data_8SV2
#
_model_server_result.job_id            wDUhL-PTptYbM3qNEF8U2Q 
_model_server_result.datetime_utc      '2024-11-13 00:35:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8sv2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    8SV2 
#
_exptl.entry_id    8SV2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.197 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8SV2 
_cell.length_a            67.598 
_cell.length_b            66.401 
_cell.length_c            96.383 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8SV2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H14 N3 O8 P' 
_chem_comp.formula_weight    323.197 
_chem_comp.id                C5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P C5P sing 70 n n 
O3P HOP3 C5P sing 71 n n 
P O1P C5P doub 72 n n 
P O2P C5P sing 73 n n 
P O5' C5P sing 74 n n 
O2P HOP2 C5P sing 75 n n 
O5' C5' C5P sing 76 n n 
C5' C4' C5P sing 77 n n 
C5' "H5'1" C5P sing 78 n n 
C5' "H5'2" C5P sing 79 n n 
C4' O4' C5P sing 80 n n 
C4' C3' C5P sing 81 n n 
C4' H4' C5P sing 82 n n 
O4' C1' C5P sing 83 n n 
C3' O3' C5P sing 84 n n 
C3' C2' C5P sing 85 n n 
C3' H3' C5P sing 86 n n 
O3' HO3' C5P sing 87 n n 
C2' O2' C5P sing 88 n n 
C2' C1' C5P sing 89 n n 
C2' "H2'1" C5P sing 90 n n 
O2' HO2' C5P sing 91 n n 
C1' N1 C5P sing 92 n n 
C1' H1' C5P sing 93 n n 
N1 C2 C5P sing 94 n n 
N1 C6 C5P sing 95 n n 
C2 N3 C5P sing 96 n n 
C2 O2 C5P doub 97 n n 
N3 C4 C5P doub 98 n n 
C4 C5 C5P sing 99 n n 
C4 N4 C5P sing 100 n n 
C5 C6 C5P doub 101 n n 
C5 H5 C5P sing 102 n n 
C6 H6 C5P sing 103 n n 
N4 HN41 C5P sing 104 n n 
N4 HN42 C5P sing 105 n n 
#
_atom_sites.entry_id                     8SV2 
_atom_sites.fract_transf_matrix[1][1]    0.014793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01506 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010375 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 C5P A 1 501 501 C5P C5P . 
C 3 TRS A 1 502 502 TRS TRS . 
D 4 PGE A 1 503 503 PGE PGE . 
E 4 PGE A 1 504 504 PGE PGE . 
F 5 HOH A 1 601 165 HOH HOH . 
F 5 HOH A 2 602 147 HOH HOH . 
F 5 HOH A 3 603 148 HOH HOH . 
F 5 HOH A 4 604 233 HOH HOH . 
F 5 HOH A 5 605 219 HOH HOH . 
F 5 HOH A 6 606 203 HOH HOH . 
F 5 HOH A 7 607 114 HOH HOH . 
F 5 HOH A 8 608 232 HOH HOH . 
F 5 HOH A 9 609 128 HOH HOH . 
F 5 HOH A 10 610 23 HOH HOH . 
F 5 HOH A 11 611 11 HOH HOH . 
F 5 HOH A 12 612 204 HOH HOH . 
F 5 HOH A 13 613 206 HOH HOH . 
F 5 HOH A 14 614 133 HOH HOH . 
F 5 HOH A 15 615 95 HOH HOH . 
F 5 HOH A 16 616 122 HOH HOH . 
F 5 HOH A 17 617 97 HOH HOH . 
F 5 HOH A 18 618 154 HOH HOH . 
F 5 HOH A 19 619 30 HOH HOH . 
F 5 HOH A 20 620 75 HOH HOH . 
F 5 HOH A 21 621 222 HOH HOH . 
F 5 HOH A 22 622 168 HOH HOH . 
F 5 HOH A 23 623 130 HOH HOH . 
F 5 HOH A 24 624 50 HOH HOH . 
F 5 HOH A 25 625 150 HOH HOH . 
F 5 HOH A 26 626 49 HOH HOH . 
F 5 HOH A 27 627 39 HOH HOH . 
F 5 HOH A 28 628 158 HOH HOH . 
F 5 HOH A 29 629 210 HOH HOH . 
F 5 HOH A 30 630 141 HOH HOH . 
F 5 HOH A 31 631 32 HOH HOH . 
F 5 HOH A 32 632 144 HOH HOH . 
F 5 HOH A 33 633 120 HOH HOH . 
F 5 HOH A 34 634 96 HOH HOH . 
F 5 HOH A 35 635 205 HOH HOH . 
F 5 HOH A 36 636 175 HOH HOH . 
F 5 HOH A 37 637 102 HOH HOH . 
F 5 HOH A 38 638 25 HOH HOH . 
F 5 HOH A 39 639 52 HOH HOH . 
F 5 HOH A 40 640 126 HOH HOH . 
F 5 HOH A 41 641 14 HOH HOH . 
F 5 HOH A 42 642 157 HOH HOH . 
F 5 HOH A 43 643 86 HOH HOH . 
F 5 HOH A 44 644 7 HOH HOH . 
F 5 HOH A 45 645 18 HOH HOH . 
F 5 HOH A 46 646 31 HOH HOH . 
F 5 HOH A 47 647 134 HOH HOH . 
F 5 HOH A 48 648 242 HOH HOH . 
F 5 HOH A 49 649 81 HOH HOH . 
F 5 HOH A 50 650 181 HOH HOH . 
F 5 HOH A 51 651 55 HOH HOH . 
F 5 HOH A 52 652 4 HOH HOH . 
F 5 HOH A 53 653 24 HOH HOH . 
F 5 HOH A 54 654 127 HOH HOH . 
F 5 HOH A 55 655 12 HOH HOH . 
F 5 HOH A 56 656 47 HOH HOH . 
F 5 HOH A 57 657 87 HOH HOH . 
F 5 HOH A 58 658 74 HOH HOH . 
F 5 HOH A 59 659 244 HOH HOH . 
F 5 HOH A 60 660 1 HOH HOH . 
F 5 HOH A 61 661 105 HOH HOH . 
F 5 HOH A 62 662 48 HOH HOH . 
F 5 HOH A 63 663 21 HOH HOH . 
F 5 HOH A 64 664 218 HOH HOH . 
F 5 HOH A 65 665 35 HOH HOH . 
F 5 HOH A 66 666 43 HOH HOH . 
F 5 HOH A 67 667 101 HOH HOH . 
F 5 HOH A 68 668 92 HOH HOH . 
F 5 HOH A 69 669 19 HOH HOH . 
F 5 HOH A 70 670 83 HOH HOH . 
F 5 HOH A 71 671 217 HOH HOH . 
F 5 HOH A 72 672 146 HOH HOH . 
F 5 HOH A 73 673 80 HOH HOH . 
F 5 HOH A 74 674 3 HOH HOH . 
F 5 HOH A 75 675 172 HOH HOH . 
F 5 HOH A 76 676 6 HOH HOH . 
F 5 HOH A 77 677 5 HOH HOH . 
F 5 HOH A 78 678 93 HOH HOH . 
F 5 HOH A 79 679 136 HOH HOH . 
F 5 HOH A 80 680 215 HOH HOH . 
F 5 HOH A 81 681 173 HOH HOH . 
F 5 HOH A 82 682 20 HOH HOH . 
F 5 HOH A 83 683 34 HOH HOH . 
F 5 HOH A 84 684 57 HOH HOH . 
F 5 HOH A 85 685 56 HOH HOH . 
F 5 HOH A 86 686 200 HOH HOH . 
F 5 HOH A 87 687 38 HOH HOH . 
F 5 HOH A 88 688 51 HOH HOH . 
F 5 HOH A 89 689 145 HOH HOH . 
F 5 HOH A 90 690 159 HOH HOH . 
F 5 HOH A 91 691 223 HOH HOH . 
F 5 HOH A 92 692 68 HOH HOH . 
F 5 HOH A 93 693 229 HOH HOH . 
F 5 HOH A 94 694 69 HOH HOH . 
F 5 HOH A 95 695 211 HOH HOH . 
F 5 HOH A 96 696 98 HOH HOH . 
F 5 HOH A 97 697 60 HOH HOH . 
F 5 HOH A 98 698 216 HOH HOH . 
F 5 HOH A 99 699 63 HOH HOH . 
F 5 HOH A 100 700 171 HOH HOH . 
F 5 HOH A 101 701 88 HOH HOH . 
F 5 HOH A 102 702 79 HOH HOH . 
F 5 HOH A 103 703 17 HOH HOH . 
F 5 HOH A 104 704 201 HOH HOH . 
F 5 HOH A 105 705 40 HOH HOH . 
F 5 HOH A 106 706 237 HOH HOH . 
F 5 HOH A 107 707 2 HOH HOH . 
F 5 HOH A 108 708 192 HOH HOH . 
F 5 HOH A 109 709 54 HOH HOH . 
F 5 HOH A 110 710 45 HOH HOH . 
F 5 HOH A 111 711 9 HOH HOH . 
F 5 HOH A 112 712 189 HOH HOH . 
F 5 HOH A 113 713 61 HOH HOH . 
F 5 HOH A 114 714 82 HOH HOH . 
F 5 HOH A 115 715 67 HOH HOH . 
F 5 HOH A 116 716 100 HOH HOH . 
F 5 HOH A 117 717 28 HOH HOH . 
F 5 HOH A 118 718 22 HOH HOH . 
F 5 HOH A 119 719 239 HOH HOH . 
F 5 HOH A 120 720 8 HOH HOH . 
F 5 HOH A 121 721 125 HOH HOH . 
F 5 HOH A 122 722 37 HOH HOH . 
F 5 HOH A 123 723 26 HOH HOH . 
F 5 HOH A 124 724 151 HOH HOH . 
F 5 HOH A 125 725 121 HOH HOH . 
F 5 HOH A 126 726 118 HOH HOH . 
F 5 HOH A 127 727 41 HOH HOH . 
F 5 HOH A 128 728 15 HOH HOH . 
F 5 HOH A 129 729 152 HOH HOH . 
F 5 HOH A 130 730 104 HOH HOH . 
F 5 HOH A 131 731 140 HOH HOH . 
F 5 HOH A 132 732 33 HOH HOH . 
F 5 HOH A 133 733 27 HOH HOH . 
F 5 HOH A 134 734 155 HOH HOH . 
F 5 HOH A 135 735 103 HOH HOH . 
F 5 HOH A 136 736 36 HOH HOH . 
F 5 HOH A 137 737 70 HOH HOH . 
F 5 HOH A 138 738 66 HOH HOH . 
F 5 HOH A 139 739 182 HOH HOH . 
F 5 HOH A 140 740 170 HOH HOH . 
F 5 HOH A 141 741 10 HOH HOH . 
F 5 HOH A 142 742 110 HOH HOH . 
F 5 HOH A 143 743 59 HOH HOH . 
F 5 HOH A 144 744 112 HOH HOH . 
F 5 HOH A 145 745 123 HOH HOH . 
F 5 HOH A 146 746 132 HOH HOH . 
F 5 HOH A 147 747 234 HOH HOH . 
F 5 HOH A 148 748 142 HOH HOH . 
F 5 HOH A 149 749 153 HOH HOH . 
F 5 HOH A 150 750 65 HOH HOH . 
F 5 HOH A 151 751 111 HOH HOH . 
F 5 HOH A 152 752 91 HOH HOH . 
F 5 HOH A 153 753 164 HOH HOH . 
F 5 HOH A 154 754 117 HOH HOH . 
F 5 HOH A 155 755 202 HOH HOH . 
F 5 HOH A 156 756 72 HOH HOH . 
F 5 HOH A 157 757 139 HOH HOH . 
F 5 HOH A 158 758 94 HOH HOH . 
F 5 HOH A 159 759 208 HOH HOH . 
F 5 HOH A 160 760 89 HOH HOH . 
F 5 HOH A 161 761 77 HOH HOH . 
F 5 HOH A 162 762 107 HOH HOH . 
F 5 HOH A 163 763 85 HOH HOH . 
F 5 HOH A 164 764 90 HOH HOH . 
F 5 HOH A 165 765 195 HOH HOH . 
F 5 HOH A 166 766 113 HOH HOH . 
F 5 HOH A 167 767 240 HOH HOH . 
F 5 HOH A 168 768 106 HOH HOH . 
F 5 HOH A 169 769 198 HOH HOH . 
F 5 HOH A 170 770 16 HOH HOH . 
F 5 HOH A 171 771 213 HOH HOH . 
F 5 HOH A 172 772 149 HOH HOH . 
F 5 HOH A 173 773 62 HOH HOH . 
F 5 HOH A 174 774 214 HOH HOH . 
F 5 HOH A 175 775 190 HOH HOH . 
F 5 HOH A 176 776 194 HOH HOH . 
F 5 HOH A 177 777 161 HOH HOH . 
F 5 HOH A 178 778 197 HOH HOH . 
F 5 HOH A 179 779 46 HOH HOH . 
F 5 HOH A 180 780 73 HOH HOH . 
F 5 HOH A 181 781 163 HOH HOH . 
F 5 HOH A 182 782 185 HOH HOH . 
F 5 HOH A 183 783 58 HOH HOH . 
F 5 HOH A 184 784 138 HOH HOH . 
F 5 HOH A 185 785 135 HOH HOH . 
F 5 HOH A 186 786 129 HOH HOH . 
F 5 HOH A 187 787 226 HOH HOH . 
F 5 HOH A 188 788 115 HOH HOH . 
F 5 HOH A 189 789 243 HOH HOH . 
F 5 HOH A 190 790 137 HOH HOH . 
F 5 HOH A 191 791 143 HOH HOH . 
F 5 HOH A 192 792 230 HOH HOH . 
F 5 HOH A 193 793 177 HOH HOH . 
F 5 HOH A 194 794 160 HOH HOH . 
F 5 HOH A 195 795 184 HOH HOH . 
F 5 HOH A 196 796 212 HOH HOH . 
F 5 HOH A 197 797 220 HOH HOH . 
F 5 HOH A 198 798 238 HOH HOH . 
F 5 HOH A 199 799 231 HOH HOH . 
F 5 HOH A 200 800 193 HOH HOH . 
F 5 HOH A 201 801 167 HOH HOH . 
F 5 HOH A 202 802 178 HOH HOH . 
F 5 HOH A 203 803 241 HOH HOH . 
F 5 HOH A 204 804 119 HOH HOH . 
F 5 HOH A 205 805 99 HOH HOH . 
F 5 HOH A 206 806 124 HOH HOH . 
F 5 HOH A 207 807 76 HOH HOH . 
F 5 HOH A 208 808 228 HOH HOH . 
F 5 HOH A 209 809 191 HOH HOH . 
F 5 HOH A 210 810 196 HOH HOH . 
F 5 HOH A 211 811 84 HOH HOH . 
F 5 HOH A 212 812 64 HOH HOH . 
F 5 HOH A 213 813 176 HOH HOH . 
F 5 HOH A 214 814 180 HOH HOH . 
F 5 HOH A 215 815 207 HOH HOH . 
F 5 HOH A 216 816 186 HOH HOH . 
F 5 HOH A 217 817 183 HOH HOH . 
F 5 HOH A 218 818 156 HOH HOH . 
F 5 HOH A 219 819 209 HOH HOH . 
F 5 HOH A 220 820 187 HOH HOH . 
F 5 HOH A 221 821 131 HOH HOH . 
F 5 HOH A 222 822 199 HOH HOH . 
F 5 HOH A 223 823 13 HOH HOH . 
F 5 HOH A 224 824 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P C5P . . . B 2 -20.611 20.465 -7.935 1 34.29 ? O3P C5P 501 A 1 
HETATM 2 P P C5P . . . B 2 -19.907 19.035 -8.152 1 53.75 ? P C5P 501 A 1 
HETATM 3 O O1P C5P . . . B 2 -18.996 19.107 -9.477 1 41.02 ? O1P C5P 501 A 1 
HETATM 4 O O2P C5P . . . B 2 -19.277 18.643 -6.871 1 43.52 ? O2P C5P 501 A 1 
HETATM 5 O O5' C5P . . . B 2 -21.041 17.965 -8.482 1 36.99 ? O5' C5P 501 A 1 
HETATM 6 C C5' C5P . . . B 2 -20.953 16.617 -8.035 1 37.23 ? C5' C5P 501 A 1 
HETATM 7 C C4' C5P . . . B 2 -22.237 15.88 -8.322 1 34.87 ? C4' C5P 501 A 1 
HETATM 8 O O4' C5P . . . B 2 -23.208 16.419 -7.413 1 33.58 ? O4' C5P 501 A 1 
HETATM 9 C C3' C5P . . . B 2 -22.805 16.265 -9.667 1 30.19 ? C3' C5P 501 A 1 
HETATM 10 O O3' C5P . . . B 2 -22.271 15.424 -10.677 1 35.83 ? O3' C5P 501 A 1 
HETATM 11 C C2' C5P . . . B 2 -24.289 16.001 -9.475 1 28.4 ? C2' C5P 501 A 1 
HETATM 12 O O2' C5P . . . B 2 -24.506 14.6 -9.543 1 37.86 ? O2' C5P 501 A 1 
HETATM 13 C C1' C5P . . . B 2 -24.48 16.39 -8.009 1 30.49 ? C1' C5P 501 A 1 
HETATM 14 N N1 C5P . . . B 2 -25.027 17.767 -7.91 1 33.05 ? N1 C5P 501 A 1 
HETATM 15 C C2 C5P . . . B 2 -26.405 17.934 -8.052 1 30.5 ? C2 C5P 501 A 1 
HETATM 16 N N3 C5P . . . B 2 -26.932 19.185 -7.949 1 28.12 ? N3 C5P 501 A 1 
HETATM 17 C C4 C5P . . . B 2 -26.142 20.242 -7.709 1 32.11 ? C4 C5P 501 A 1 
HETATM 18 C C5 C5P . . . B 2 -24.73 20.097 -7.556 1 31.67 ? C5 C5P 501 A 1 
HETATM 19 C C6 C5P . . . B 2 -24.22 18.852 -7.661 1 33.87 ? C6 C5P 501 A 1 
HETATM 20 O O2 C5P . . . B 2 -27.102 16.943 -8.271 1 32.27 ? O2 C5P 501 A 1 
HETATM 21 N N4 C5P . . . B 2 -26.714 21.445 -7.618 1 30.8 ? N4 C5P 501 A 1 
#
_model_server_stats.io_time_ms              84 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           21 
#