 172 n n O2 HO2 GOL sing 173 n n C3 O3 GOL sing 174 n n C3 H31 GOL sing 175 n n C3 H32 GOL sing 176 n n O3 HO3 GOL sing 177 n n # _atom_sites.entry_id 8SU4 _atom_sites.fract_transf_matrix[1][1] 0.01891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001942 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 GOL A 1 402 2 GOL GOL . D 3 GOL A 1 403 3 GOL GOL . E 3 GOL A 1 404 4 GOL GOL . F 4 MG A 1 405 5 MG MG . G 4 MG A 1 406 6 MG MG . H 4 MG A 1 407 7 MG MG . I 5 POP A 1 408 8 POP POP . J 6 BTM A 1 409 9 BTM BTM . K 7 HOH A 1 501 194 HOH HOH . K 7 HOH A 2 502 192 HOH HOH . K 7 HOH A 3 503 180 HOH HOH . K 7 HOH A 4 504 202 HOH HOH . K 7 HOH A 5 505 149 HOH HOH . K 7 HOH A 6 506 182 HOH HOH . K 7 HOH A 7 507 17 HOH HOH . K 7 HOH A 8 508 83 HOH HOH . K 7 HOH A 9 509 136 HOH HOH . K 7 HOH A 10 510 153 HOH HOH . K 7 HOH A 11 511 71 HOH HOH . K 7 HOH A 12 512 193 HOH HOH . K 7 HOH A 13 513 26 HOH HOH . K 7 HOH A 14 514 185 HOH HOH . K 7 HOH A 15 515 2 HOH HOH . K 7 HOH A 16 516 40 HOH HOH . K 7 HOH A 17 517 167 HOH HOH . K 7 HOH A 18 518 4 HOH HOH . K 7 HOH A 19 519 90 HOH HOH . K 7 HOH A 20 520 119 HOH HOH . K 7 HOH A 21 521 132 HOH HOH . K 7 HOH A 22 522 33 HOH HOH . K 7 HOH A 23 523 88 HOH HOH . K 7 HOH A 24 524 68 HOH HOH . K 7 HOH A 25 525 35 HOH HOH . K 7 HOH A 26 526 34 HOH HOH . K 7 HOH A 27 527 80 HOH HOH . K 7 HOH A 28 528 28 HOH HOH . K 7 HOH A 29 529 137 HOH HOH . K 7 HOH A 30 530 117 HOH HOH . K 7 HOH A 31 531 197 HOH HOH . K 7 HOH A 32 532 49 HOH HOH . K 7 HOH A 33 533 186 HOH HOH . K 7 HOH A 34 534 155 HOH HOH . K 7 HOH A 35 535 6 HOH HOH . K 7 HOH A 36 536 170 HOH HOH . K 7 HOH A 37 537 111 HOH HOH . K 7 HOH A 38 538 62 HOH HOH . K 7 HOH A 39 539 20 HOH HOH . K 7 HOH A 40 540 11 HOH HOH . K 7 HOH A 41 541 105 HOH HOH . K 7 HOH A 42 542 66 HOH HOH . K 7 HOH A 43 543 27 HOH HOH . K 7 HOH A 44 544 52 HOH HOH . K 7 HOH A 45 545 173 HOH HOH . K 7 HOH A 46 546 84 HOH HOH . K 7 HOH A 47 547 31 HOH HOH . K 7 HOH A 48 548 129 HOH HOH . K 7 HOH A 49 549 9 HOH HOH . K 7 HOH A 50 550 24 HOH HOH . K 7 HOH A 51 551 195 HOH HOH . K 7 HOH A 52 552 64 HOH HOH . K 7 HOH A 53 553 51 HOH HOH . K 7 HOH A 54 554 44 HOH HOH . K 7 HOH A 55 555 196 HOH HOH . K 7 HOH A 56 556 82 HOH HOH . K 7 HOH A 57 557 47 HOH HOH . K 7 HOH A 58 558 199 HOH HOH . K 7 HOH A 59 559 154 HOH HOH . K 7 HOH A 60 560 30 HOH HOH . K 7 HOH A 61 561 200 HOH HOH . K 7 HOH A 62 562 95 HOH HOH . K 7 HOH A 63 563 3 HOH HOH . K 7 HOH A 64 564 106 HOH HOH . K 7 HOH A 65 565 12 HOH HOH . K 7 HOH A 66 566 70 HOH HOH . K 7 HOH A 67 567 140 HOH HOH . K 7 HOH A 68 568 32 HOH HOH . K 7 HOH A 69 569 23 HOH HOH . K 7 HOH A 70 570 43 HOH HOH . K 7 HOH A 71 571 67 HOH HOH . K 7 HOH A 72 572 76 HOH HOH . K 7 HOH A 73 573 22 HOH HOH . K 7 HOH A 74 574 59 HOH HOH . K 7 HOH A 75 575 112 HOH HOH . K 7 HOH A 76 576 86 HOH HOH . K 7 HOH A 77 577 124 HOH HOH . K 7 HOH A 78 578 21 HOH HOH . K 7 HOH A 79 579 100 HOH HOH . K 7 HOH A 80 580 116 HOH HOH . K 7 HOH A 81 581 201 HOH HOH . K 7 HOH A 82 582 1 HOH HOH . K 7 HOH A 83 583 103 HOH HOH . K 7 HOH A 84 584 165 HOH HOH . K 7 HOH A 85 585 94 HOH HOH . K 7 HOH A 86 586 15 HOH HOH . K 7 HOH A 87 587 63 HOH HOH . K 7 HOH A 88 588 7 HOH HOH . K 7 HOH A 89 589 174 HOH HOH . K 7 HOH A 90 590 8 HOH HOH . K 7 HOH A 91 591 141 HOH HOH . K 7 HOH A 92 592 198 HOH HOH . K 7 HOH A 93 593 126 HOH HOH . K 7 HOH A 94 594 57 HOH HOH . K 7 HOH A 95 595 107 HOH HOH . K 7 HOH A 96 596 109 HOH HOH . K 7 HOH A 97 597 29 HOH HOH . K 7 HOH A 98 598 19 HOH HOH . K 7 HOH A 99 599 53 HOH HOH . K 7 HOH A 100 600 25 HOH HOH . K 7 HOH A 101 601 161 HOH HOH . K 7 HOH A 102 602 187 HOH HOH . K 7 HOH A 103 603 101 HOH HOH . K 7 HOH A 104 604 120 HOH HOH . K 7 HOH A 105 605 133 HOH HOH . K 7 HOH A 106 606 123 HOH HOH . K 7 HOH A 107 607 54 HOH HOH . K 7 HOH A 108 608 45 HOH HOH . K 7 HOH A 109 609 73 HOH HOH . K 7 HOH A 110 610 72 HOH HOH . K 7 HOH A 111 611 97 HOH HOH . K 7 HOH A 112 612 85 HOH HOH . K 7 HOH A 113 613 39 HOH HOH . K 7 HOH A 114 614 134 HOH HOH . K 7 HOH A 115 615 65 HOH HOH . K 7 HOH A 116 616 75 HOH HOH . K 7 HOH A 117 617 164 HOH HOH . K 7 HOH A 118 618 142 HOH HOH . K 7 HOH A 119 619 148 HOH HOH . K 7 HOH A 120 620 104 HOH HOH . K 7 HOH A 121 621 158 HOH HOH . K 7 HOH A 122 622 55 HOH HOH . K 7 HOH A 123 623 41 HOH HOH . K 7 HOH A 124 624 102 HOH HOH . K 7 HOH A 125 625 46 HOH HOH . K 7 HOH A 126 626 127 HOH HOH . K 7 HOH A 127 627 135 HOH HOH . K 7 HOH A 128 628 38 HOH HOH . K 7 HOH A 129 629 139 HOH HOH . K 7 HOH A 130 630 92 HOH HOH . K 7 HOH A 131 631 42 HOH HOH . K 7 HOH A 132 632 60 HOH HOH . K 7 HOH A 133 633 18 HOH HOH . K 7 HOH A 134 634 108 HOH HOH . K 7 HOH A 135 635 74 HOH HOH . K 7 HOH A 136 636 143 HOH HOH . K 7 HOH A 137 637 81 HOH HOH . K 7 HOH A 138 638 128 HOH HOH . K 7 HOH A 139 639 157 HOH HOH . K 7 HOH A 140 640 118 HOH HOH . K 7 HOH A 141 641 16 HOH HOH . K 7 HOH A 142 642 114 HOH HOH . K 7 HOH A 143 643 10 HOH HOH . K 7 HOH A 144 644 61 HOH HOH . K 7 HOH A 145 645 169 HOH HOH . K 7 HOH A 146 646 58 HOH HOH . K 7 HOH A 147 647 79 HOH HOH . K 7 HOH A 148 648 115 HOH HOH . K 7 HOH A 149 649 5 HOH HOH . K 7 HOH A 150 650 162 HOH HOH . K 7 HOH A 151 651 156 HOH HOH . K 7 HOH A 152 652 203 HOH HOH . K 7 HOH A 153 653 96 HOH HOH . K 7 HOH A 154 654 163 HOH HOH . K 7 HOH A 155 655 13 HOH HOH . K 7 HOH A 156 656 151 HOH HOH . K 7 HOH A 157 657 36 HOH HOH . K 7 HOH A 158 658 14 HOH HOH . K 7 HOH A 159 659 189 HOH HOH . K 7 HOH A 160 660 37 HOH HOH . K 7 HOH A 161 661 130 HOH HOH . K 7 HOH A 162 662 110 HOH HOH . K 7 HOH A 163 663 89 HOH HOH . K 7 HOH A 164 664 166 HOH HOH . K 7 HOH A 165 665 177 HOH HOH . K 7 HOH A 166 666 168 HOH HOH . K 7 HOH A 167 667 91 HOH HOH . K 7 HOH A 168 668 78 HOH HOH . K 7 HOH A 169 669 69 HOH HOH . K 7 HOH A 170 670 93 HOH HOH . K 7 HOH A 171 671 191 HOH HOH . K 7 HOH A 172 672 184 HOH HOH . K 7 HOH A 173 673 48 HOH HOH . K 7 HOH A 174 674 50 HOH HOH . K 7 HOH A 175 675 190 HOH HOH . K 7 HOH A 176 676 152 HOH HOH . K 7 HOH A 177 677 87 HOH HOH . K 7 HOH A 178 678 178 HOH HOH . K 7 HOH A 179 679 121 HOH HOH . K 7 HOH A 180 680 144 HOH HOH . K 7 HOH A 181 681 188 HOH HOH . K 7 HOH A 182 682 98 HOH HOH . K 7 HOH A 183 683 183 HOH HOH . K 7 HOH A 184 684 205 HOH HOH . K 7 HOH A 185 685 204 HOH HOH . K 7 HOH A 186 686 179 HOH HOH . K 7 HOH A 187 687 181 HOH HOH . K 7 HOH A 188 688 56 HOH HOH . K 7 HOH A 189 689 160 HOH HOH . K 7 HOH A 190 690 150 HOH HOH . K 7 HOH A 191 691 113 HOH HOH . K 7 HOH A 192 692 99 HOH HOH . K 7 HOH A 193 693 122 HOH HOH . K 7 HOH A 194 694 172 HOH HOH . K 7 HOH A 195 695 146 HOH HOH . K 7 HOH A 196 696 125 HOH HOH . K 7 HOH A 197 697 171 HOH HOH . K 7 HOH A 198 698 159 HOH HOH . K 7 HOH A 199 699 138 HOH HOH . K 7 HOH A 200 700 77 HOH HOH . K 7 HOH A 201 701 175 HOH HOH . K 7 HOH A 202 702 145 HOH HOH . K 7 HOH A 203 703 131 HOH HOH . K 7 HOH A 204 704 176 HOH HOH . K 7 HOH A 205 705 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 1.113 -13.741 7.092 0.77 36.41 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 0.252 -14.181 8.113 0.77 37.64 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 2.182 -14.806 6.888 0.77 33.4 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 1.547 -15.887 6.251 0.77 37.47 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 3.354 -14.315 6.024 0.77 31.55 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 4.37 -15.27 6.087 0.77 38.93 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #