data_8SUN # _model_server_result.job_id b3n2h_h-FZP8rt4UfxxNSw _model_server_result.datetime_utc '2024-11-19 17:51:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sun # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 8SUN # _exptl.entry_id 8SUN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 280 A CYS 331 1_555 A SG CYS 321 A CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 287 A CYS 338 1_555 A SG CYS 314 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 298 A CYS 349 1_555 A SG CYS 756 A CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 301 A CYS 352 1_555 A SG CYS 305 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 545 A CYS 596 1_555 A SG CYS 550 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 280 B CYS 331 1_555 B SG CYS 321 B CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 B SG CYS 287 B CYS 338 1_555 B SG CYS 314 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 B SG CYS 298 B CYS 349 1_555 B SG CYS 756 B CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 B SG CYS 301 B CYS 352 1_555 B SG CYS 305 B CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 545 B CYS 596 1_555 B SG CYS 550 B CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 311 A ASN 362 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.244 ? covale ? covale2 B ND2 ASN 311 B ASN 362 1_555 G C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 B NZ LYS 319 B LYS 370 1_555 L N07 JRF . B JRF 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.536 ? metalc ? metalc1 A OE2 GLU 648 A GLU 699 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc2 A OD1 ASP 652 A ASP 703 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc3 A OD2 ASP 652 A ASP 703 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc4 B OE1 GLU 573 B GLU 624 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc5 B OE2 GLU 573 B GLU 624 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc6 B OE2 GLU 573 B GLU 624 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc7 B OE1 GLU 616 B GLU 667 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc8 B OE2 GLU 619 B GLU 670 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc9 B OE1 GLU 619 B GLU 670 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc10 B OE2 GLU 648 B GLU 699 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc11 B OD1 ASP 652 B ASP 703 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc12 B OD2 ASP 652 B ASP 703 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 263 n n C1 O1 NAG sing 264 n n C1 O5 NAG sing 265 n n C1 H1 NAG sing 266 n n C2 C3 NAG sing 267 n n C2 N2 NAG sing 268 n n C2 H2 NAG sing 269 n n C3 C4 NAG sing 270 n n C3 O3 NAG sing 271 n n C3 H3 NAG sing 272 n n C4 C5 NAG sing 273 n n C4 O4 NAG sing 274 n n C4 H4 NAG sing 275 n n C5 C6 NAG sing 276 n n C5 O5 NAG sing 277 n n C5 H5 NAG sing 278 n n C6 O6 NAG sing 279 n n C6 H61 NAG sing 280 n n C6 H62 NAG sing 281 n n C7 C8 NAG sing 282 n n C7 N2 NAG sing 283 n n C7 O7 NAG doub 284 n n C8 H81 NAG sing 285 n n C8 H82 NAG sing 286 n n C8 H83 NAG sing 287 n n N2 HN2 NAG sing 288 n n O1 HO1 NAG sing 289 n n O3 HO3 NAG sing 290 n n O4 HO4 NAG sing 291 n n O6 HO6 NAG sing 292 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8SUN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 901 2362 NAG NAG . D 2 NAG A 1 902 2364 NAG NAG . E 2 NAG A 1 903 2365 NAG NAG . F 3 CA A 1 904 3 CA CA . G 2 NAG B 1 901 901 NAG NAG . H 2 NAG B 1 902 905 NAG NAG . I 2 NAG B 1 903 907 NAG NAG . J 3 CA B 1 904 1 CA CA . K 3 CA B 1 905 2 CA CA . L 4 JRF B 1 906 1 JRF LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 2 122.641 97.823 65.133 1 90.95 ? C1 NAG 903 A 1 HETATM 2 C C2 NAG . . . E 2 122.941 99.235 64.633 1 90.95 ? C2 NAG 903 A 1 HETATM 3 C C3 NAG . . . E 2 123.282 99.209 63.147 1 90.95 ? C3 NAG 903 A 1 HETATM 4 C C4 NAG . . . E 2 124.403 98.212 62.877 1 90.95 ? C4 NAG 903 A 1 HETATM 5 C C5 NAG . . . E 2 124.038 96.846 63.449 1 90.95 ? C5 NAG 903 A 1 HETATM 6 C C6 NAG . . . E 2 125.155 95.837 63.32 1 90.95 ? C6 NAG 903 A 1 HETATM 7 C C7 NAG . . . E 2 121.888 101.181 65.702 1 90.95 ? C7 NAG 903 A 1 HETATM 8 C C8 NAG . . . E 2 120.633 101.99 65.838 1 90.95 ? C8 NAG 903 A 1 HETATM 9 N N2 NAG . . . E 2 121.818 100.127 64.883 1 90.95 ? N2 NAG 903 A 1 HETATM 10 O O3 NAG . . . E 2 123.677 100.51 62.731 1 90.95 ? O3 NAG 903 A 1 HETATM 11 O O4 NAG . . . E 2 124.621 98.088 61.477 1 90.95 ? O4 NAG 903 A 1 HETATM 12 O O5 NAG . . . E 2 123.75 96.969 64.85 1 90.95 ? O5 NAG 903 A 1 HETATM 13 O O6 NAG . . . E 2 126.245 96.366 62.58 1 90.95 ? O6 NAG 903 A 1 HETATM 14 O O7 NAG . . . E 2 122.916 101.471 66.304 1 90.95 ? O7 NAG 903 A 1 HETATM 15 H H1 NAG . . . E 2 121.851 97.478 64.678 1 90.95 ? H1 NAG 903 A 1 HETATM 16 H H2 NAG . . . E 2 123.721 99.569 65.113 1 90.95 ? H2 NAG 903 A 1 HETATM 17 H H3 NAG . . . E 2 122.491 98.94 62.642 1 90.95 ? H3 NAG 903 A 1 HETATM 18 H H4 NAG . . . E 2 125.221 98.53 63.303 1 90.95 ? H4 NAG 903 A 1 HETATM 19 H H5 NAG . . . E 2 123.247 96.507 62.989 1 90.95 ? H5 NAG 903 A 1 HETATM 20 H H61 NAG . . . E 2 124.816 95.042 62.867 1 90.95 ? H61 NAG 903 A 1 HETATM 21 H H62 NAG . . . E 2 125.465 95.589 64.212 1 90.95 ? H62 NAG 903 A 1 HETATM 22 H H81 NAG . . . E 2 120.79 102.733 66.453 1 90.95 ? H81 NAG 903 A 1 HETATM 23 H H82 NAG . . . E 2 119.918 101.425 66.187 1 90.95 ? H82 NAG 903 A 1 HETATM 24 H H83 NAG . . . E 2 120.376 102.341 64.965 1 90.95 ? H83 NAG 903 A 1 HETATM 25 H HN2 NAG . . . E 2 121.028 99.961 64.46 1 90.95 ? HN2 NAG 903 A 1 HETATM 26 H HO3 NAG . . . E 2 124.292 100.825 63.287 1 90.95 ? HO3 NAG 903 A 1 HETATM 27 H HO4 NAG . . . E 2 124.335 97.294 61.201 1 90.95 ? HO4 NAG 903 A 1 HETATM 28 H HO6 NAG . . . E 2 126.055 96.341 61.713 1 90.95 ? HO6 NAG 903 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #