data_8SV4 # _model_server_result.job_id NhhLJtSvwySuXvJ67NWRCg _model_server_result.datetime_utc '2024-11-14 20:40:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8SV4 # _exptl.entry_id 8SV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-(2-ethoxyethoxy)ethoxy]ethanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8SV4 _cell.length_a 92.539 _cell.length_b 92.539 _cell.length_c 78.896 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O13 B86 1 B B86 1 1_555 B P 7GU 2 B 7GU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale2 B O3' 7GU 2 B 7GU 2 1_555 B P C37 3 B C37 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? covale ? covale3 B O3' C37 3 B C37 3 1_555 B P 7GU 4 B 7GU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? covale ? covale4 B O3' 7GU 4 B 7GU 4 1_555 B P 7DA 5 B 7DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? covale ? covale5 B O3' 7DA 5 B 7DA 5 1_555 B P 7DA 6 B 7DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.574 ? covale ? covale6 B O3' 7DA 6 B 7DA 6 1_555 B P UCL 7 B UCL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? covale ? covale7 B O3' UCL 7 B UCL 7 1_555 B P UCL 8 B UCL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? covale ? covale8 B O3' UCL 8 B UCL 8 1_555 B P C37 9 B C37 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale9 B O3' C37 9 B C37 9 1_555 B P 7GU 10 B 7GU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale10 B O3' 7GU 10 B 7GU 10 1_555 B P C37 11 B C37 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale11 B O3' C37 11 B C37 11 1_555 B P 7GU 12 B 7GU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? covale ? covale12 C O13 B86 1 C B86 1 1_555 C P 7GU 2 C 7GU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale13 C O3' 7GU 2 C 7GU 2 1_555 C P C37 3 C C37 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale14 C O3' C37 3 C C37 3 1_555 C P 7GU 4 C 7GU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? covale ? covale15 C O3' 7GU 4 C 7GU 4 1_555 C P 7DA 5 C 7DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale16 C O3' 7DA 5 C 7DA 5 1_555 C P 7DA 6 C 7DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale17 C O3' 7DA 6 C 7DA 6 1_555 C P UCL 7 C UCL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? covale ? covale18 C O3' UCL 7 C UCL 7 1_555 C P UCL 8 C UCL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? covale ? covale19 C O3' UCL 8 C UCL 8 1_555 C P C37 9 C C37 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale20 C O3' C37 9 C C37 9 1_555 C P 7GU 10 C 7GU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.589 ? covale ? covale21 C O3' 7GU 10 C 7GU 10 1_555 C P C37 11 C C37 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale22 C O3' C37 11 C C37 11 1_555 C P 7GU 12 C 7GU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? hydrog WATSON-CRICK hydrog1 B N1 7GU 2 B 7GU 2 1_555 C N3 C37 11 C C37 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 7GU 2 B 7GU 2 1_555 C O2 C37 11 C C37 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 7GU 2 B 7GU 2 1_555 C N4 C37 11 C C37 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 C37 3 B C37 3 1_555 C N1 7GU 10 C 7GU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 C37 3 B C37 3 1_555 C O6 7GU 10 C 7GU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 C37 3 B C37 3 1_555 C N2 7GU 10 C 7GU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 7GU 4 B 7GU 4 1_555 C N3 C37 9 C C37 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 7GU 4 B 7GU 4 1_555 C O2 C37 9 C C37 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 7GU 4 B 7GU 4 1_555 C N4 C37 9 C C37 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 7DA 5 B 7DA 5 1_555 C N3 UCL 8 C UCL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N6 7DA 5 B 7DA 5 1_555 C O4 UCL 8 C UCL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 7DA 6 B 7DA 6 1_555 C N3 UCL 7 C UCL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 7DA 6 B 7DA 6 1_555 C O4 UCL 7 C UCL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 UCL 7 B UCL 7 1_555 C N1 7DA 6 C 7DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 UCL 7 B UCL 7 1_555 C N6 7DA 6 C 7DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 UCL 8 B UCL 8 1_555 C N1 7DA 5 C 7DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O4 UCL 8 B UCL 8 1_555 C N6 7DA 5 C 7DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 C37 9 B C37 9 1_555 C N1 7GU 4 C 7GU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 C37 9 B C37 9 1_555 C O6 7GU 4 C 7GU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 C37 9 B C37 9 1_555 C N2 7GU 4 C 7GU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 7GU 10 B 7GU 10 1_555 C N3 C37 3 C C37 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N2 7GU 10 B 7GU 10 1_555 C O2 C37 3 C C37 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O6 7GU 10 B 7GU 10 1_555 C N4 C37 3 C C37 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N3 C37 11 B C37 11 1_555 C N1 7GU 2 C 7GU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N4 C37 11 B C37 11 1_555 C O6 7GU 2 C 7GU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O2 C37 11 B C37 11 1_555 C N2 7GU 2 C 7GU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C8 H18 O4' _chem_comp.formula_weight 178.226 _chem_comp.id FWN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-(2-ethoxyethoxy)ethoxy]ethanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 O10 FWN sing 229 n n C9 C8 FWN sing 230 n n O10 C11 FWN sing 231 n n C11 C12 FWN sing 232 n n C8 O7 FWN sing 233 n n O7 C6 FWN sing 234 n n O13 C12 FWN sing 235 n n O13 C14 FWN sing 236 n n C6 C5 FWN sing 237 n n C1 C14 FWN sing 238 n n C5 O4 FWN sing 239 n n O4 H1 FWN sing 240 n n C5 H2 FWN sing 241 n n C5 H3 FWN sing 242 n n C6 H4 FWN sing 243 n n C6 H5 FWN sing 244 n n C8 H6 FWN sing 245 n n C8 H7 FWN sing 246 n n C9 H8 FWN sing 247 n n C9 H9 FWN sing 248 n n C11 H10 FWN sing 249 n n C11 H11 FWN sing 250 n n C12 H12 FWN sing 251 n n C12 H13 FWN sing 252 n n C14 H14 FWN sing 253 n n C14 H15 FWN sing 254 n n C1 H16 FWN sing 255 n n C1 H17 FWN sing 256 n n C1 H18 FWN sing 257 n n # _atom_sites.entry_id 8SV4 _atom_sites.fract_transf_matrix[1][1] 0.010806 _atom_sites.fract_transf_matrix[1][2] 0.006239 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 FWN A 1 201 87 FWN PE5 . E 4 ACT A 1 202 88 ACT ACT . F 4 ACT A 1 203 89 ACT ACT . G 5 SO4 A 1 204 90 SO4 SO4 . H 5 SO4 A 1 205 91 SO4 SO4 . I 6 EDO A 1 206 92 EDO EDO . J 7 HOH A 1 301 45 HOH HOH . J 7 HOH A 2 302 32 HOH HOH . J 7 HOH A 3 303 47 HOH HOH . J 7 HOH A 4 304 48 HOH HOH . J 7 HOH A 5 305 31 HOH HOH . J 7 HOH A 6 306 73 HOH HOH . J 7 HOH A 7 307 13 HOH HOH . J 7 HOH A 8 308 9 HOH HOH . J 7 HOH A 9 309 2 HOH HOH . J 7 HOH A 10 310 38 HOH HOH . J 7 HOH A 11 311 46 HOH HOH . J 7 HOH A 12 312 26 HOH HOH . J 7 HOH A 13 313 81 HOH HOH . J 7 HOH A 14 314 85 HOH HOH . J 7 HOH A 15 315 40 HOH HOH . J 7 HOH A 16 316 8 HOH HOH . J 7 HOH A 17 317 52 HOH HOH . J 7 HOH A 18 318 37 HOH HOH . J 7 HOH A 19 319 57 HOH HOH . J 7 HOH A 20 320 39 HOH HOH . J 7 HOH A 21 321 83 HOH HOH . J 7 HOH A 22 322 25 HOH HOH . J 7 HOH A 23 323 7 HOH HOH . J 7 HOH A 24 324 4 HOH HOH . J 7 HOH A 25 325 22 HOH HOH . J 7 HOH A 26 326 54 HOH HOH . J 7 HOH A 27 327 6 HOH HOH . J 7 HOH A 28 328 35 HOH HOH . J 7 HOH A 29 329 36 HOH HOH . J 7 HOH A 30 330 18 HOH HOH . J 7 HOH A 31 331 60 HOH HOH . J 7 HOH A 32 332 27 HOH HOH . J 7 HOH A 33 333 53 HOH HOH . J 7 HOH A 34 334 84 HOH HOH . J 7 HOH A 35 335 15 HOH HOH . J 7 HOH A 36 336 30 HOH HOH . J 7 HOH A 37 337 55 HOH HOH . J 7 HOH A 38 338 63 HOH HOH . J 7 HOH A 39 339 16 HOH HOH . J 7 HOH A 40 340 12 HOH HOH . J 7 HOH A 41 341 43 HOH HOH . J 7 HOH A 42 342 59 HOH HOH . J 7 HOH A 43 343 5 HOH HOH . J 7 HOH A 44 344 56 HOH HOH . J 7 HOH A 45 345 44 HOH HOH . J 7 HOH A 46 346 21 HOH HOH . J 7 HOH A 47 347 28 HOH HOH . J 7 HOH A 48 348 20 HOH HOH . J 7 HOH A 49 349 3 HOH HOH . J 7 HOH A 50 350 72 HOH HOH . J 7 HOH A 51 351 61 HOH HOH . J 7 HOH A 52 352 29 HOH HOH . J 7 HOH A 53 353 78 HOH HOH . J 7 HOH A 54 354 58 HOH HOH . J 7 HOH A 55 355 19 HOH HOH . J 7 HOH A 56 356 86 HOH HOH . J 7 HOH A 57 357 41 HOH HOH . J 7 HOH A 58 358 42 HOH HOH . J 7 HOH A 59 359 82 HOH HOH . J 7 HOH A 60 360 34 HOH HOH . K 7 HOH B 1 101 80 HOH HOH . K 7 HOH B 2 102 51 HOH HOH . K 7 HOH B 3 103 69 HOH HOH . K 7 HOH B 4 104 77 HOH HOH . K 7 HOH B 5 105 79 HOH HOH . K 7 HOH B 6 106 33 HOH HOH . K 7 HOH B 7 107 76 HOH HOH . K 7 HOH B 8 108 75 HOH HOH . L 7 HOH C 1 101 62 HOH HOH . L 7 HOH C 2 102 70 HOH HOH . L 7 HOH C 3 103 24 HOH HOH . L 7 HOH C 4 104 71 HOH HOH . L 7 HOH C 5 105 66 HOH HOH . L 7 HOH C 6 106 65 HOH HOH . L 7 HOH C 7 107 74 HOH HOH . L 7 HOH C 8 108 67 HOH HOH . L 7 HOH C 9 109 68 HOH HOH . L 7 HOH C 10 110 64 HOH HOH . L 7 HOH C 11 111 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 FWN . . . D 3 40.78 -33.531 0.895 1 72.44 ? O4 FWN 201 A 1 HETATM 2 C C5 FWN . . . D 3 41.621 -33.345 -0.261 1 84.66 ? C5 FWN 201 A 1 HETATM 3 C C6 FWN . . . D 3 41.909 -34.662 -0.988 1 81.46 ? C6 FWN 201 A 1 HETATM 4 O O7 FWN . . . D 3 42.968 -34.446 -1.95 1 84.97 ? O7 FWN 201 A 1 HETATM 5 C C8 FWN . . . D 3 42.521 -33.761 -3.143 1 91.8 ? C8 FWN 201 A 1 HETATM 6 C C9 FWN . . . D 3 43.391 -34.169 -4.343 1 92.67 ? C9 FWN 201 A 1 HETATM 7 O O10 FWN . . . D 3 42.88 -33.606 -5.58 1 98.22 ? O10 FWN 201 A 1 HETATM 8 C C11 FWN . . . D 3 43.691 -33.975 -6.734 1 93.9 ? C11 FWN 201 A 1 HETATM 9 C C12 FWN . . . D 3 42.923 -34.896 -7.699 1 92.18 ? C12 FWN 201 A 1 HETATM 10 O O13 FWN . . . D 3 43.848 -35.721 -8.447 1 91.37 ? O13 FWN 201 A 1 HETATM 11 C C14 FWN . . . D 3 43.178 -36.672 -9.319 1 87.05 ? C14 FWN 201 A 1 HETATM 12 C C1 FWN . . . D 3 43.364 -38.112 -8.809 1 77.11 ? C1 FWN 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #