data_8SVK # _model_server_result.job_id G9S7sWSr44uppNP4i9XDqQ _model_server_result.datetime_utc '2025-04-09 01:38:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8svk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":203}' # _entry.id 8SVK # _exptl.entry_id 8SVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8SVK _cell.length_a 67.393 _cell.length_b 67.393 _cell.length_c 140.822 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 216 n n C1 C2 PEG sing 217 n n C1 H11 PEG sing 218 n n C1 H12 PEG sing 219 n n O1 HO1 PEG sing 220 n n C2 O2 PEG sing 221 n n C2 H21 PEG sing 222 n n C2 H22 PEG sing 223 n n O2 C3 PEG sing 224 n n C3 C4 PEG sing 225 n n C3 H31 PEG sing 226 n n C3 H32 PEG sing 227 n n C4 O4 PEG sing 228 n n C4 H41 PEG sing 229 n n C4 H42 PEG sing 230 n n O4 HO4 PEG sing 231 n n # _atom_sites.entry_id 8SVK _atom_sites.fract_transf_matrix[1][1] 0.014838 _atom_sites.fract_transf_matrix[1][2] 0.008567 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PEG A 1 201 201 PEG PEG . F 3 PGE A 1 202 202 PGE PGE . G 3 PGE B 1 201 201 PGE PGE . H 2 PEG B 1 202 202 PEG PEG . I 3 PGE D 1 201 202 PGE PGE . J 4 PG4 D 1 202 203 PG4 PG4 . K 2 PEG D 1 203 204 PEG PEG . L 5 SO4 D 1 204 1 SO4 SO4 . M 6 HOH A 1 301 17 HOH HOH . M 6 HOH A 2 302 19 HOH HOH . M 6 HOH A 3 303 10 HOH HOH . M 6 HOH A 4 304 12 HOH HOH . M 6 HOH A 5 305 11 HOH HOH . M 6 HOH A 6 306 18 HOH HOH . N 6 HOH B 1 301 3 HOH HOH . N 6 HOH B 2 302 1 HOH HOH . N 6 HOH B 3 303 14 HOH HOH . N 6 HOH B 4 304 7 HOH HOH . N 6 HOH B 5 305 2 HOH HOH . N 6 HOH B 6 306 4 HOH HOH . N 6 HOH B 7 307 15 HOH HOH . N 6 HOH B 8 308 5 HOH HOH . N 6 HOH B 9 309 16 HOH HOH . N 6 HOH B 10 310 9 HOH HOH . N 6 HOH B 11 311 13 HOH HOH . N 6 HOH B 12 312 20 HOH HOH . N 6 HOH B 13 313 6 HOH HOH . O 6 HOH D 1 301 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . K 2 13.462 -23.846 26.221 1 78.95 ? C1 PEG 203 D 1 HETATM 2 O O1 PEG . . . K 2 12.939 -22.556 26.493 1 85.1 ? O1 PEG 203 D 1 HETATM 3 C C2 PEG . . . K 2 14.757 -23.764 25.472 1 81.72 ? C2 PEG 203 D 1 HETATM 4 O O2 PEG . . . K 2 15.653 -24.749 25.966 1 85.23 ? O2 PEG 203 D 1 HETATM 5 C C3 PEG . . . K 2 15.36 -26.054 25.488 1 83.06 ? C3 PEG 203 D 1 HETATM 6 C C4 PEG . . . K 2 16.482 -26.979 25.846 1 76.22 ? C4 PEG 203 D 1 HETATM 7 O O4 PEG . . . K 2 17.736 -26.445 25.456 1 78.71 ? O4 PEG 203 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #