data_8SU8 # _model_server_result.job_id P2QhQI8TDw45aDMA91G7rQ _model_server_result.datetime_utc '2024-11-29 00:05:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8su8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8SU8 # _exptl.entry_id 8SU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.598 _cell.angle_gamma 90 _cell.entry_id 8SU8 _cell.length_a 57.5 _cell.length_b 77.536 _cell.length_c 58.431 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 302 A LYS 720 1_555 C C1 XE2 . A XE2 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 B OG SER 17 B SER 17 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc2 B OG1 THR 35 B THR 35 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc3 D MG MG . B MG 200 1_555 E O1B GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc4 D MG MG . B MG 200 1_555 E O1G GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc5 D MG MG . B MG 200 1_555 G O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 D MG MG . B MG 200 1_555 G O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 8SU8 _atom_sites.fract_transf_matrix[1][1] 0.017391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000485 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 XE2 A 1 801 801 XE2 0WJ . D 4 MG B 1 200 200 MG MG . E 5 GNP B 1 201 201 GNP GNP . F 6 HOH A 1 901 24 HOH HOH . F 6 HOH A 2 902 2 HOH HOH . F 6 HOH A 3 903 56 HOH HOH . F 6 HOH A 4 904 49 HOH HOH . F 6 HOH A 5 905 83 HOH HOH . F 6 HOH A 6 906 9 HOH HOH . F 6 HOH A 7 907 71 HOH HOH . F 6 HOH A 8 908 20 HOH HOH . F 6 HOH A 9 909 39 HOH HOH . F 6 HOH A 10 910 33 HOH HOH . F 6 HOH A 11 911 41 HOH HOH . F 6 HOH A 12 912 42 HOH HOH . F 6 HOH A 13 913 38 HOH HOH . F 6 HOH A 14 914 3 HOH HOH . F 6 HOH A 15 915 25 HOH HOH . F 6 HOH A 16 916 37 HOH HOH . F 6 HOH A 17 917 43 HOH HOH . F 6 HOH A 18 918 8 HOH HOH . F 6 HOH A 19 919 28 HOH HOH . F 6 HOH A 20 920 31 HOH HOH . F 6 HOH A 21 921 54 HOH HOH . F 6 HOH A 22 922 27 HOH HOH . F 6 HOH A 23 923 30 HOH HOH . F 6 HOH A 24 924 10 HOH HOH . F 6 HOH A 25 925 23 HOH HOH . F 6 HOH A 26 926 6 HOH HOH . F 6 HOH A 27 927 62 HOH HOH . F 6 HOH A 28 928 11 HOH HOH . F 6 HOH A 29 929 16 HOH HOH . F 6 HOH A 30 930 4 HOH HOH . F 6 HOH A 31 931 19 HOH HOH . F 6 HOH A 32 932 58 HOH HOH . F 6 HOH A 33 933 22 HOH HOH . F 6 HOH A 34 934 29 HOH HOH . F 6 HOH A 35 935 17 HOH HOH . F 6 HOH A 36 936 44 HOH HOH . F 6 HOH A 37 937 61 HOH HOH . F 6 HOH A 38 938 36 HOH HOH . F 6 HOH A 39 939 53 HOH HOH . F 6 HOH A 40 940 48 HOH HOH . F 6 HOH A 41 941 59 HOH HOH . F 6 HOH A 42 942 63 HOH HOH . F 6 HOH A 43 943 45 HOH HOH . F 6 HOH A 44 944 64 HOH HOH . F 6 HOH A 45 945 46 HOH HOH . F 6 HOH A 46 946 55 HOH HOH . F 6 HOH A 47 947 35 HOH HOH . F 6 HOH A 48 948 52 HOH HOH . F 6 HOH A 49 949 34 HOH HOH . F 6 HOH A 50 950 57 HOH HOH . F 6 HOH A 51 951 60 HOH HOH . F 6 HOH A 52 952 50 HOH HOH . F 6 HOH A 53 953 51 HOH HOH . G 6 HOH B 1 301 18 HOH HOH . G 6 HOH B 2 302 15 HOH HOH . G 6 HOH B 3 303 70 HOH HOH . G 6 HOH B 4 304 81 HOH HOH . G 6 HOH B 5 305 78 HOH HOH . G 6 HOH B 6 306 82 HOH HOH . G 6 HOH B 7 307 66 HOH HOH . G 6 HOH B 8 308 72 HOH HOH . G 6 HOH B 9 309 1 HOH HOH . G 6 HOH B 10 310 14 HOH HOH . G 6 HOH B 11 311 69 HOH HOH . G 6 HOH B 12 312 21 HOH HOH . G 6 HOH B 13 313 67 HOH HOH . G 6 HOH B 14 314 68 HOH HOH . G 6 HOH B 15 315 12 HOH HOH . G 6 HOH B 16 316 13 HOH HOH . G 6 HOH B 17 317 5 HOH HOH . G 6 HOH B 18 318 77 HOH HOH . G 6 HOH B 19 319 75 HOH HOH . G 6 HOH B 20 320 73 HOH HOH . G 6 HOH B 21 321 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 5 2.739 6.946 30.976 1 38.38 ? PG GNP 201 B 1 HETATM 2 O O1G GNP . . . E 5 3.349 7.828 29.929 1 38.7 ? O1G GNP 201 B 1 HETATM 3 O O2G GNP . . . E 5 1.482 7.608 31.54 1 34.74 ? O2G GNP 201 B 1 HETATM 4 O O3G GNP . . . E 5 3.776 6.732 32.11 1 42.42 ? O3G GNP 201 B 1 HETATM 5 N N3B GNP . . . E 5 2.334 5.442 30.271 1 34.94 ? N3B GNP 201 B 1 HETATM 6 P PB GNP . . . E 5 1.258 5.356 29.034 1 36.61 ? PB GNP 201 B 1 HETATM 7 O O1B GNP . . . E 5 1.662 6.265 27.903 1 28.84 ? O1B GNP 201 B 1 HETATM 8 O O2B GNP . . . E 5 -0.109 5.753 29.527 1 37.51 ? O2B GNP 201 B 1 HETATM 9 O O3A GNP . . . E 5 1.207 3.81 28.483 1 32.56 ? O3A GNP 201 B 1 HETATM 10 P PA GNP . . . E 5 2.165 3.287 27.331 1 40.64 ? PA GNP 201 B 1 HETATM 11 O O1A GNP . . . E 5 1.563 3.762 26.011 1 34.19 -1 O1A GNP 201 B 1 HETATM 12 O O2A GNP . . . E 5 3.567 3.684 27.59 1 29.06 ? O2A GNP 201 B 1 HETATM 13 O O5' GNP . . . E 5 1.998 1.724 27.412 1 44.53 ? O5' GNP 201 B 1 HETATM 14 C C5' GNP . . . E 5 2.48 0.975 28.548 1 45.08 ? C5' GNP 201 B 1 HETATM 15 C C4' GNP . . . E 5 2.677 -0.467 28.147 1 47.98 ? C4' GNP 201 B 1 HETATM 16 O O4' GNP . . . E 5 1.409 -1.046 27.76 1 43.16 ? O4' GNP 201 B 1 HETATM 17 C C3' GNP . . . E 5 3.635 -0.705 26.979 1 46.16 ? C3' GNP 201 B 1 HETATM 18 O O3' GNP . . . E 5 4.452 -1.847 27.213 1 49.79 ? O3' GNP 201 B 1 HETATM 19 C C2' GNP . . . E 5 2.689 -0.918 25.794 1 39.69 ? C2' GNP 201 B 1 HETATM 20 O O2' GNP . . . E 5 3.262 -1.755 24.796 1 45.49 ? O2' GNP 201 B 1 HETATM 21 C C1' GNP . . . E 5 1.518 -1.625 26.475 1 46.38 ? C1' GNP 201 B 1 HETATM 22 N N9 GNP . . . E 5 0.24 -1.439 25.771 1 43.89 ? N9 GNP 201 B 1 HETATM 23 C C8 GNP . . . E 5 -0.349 -0.248 25.435 1 38.76 ? C8 GNP 201 B 1 HETATM 24 N N7 GNP . . . E 5 -1.492 -0.394 24.805 1 41.97 ? N7 GNP 201 B 1 HETATM 25 C C5 GNP . . . E 5 -1.662 -1.766 24.722 1 41.76 ? C5 GNP 201 B 1 HETATM 26 C C6 GNP . . . E 5 -2.723 -2.556 24.142 1 42.94 ? C6 GNP 201 B 1 HETATM 27 O O6 GNP . . . E 5 -3.736 -2.144 23.578 1 47.98 ? O6 GNP 201 B 1 HETATM 28 N N1 GNP . . . E 5 -2.492 -3.91 24.281 1 48.59 ? N1 GNP 201 B 1 HETATM 29 C C2 GNP . . . E 5 -1.397 -4.466 24.89 1 53.65 ? C2 GNP 201 B 1 HETATM 30 N N2 GNP . . . E 5 -1.341 -5.799 24.932 1 54.11 ? N2 GNP 201 B 1 HETATM 31 N N3 GNP . . . E 5 -0.41 -3.749 25.428 1 49.72 ? N3 GNP 201 B 1 HETATM 32 C C4 GNP . . . E 5 -0.605 -2.422 25.312 1 39.98 ? C4 GNP 201 B 1 # _model_server_stats.io_time_ms 143 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1195 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 32 #