data_8SUN
#
_model_server_result.job_id            zdh6SgWdmt8tBgi9dZFPpA 
_model_server_result.datetime_utc      '2024-11-19 17:53:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sun 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":906}' 
#
_entry.id    8SUN 
#
_exptl.entry_id    8SUN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              277.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-Hydroxy-3-(trifluoromethyl)pyrido[1,2-a]benzimidazole-4-carbonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 280 A CYS 331 1_555 A SG CYS 321 A CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 287 A CYS 338 1_555 A SG CYS 314 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 298 A CYS 349 1_555 A SG CYS 756 A CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 301 A CYS 352 1_555 A SG CYS 305 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 A SG CYS 545 A CYS 596 1_555 A SG CYS 550 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 280 B CYS 331 1_555 B SG CYS 321 B CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf7 B SG CYS 287 B CYS 338 1_555 B SG CYS 314 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf8 B SG CYS 298 B CYS 349 1_555 B SG CYS 756 B CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 B SG CYS 301 B CYS 352 1_555 B SG CYS 305 B CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 B SG CYS 545 B CYS 596 1_555 B SG CYS 550 B CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A ND2 ASN 311 A ASN 362 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.244 ? 
covale ? covale2 B ND2 ASN 311 B ASN 362 1_555 G C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 B NZ LYS 319 B LYS 370 1_555 L N07 JRF . B JRF 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.536 ? 
metalc ? metalc1 A OE2 GLU 648 A GLU 699 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc2 A OD1 ASP 652 A ASP 703 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? 
metalc ? metalc3 A OD2 ASP 652 A ASP 703 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc4 B OE1 GLU 573 B GLU 624 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
metalc ? metalc5 B OE2 GLU 573 B GLU 624 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc6 B OE2 GLU 573 B GLU 624 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? 
metalc ? metalc7 B OE1 GLU 616 B GLU 667 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc8 B OE2 GLU 619 B GLU 670 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc9 B OE1 GLU 619 B GLU 670 1_555 K CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc10 B OE2 GLU 648 B GLU 699 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc11 B OD1 ASP 652 B ASP 703 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc12 B OD2 ASP 652 B ASP 703 1_555 J CA CA . B CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
#
_chem_comp.formula           'C13 H6 F3 N3 O' 
_chem_comp.formula_weight    277.201 
_chem_comp.id                JRF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-Hydroxy-3-(trifluoromethyl)pyrido[1,2-a]benzimidazole-4-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Hydroxy-3-trifluoromethyl-benzo[4,5]imidazo[1,2-a]pyridine-4-carbonitrile 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O04 C12 JRF sing 171 n n 
F03 C14 JRF sing 172 n n 
C15 C12 JRF doub 173 n y 
C15 C11 JRF sing 174 n y 
C12 N05 JRF sing 175 n y 
C16 C19 JRF doub 176 n y 
C16 C10 JRF sing 177 n y 
C14 C11 JRF sing 178 n n 
C14 F01 JRF sing 179 n n 
C14 F02 JRF sing 180 n n 
N05 C10 JRF sing 181 n y 
N05 C08 JRF sing 182 n y 
C11 C09 JRF doub 183 n y 
C19 C20 JRF sing 184 n y 
C10 C13 JRF doub 185 n y 
C08 C09 JRF sing 186 n y 
C08 N06 JRF doub 187 n y 
C09 C17 JRF sing 188 n n 
C20 C18 JRF doub 189 n y 
C13 N06 JRF sing 190 n y 
C13 C18 JRF sing 191 n y 
C17 N07 JRF trip 192 n n 
C15 H151 JRF sing 193 n n 
C16 H161 JRF sing 194 n n 
C18 H181 JRF sing 195 n n 
C19 H191 JRF sing 196 n n 
C20 H201 JRF sing 197 n n 
O04 H041 JRF sing 198 n n 
#
_atom_sites.entry_id                     8SUN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 901 2362 NAG NAG . 
D 2 NAG A 1 902 2364 NAG NAG . 
E 2 NAG A 1 903 2365 NAG NAG . 
F 3 CA A 1 904 3 CA CA . 
G 2 NAG B 1 901 901 NAG NAG . 
H 2 NAG B 1 902 905 NAG NAG . 
I 2 NAG B 1 903 907 NAG NAG . 
J 3 CA B 1 904 1 CA CA . 
K 3 CA B 1 905 2 CA CA . 
L 4 JRF B 1 906 1 JRF LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C08 JRF . . . L 4 78.38 118.821 92.573 1 20 ? C08 JRF 906 B 1 
HETATM 2 C C09 JRF . . . L 4 78.207 120.258 92.331 1 20 ? C09 JRF 906 B 1 
HETATM 3 C C10 JRF . . . L 4 78.474 116.976 93.803 1 20 ? C10 JRF 906 B 1 
HETATM 4 C C11 JRF . . . L 4 77.957 121.093 93.418 1 20 ? C11 JRF 906 B 1 
HETATM 5 C C12 JRF . . . L 4 78.027 119.197 94.894 1 20 ? C12 JRF 906 B 1 
HETATM 6 C C13 JRF . . . L 4 78.694 116.661 92.45 1 20 ? C13 JRF 906 B 1 
HETATM 7 C C14 JRF . . . L 4 77.78 122.576 93.213 1 20 ? C14 JRF 906 B 1 
HETATM 8 C C15 JRF . . . L 4 77.867 120.546 94.693 1 20 ? C15 JRF 906 B 1 
HETATM 9 C C16 JRF . . . L 4 78.488 115.969 94.757 1 20 ? C16 JRF 906 B 1 
HETATM 10 C C17 JRF . . . L 4 78.3 120.792 91.006 1 20 ? C17 JRF 906 B 1 
HETATM 11 C C18 JRF . . . L 4 78.925 115.33 92.083 1 20 ? C18 JRF 906 B 1 
HETATM 12 C C19 JRF . . . L 4 78.719 114.664 94.372 1 20 ? C19 JRF 906 B 1 
HETATM 13 C C20 JRF . . . L 4 78.935 114.353 93.037 1 20 ? C20 JRF 906 B 1 
HETATM 14 F F01 JRF . . . L 4 76.417 122.87 93.095 1 20 ? F01 JRF 906 B 1 
HETATM 15 F F02 JRF . . . L 4 78.444 122.967 92.046 1 20 ? F02 JRF 906 B 1 
HETATM 16 F F03 JRF . . . L 4 78.313 123.265 94.308 1 20 ? F03 JRF 906 B 1 
HETATM 17 N N05 JRF . . . L 4 78.279 118.346 93.858 1 20 ? N05 JRF 906 B 1 
HETATM 18 N N06 JRF . . . L 4 78.625 117.819 91.75 1 20 ? N06 JRF 906 B 1 
HETATM 19 N N07 JRF . . . L 4 78.373 121.215 89.955 1 20 ? N07 JRF 906 B 1 
HETATM 20 O O04 JRF . . . L 4 77.932 118.701 96.147 1 20 ? O04 JRF 906 B 1 
HETATM 21 H H151 JRF . . . L 4 77.672 121.196 95.544 1 20 ? H151 JRF 906 B 1 
HETATM 22 H H161 JRF . . . L 4 78.319 116.207 95.805 1 20 ? H161 JRF 906 B 1 
HETATM 23 H H181 JRF . . . L 4 79.096 115.074 91.039 1 20 ? H181 JRF 906 B 1 
HETATM 24 H H191 JRF . . . L 4 78.73 113.874 95.12 1 20 ? H191 JRF 906 B 1 
HETATM 25 H H201 JRF . . . L 4 79.116 113.32 92.748 1 20 ? H201 JRF 906 B 1 
HETATM 26 H H041 JRF . . . L 4 77.099 118.95 96.523 1 20 ? H041 JRF 906 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#