data_8SUR # _model_server_result.job_id DCfQkYub-aX3TYOtyUarAg _model_server_result.datetime_utc '2025-02-05 17:58:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1003}' # _entry.id 8SUR # _exptl.entry_id 8SUR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG 2 n D NAG 1 D 1 NAG D 1 NAG 2 n D NAG 2 D 2 NAG D 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 331 A CYS 331 1_555 A SG CYS 372 A CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 338 A CYS 338 1_555 A SG CYS 365 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 349 A CYS 349 1_555 A SG CYS 807 A CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? disulf ? disulf4 A SG CYS 352 A CYS 352 1_555 A SG CYS 356 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 596 A CYS 596 1_555 A SG CYS 601 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 331 B CYS 331 1_555 B SG CYS 372 B CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 338 B CYS 338 1_555 B SG CYS 365 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 349 B CYS 349 1_555 B SG CYS 807 B CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 B SG CYS 352 B CYS 352 1_555 B SG CYS 356 B CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 596 B CYS 596 1_555 B SG CYS 601 B CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 362 A ASN 362 1_555 G C1 NAG . A NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 778 A ASN 778 1_555 I C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 785 A ASN 785 1_555 H C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A OE1 GLU 395 A GLU 395 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? metalc ? metalc2 A OE1 GLU 624 A GLU 624 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc3 A OE2 GLU 624 A GLU 624 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc4 A OE1 GLU 667 A GLU 667 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc5 A OE2 GLU 667 A GLU 667 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc6 A OE2 GLU 670 A GLU 670 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc7 A OE2 GLU 699 A GLU 699 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 A OD2 ASP 703 A ASP 703 1_555 E CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc9 A O SER 854 A SER 854 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc10 A O ILE 857 A ILE 857 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc11 A OD2 ASP 859 A ASP 859 1_555 F CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc12 B OE2 GLU 395 B GLU 395 1_555 L CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc13 B OD1 ASN 621 B ASN 621 1_555 K CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc14 B OE1 GLU 624 B GLU 624 1_555 J CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? metalc ? metalc15 B OE2 GLU 667 B GLU 667 1_555 J CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? metalc ? metalc16 B OE2 GLU 670 B GLU 670 1_555 J CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc17 B OE1 GLU 670 B GLU 670 1_555 K CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc18 B OE2 GLU 699 B GLU 699 1_555 J CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc19 B OE1 GLU 699 B GLU 699 1_555 K CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc20 B OE2 GLU 699 B GLU 699 1_555 K CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc21 B OD1 ASP 703 B ASP 703 1_555 J CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc22 B O SER 854 B SER 854 1_555 L CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc23 B O ILE 857 B ILE 857 1_555 L CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc24 B OD1 ASP 859 B ASP 859 1_555 L CA CA . B CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8SUR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 1001 3 CA CA . F 3 CA A 1 1002 2 CA CA . G 4 NAG A 1 1003 2362 NAG NAG . H 4 NAG A 1 1004 2364 NAG NAG . I 4 NAG A 1 1005 2369 NAG NAG . J 3 CA B 1 1001 1 CA CA . K 3 CA B 1 1002 2 CA CA . L 3 CA B 1 1003 1 CA CA . M 5 VUT B 1 1004 2001 VUT NI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 140.686 99.32 68.854 1 65.16 ? C1 NAG 1003 A 1 HETATM 2 C C2 NAG . . . G 4 142.005 98.684 69.292 1 65.16 ? C2 NAG 1003 A 1 HETATM 3 C C3 NAG . . . G 4 143.147 99.178 68.409 1 65.16 ? C3 NAG 1003 A 1 HETATM 4 C C4 NAG . . . G 4 142.781 99.026 66.937 1 65.16 ? C4 NAG 1003 A 1 HETATM 5 C C5 NAG . . . G 4 141.381 99.509 66.557 1 65.16 ? C5 NAG 1003 A 1 HETATM 6 C C6 NAG . . . G 4 140.954 99.053 65.181 1 65.16 ? C6 NAG 1003 A 1 HETATM 7 C C7 NAG . . . G 4 142.875 98.098 71.51 1 65.16 ? C7 NAG 1003 A 1 HETATM 8 C C8 NAG . . . G 4 143.082 98.557 72.922 1 65.16 ? C8 NAG 1003 A 1 HETATM 9 N N2 NAG . . . G 4 142.281 98.971 70.69 1 65.16 ? N2 NAG 1003 A 1 HETATM 10 O O3 NAG . . . G 4 144.325 98.433 68.695 1 65.16 ? O3 NAG 1003 A 1 HETATM 11 O O4 NAG . . . G 4 143.816 98.925 65.962 1 65.16 ? O4 NAG 1003 A 1 HETATM 12 O O5 NAG . . . G 4 140.42 98.983 67.484 1 65.16 ? O5 NAG 1003 A 1 HETATM 13 O O6 NAG . . . G 4 139.765 98.278 65.242 1 65.16 ? O6 NAG 1003 A 1 HETATM 14 O O7 NAG . . . G 4 143.223 96.984 71.131 1 65.16 ? O7 NAG 1003 A 1 HETATM 15 H H1 NAG . . . G 4 140.769 100.29 68.923 1 65.16 ? H1 NAG 1003 A 1 HETATM 16 H H2 NAG . . . G 4 141.93 97.717 69.18 1 65.16 ? H2 NAG 1003 A 1 HETATM 17 H H3 NAG . . . G 4 143.313 100.121 68.603 1 65.16 ? H3 NAG 1003 A 1 HETATM 18 H H4 NAG . . . G 4 143.006 99.974 66.886 1 65.16 ? H4 NAG 1003 A 1 HETATM 19 H H5 NAG . . . G 4 141.355 100.484 66.589 1 65.16 ? H5 NAG 1003 A 1 HETATM 20 H H61 NAG . . . G 4 141.666 98.515 64.787 1 65.16 ? H61 NAG 1003 A 1 HETATM 21 H H62 NAG . . . G 4 140.798 99.836 64.619 1 65.16 ? H62 NAG 1003 A 1 HETATM 22 H H81 NAG . . . G 4 143.787 98.026 73.337 1 65.16 ? H81 NAG 1003 A 1 HETATM 23 H H82 NAG . . . G 4 142.252 98.444 73.423 1 65.16 ? H82 NAG 1003 A 1 HETATM 24 H H83 NAG . . . G 4 143.339 99.499 72.923 1 65.16 ? H83 NAG 1003 A 1 HETATM 25 H HN2 NAG . . . G 4 142.041 99.785 71.024 1 65.16 ? HN2 NAG 1003 A 1 HETATM 26 H HO3 NAG . . . G 4 144.133 97.777 69.261 1 65.16 ? HO3 NAG 1003 A 1 HETATM 27 H HO6 NAG . . . G 4 139.565 98.112 66.091 1 65.16 ? HO6 NAG 1003 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #