data_8SV5 # _model_server_result.job_id IYLvrS8H1pkNnPRUCt5gCQ _model_server_result.datetime_utc '2024-12-18 12:44:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8sv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":202}' # _entry.id 8SV5 # _exptl.entry_id 8SV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.179 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.17 _cell.angle_gamma 90 _cell.entry_id 8SV5 _cell.length_a 63.421 _cell.length_b 101.849 _cell.length_c 77.204 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # _chem_comp.formula 'C7 H9 N5 O2' _chem_comp.formula_weight 195.179 _chem_comp.id PH2 _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PH2 doub 246 n n N1 C9 PH2 sing 247 n n C2 C3 PH2 sing 248 n n C2 C11 PH2 sing 249 n n C3 N4 PH2 sing 250 n n C3 H31 PH2 sing 251 n n C3 H32 PH2 sing 252 n n N4 C10 PH2 sing 253 n n N4 HN4 PH2 sing 254 n n N5 C6 PH2 doub 255 n y N5 C10 PH2 sing 256 n y C6 N6 PH2 sing 257 n n C6 N7 PH2 sing 258 n y N6 HN61 PH2 sing 259 n n N6 HN62 PH2 sing 260 n n N7 C8 PH2 sing 261 n y N7 HN7 PH2 sing 262 n n C8 O8 PH2 doub 263 n n C8 C9 PH2 sing 264 n y C9 C10 PH2 doub 265 n y C11 O4 PH2 sing 266 n n C11 H111 PH2 sing 267 n n C11 H112 PH2 sing 268 n n O4 HO4 PH2 sing 269 n n # _atom_sites.entry_id 8SV5 _atom_sites.fract_transf_matrix[1][1] 0.015768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003113 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 PH2 A 1 201 201 PH2 PH2 . J 2 PH2 B 1 201 201 PH2 PH2 . K 3 EDO B 1 202 301 EDO EDO . L 2 PH2 C 1 201 201 PH2 PH2 . M 2 PH2 D 1 201 201 PH2 PH2 . N 2 PH2 D 1 202 201 PH2 PH2 . O 2 PH2 E 1 201 201 PH2 PH2 . P 2 PH2 G 1 201 201 PH2 PH2 . Q 2 PH2 H 1 201 201 PH2 PH2 . R 3 EDO H 1 202 301 EDO EDO . S 4 HOH A 1 301 104 HOH HOH . S 4 HOH A 2 302 18 HOH HOH . S 4 HOH A 3 303 129 HOH HOH . S 4 HOH A 4 304 26 HOH HOH . S 4 HOH A 5 305 37 HOH HOH . S 4 HOH A 6 306 1 HOH HOH . S 4 HOH A 7 307 91 HOH HOH . S 4 HOH A 8 308 7 HOH HOH . S 4 HOH A 9 309 58 HOH HOH . S 4 HOH A 10 310 2 HOH HOH . S 4 HOH A 11 311 122 HOH HOH . S 4 HOH A 12 312 54 HOH HOH . S 4 HOH A 13 313 103 HOH HOH . S 4 HOH A 14 314 165 HOH HOH . S 4 HOH A 15 315 8 HOH HOH . S 4 HOH A 16 316 68 HOH HOH . S 4 HOH A 17 317 167 HOH HOH . S 4 HOH A 18 318 63 HOH HOH . S 4 HOH A 19 319 178 HOH HOH . S 4 HOH A 20 320 179 HOH HOH . S 4 HOH A 21 321 144 HOH HOH . S 4 HOH A 22 322 180 HOH HOH . S 4 HOH A 23 323 75 HOH HOH . T 4 HOH B 1 301 66 HOH HOH . T 4 HOH B 2 302 146 HOH HOH . T 4 HOH B 3 303 20 HOH HOH . T 4 HOH B 4 304 57 HOH HOH . T 4 HOH B 5 305 59 HOH HOH . T 4 HOH B 6 306 141 HOH HOH . T 4 HOH B 7 307 47 HOH HOH . T 4 HOH B 8 308 176 HOH HOH . T 4 HOH B 9 309 108 HOH HOH . T 4 HOH B 10 310 12 HOH HOH . T 4 HOH B 11 311 52 HOH HOH . T 4 HOH B 12 312 116 HOH HOH . T 4 HOH B 13 313 152 HOH HOH . T 4 HOH B 14 314 111 HOH HOH . T 4 HOH B 15 315 125 HOH HOH . T 4 HOH B 16 316 39 HOH HOH . T 4 HOH B 17 317 142 HOH HOH . T 4 HOH B 18 318 175 HOH HOH . T 4 HOH B 19 319 137 HOH HOH . T 4 HOH B 20 320 117 HOH HOH . T 4 HOH B 21 321 126 HOH HOH . T 4 HOH B 22 322 84 HOH HOH . T 4 HOH B 23 323 53 HOH HOH . T 4 HOH B 24 324 139 HOH HOH . T 4 HOH B 25 325 171 HOH HOH . T 4 HOH B 26 326 124 HOH HOH . U 4 HOH C 1 301 147 HOH HOH . U 4 HOH C 2 302 95 HOH HOH . U 4 HOH C 3 303 109 HOH HOH . U 4 HOH C 4 304 15 HOH HOH . U 4 HOH C 5 305 23 HOH HOH . U 4 HOH C 6 306 40 HOH HOH . U 4 HOH C 7 307 145 HOH HOH . U 4 HOH C 8 308 17 HOH HOH . U 4 HOH C 9 309 38 HOH HOH . U 4 HOH C 10 310 87 HOH HOH . U 4 HOH C 11 311 88 HOH HOH . U 4 HOH C 12 312 131 HOH HOH . U 4 HOH C 13 313 174 HOH HOH . U 4 HOH C 14 314 32 HOH HOH . U 4 HOH C 15 315 181 HOH HOH . U 4 HOH C 16 316 112 HOH HOH . U 4 HOH C 17 317 159 HOH HOH . U 4 HOH C 18 318 157 HOH HOH . U 4 HOH C 19 319 85 HOH HOH . V 4 HOH D 1 301 71 HOH HOH . V 4 HOH D 2 302 93 HOH HOH . V 4 HOH D 3 303 96 HOH HOH . V 4 HOH D 4 304 182 HOH HOH . V 4 HOH D 5 305 41 HOH HOH . V 4 HOH D 6 306 64 HOH HOH . V 4 HOH D 7 307 16 HOH HOH . V 4 HOH D 8 308 28 HOH HOH . V 4 HOH D 9 309 151 HOH HOH . V 4 HOH D 10 310 90 HOH HOH . V 4 HOH D 11 311 3 HOH HOH . V 4 HOH D 12 312 72 HOH HOH . V 4 HOH D 13 313 50 HOH HOH . V 4 HOH D 14 314 65 HOH HOH . V 4 HOH D 15 315 97 HOH HOH . V 4 HOH D 16 316 78 HOH HOH . V 4 HOH D 17 317 73 HOH HOH . V 4 HOH D 18 318 172 HOH HOH . V 4 HOH D 19 319 170 HOH HOH . V 4 HOH D 20 320 136 HOH HOH . V 4 HOH D 21 321 135 HOH HOH . W 4 HOH E 1 301 82 HOH HOH . W 4 HOH E 2 302 31 HOH HOH . W 4 HOH E 3 303 21 HOH HOH . W 4 HOH E 4 304 33 HOH HOH . W 4 HOH E 5 305 42 HOH HOH . W 4 HOH E 6 306 60 HOH HOH . W 4 HOH E 7 307 140 HOH HOH . W 4 HOH E 8 308 106 HOH HOH . W 4 HOH E 9 309 24 HOH HOH . W 4 HOH E 10 310 130 HOH HOH . W 4 HOH E 11 311 25 HOH HOH . W 4 HOH E 12 312 94 HOH HOH . W 4 HOH E 13 313 43 HOH HOH . W 4 HOH E 14 314 35 HOH HOH . W 4 HOH E 15 315 133 HOH HOH . W 4 HOH E 16 316 79 HOH HOH . W 4 HOH E 17 317 62 HOH HOH . W 4 HOH E 18 318 123 HOH HOH . W 4 HOH E 19 319 121 HOH HOH . W 4 HOH E 20 320 148 HOH HOH . W 4 HOH E 21 321 168 HOH HOH . W 4 HOH E 22 322 81 HOH HOH . W 4 HOH E 23 323 105 HOH HOH . W 4 HOH E 24 324 154 HOH HOH . W 4 HOH E 25 325 177 HOH HOH . W 4 HOH E 26 326 143 HOH HOH . W 4 HOH E 27 327 138 HOH HOH . W 4 HOH E 28 328 153 HOH HOH . W 4 HOH E 29 329 163 HOH HOH . X 4 HOH F 1 201 74 HOH HOH . X 4 HOH F 2 202 156 HOH HOH . X 4 HOH F 3 203 22 HOH HOH . X 4 HOH F 4 204 5 HOH HOH . X 4 HOH F 5 205 9 HOH HOH . X 4 HOH F 6 206 34 HOH HOH . X 4 HOH F 7 207 11 HOH HOH . X 4 HOH F 8 208 14 HOH HOH . X 4 HOH F 9 209 160 HOH HOH . X 4 HOH F 10 210 48 HOH HOH . X 4 HOH F 11 211 102 HOH HOH . X 4 HOH F 12 212 45 HOH HOH . X 4 HOH F 13 213 61 HOH HOH . X 4 HOH F 14 214 128 HOH HOH . X 4 HOH F 15 215 161 HOH HOH . X 4 HOH F 16 216 164 HOH HOH . X 4 HOH F 17 217 77 HOH HOH . X 4 HOH F 18 218 166 HOH HOH . X 4 HOH F 19 219 113 HOH HOH . X 4 HOH F 20 220 149 HOH HOH . Y 4 HOH G 1 301 150 HOH HOH . Y 4 HOH G 2 302 115 HOH HOH . Y 4 HOH G 3 303 118 HOH HOH . Y 4 HOH G 4 304 36 HOH HOH . Y 4 HOH G 5 305 10 HOH HOH . Y 4 HOH G 6 306 76 HOH HOH . Y 4 HOH G 7 307 4 HOH HOH . Y 4 HOH G 8 308 29 HOH HOH . Y 4 HOH G 9 309 80 HOH HOH . Y 4 HOH G 10 310 127 HOH HOH . Y 4 HOH G 11 311 6 HOH HOH . Y 4 HOH G 12 312 30 HOH HOH . Y 4 HOH G 13 313 49 HOH HOH . Y 4 HOH G 14 314 89 HOH HOH . Y 4 HOH G 15 315 101 HOH HOH . Y 4 HOH G 16 316 134 HOH HOH . Y 4 HOH G 17 317 69 HOH HOH . Y 4 HOH G 18 318 119 HOH HOH . Y 4 HOH G 19 319 162 HOH HOH . Y 4 HOH G 20 320 173 HOH HOH . Z 4 HOH H 1 301 56 HOH HOH . Z 4 HOH H 2 302 67 HOH HOH . Z 4 HOH H 3 303 92 HOH HOH . Z 4 HOH H 4 304 46 HOH HOH . Z 4 HOH H 5 305 55 HOH HOH . Z 4 HOH H 6 306 169 HOH HOH . Z 4 HOH H 7 307 98 HOH HOH . Z 4 HOH H 8 308 114 HOH HOH . Z 4 HOH H 9 309 51 HOH HOH . Z 4 HOH H 10 310 83 HOH HOH . Z 4 HOH H 11 311 27 HOH HOH . Z 4 HOH H 12 312 86 HOH HOH . Z 4 HOH H 13 313 19 HOH HOH . Z 4 HOH H 14 314 110 HOH HOH . Z 4 HOH H 15 315 132 HOH HOH . Z 4 HOH H 16 316 120 HOH HOH . Z 4 HOH H 17 317 100 HOH HOH . Z 4 HOH H 18 318 13 HOH HOH . Z 4 HOH H 19 319 70 HOH HOH . Z 4 HOH H 20 320 44 HOH HOH . Z 4 HOH H 21 321 107 HOH HOH . Z 4 HOH H 22 322 99 HOH HOH . Z 4 HOH H 23 323 155 HOH HOH . Z 4 HOH H 24 324 158 HOH HOH . Z 4 HOH H 25 325 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PH2 . . . N 2 -21.127 -14.983 -16.263 1 38.37 ? N1 PH2 202 D 1 HETATM 2 C C2 PH2 . . . N 2 -20.605 -15.316 -15.142 1 47.38 ? C2 PH2 202 D 1 HETATM 3 C C3 PH2 . . . N 2 -19.584 -16.417 -15.064 1 42.42 ? C3 PH2 202 D 1 HETATM 4 N N4 PH2 . . . N 2 -18.743 -16.375 -16.263 1 42.89 ? N4 PH2 202 D 1 HETATM 5 N N5 PH2 . . . N 2 -18.817 -16.433 -18.605 1 44.28 ? N5 PH2 202 D 1 HETATM 6 C C6 PH2 . . . N 2 -19.4 -16.144 -19.743 1 45.37 ? C6 PH2 202 D 1 HETATM 7 N N6 PH2 . . . N 2 -18.804 -16.543 -20.906 1 45.75 ? N6 PH2 202 D 1 HETATM 8 N N7 PH2 . . . N 2 -20.571 -15.466 -19.797 1 44.26 ? N7 PH2 202 D 1 HETATM 9 C C8 PH2 . . . N 2 -21.176 -15.062 -18.668 1 45.32 ? C8 PH2 202 D 1 HETATM 10 O O8 PH2 . . . N 2 -22.221 -14.451 -18.712 1 40.33 ? O8 PH2 202 D 1 HETATM 11 C C9 PH2 . . . N 2 -20.569 -15.368 -17.438 1 40.94 ? C9 PH2 202 D 1 HETATM 12 C C10 PH2 . . . N 2 -19.36 -16.072 -17.455 1 45.73 ? C10 PH2 202 D 1 HETATM 13 C C11 PH2 . . . N 2 -21.008 -14.607 -13.874 1 47.34 ? C11 PH2 202 D 1 HETATM 14 O O4 PH2 . . . N 2 -22.398 -14.299 -13.901 1 51.61 ? O4 PH2 202 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 396 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #