data_8SVP # _model_server_result.job_id unYXcrqapgpmmFqyGudsEQ _model_server_result.datetime_utc '2025-01-10 20:21:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8svp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8SVP # _exptl.entry_id 8SVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.626 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (1P)-N-(5-tert-butyl-2-{[(3R)-hexan-3-yl]oxy}phenyl)-1-(2,5-dimethoxyphenyl)-5-methyl-1H-1,2,3-triazole-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8SVP _cell.length_a 85.041 _cell.length_b 87.349 _cell.length_c 106.274 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8SVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C28 H38 N4 O4' _chem_comp.formula_weight 494.626 _chem_comp.id YGO _chem_comp.mon_nstd_flag . _chem_comp.name (1P)-N-(5-tert-butyl-2-{[(3R)-hexan-3-yl]oxy}phenyl)-1-(2,5-dimethoxyphenyl)-5-methyl-1H-1,2,3-triazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C16 YGO sing 452 n n C18 C16 YGO sing 453 n n C17 C16 YGO sing 454 n n C16 C15 YGO sing 455 n n C23 C22 YGO sing 456 n n C35 O34 YGO sing 457 n n O01 C02 YGO doub 458 n n C15 C20 YGO doub 459 n y C15 C14 YGO sing 460 n y C31 C32 YGO doub 461 n y C31 C28 YGO sing 462 n y C32 C33 YGO sing 463 n y C30 O29 YGO sing 464 n n C20 C04 YGO sing 465 n y C22 C21 YGO doub 466 n y C22 N24 YGO sing 467 n y O29 C28 YGO sing 468 n n C28 C27 YGO doub 469 n y C33 O34 YGO sing 470 n n C33 C36 YGO doub 471 n y C02 C21 YGO sing 472 n n C02 N03 YGO sing 473 n n C27 C36 YGO sing 474 n y C27 N24 YGO sing 475 n n C14 C13 YGO doub 476 n y C21 N26 YGO sing 477 n y N24 N25 YGO sing 478 n y C04 N03 YGO sing 479 n n C04 C05 YGO doub 480 n y C13 C05 YGO sing 481 n y N26 N25 YGO doub 482 n y C05 O06 YGO sing 483 n n C08 C09 YGO sing 484 n n C08 C07 YGO sing 485 n n O06 C07 YGO sing 486 n n C07 C10 YGO sing 487 n n C12 C11 YGO sing 488 n n C10 C11 YGO sing 489 n n C07 H1 YGO sing 490 n n C08 H2 YGO sing 491 n n C08 H3 YGO sing 492 n n C09 H4 YGO sing 493 n n C09 H5 YGO sing 494 n n C09 H6 YGO sing 495 n n C10 H7 YGO sing 496 n n C10 H8 YGO sing 497 n n C11 H9 YGO sing 498 n n C11 H10 YGO sing 499 n n C12 H11 YGO sing 500 n n C12 H12 YGO sing 501 n n C12 H13 YGO sing 502 n n C13 H14 YGO sing 503 n n C14 H15 YGO sing 504 n n C17 H16 YGO sing 505 n n C17 H17 YGO sing 506 n n C17 H18 YGO sing 507 n n C18 H19 YGO sing 508 n n C18 H20 YGO sing 509 n n C18 H21 YGO sing 510 n n C19 H22 YGO sing 511 n n C19 H23 YGO sing 512 n n C19 H24 YGO sing 513 n n C20 H25 YGO sing 514 n n C23 H26 YGO sing 515 n n C23 H27 YGO sing 516 n n C23 H28 YGO sing 517 n n C30 H29 YGO sing 518 n n C30 H30 YGO sing 519 n n C30 H31 YGO sing 520 n n C31 H32 YGO sing 521 n n C32 H33 YGO sing 522 n n C35 H34 YGO sing 523 n n C35 H35 YGO sing 524 n n C35 H36 YGO sing 525 n n C36 H37 YGO sing 526 n n N03 H38 YGO sing 527 n n # _atom_sites.entry_id 8SVP _atom_sites.fract_transf_matrix[1][1] 0.011759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WSX A 1 501 501 WSX WSX . D 3 YGO A 1 502 502 YGO YGO . E 2 WSX B 1 501 501 WSX WSX . F 3 YGO B 1 502 502 YGO YGO . G 4 HOH A 1 601 602 HOH HOH . G 4 HOH A 2 602 603 HOH HOH . H 4 HOH B 1 601 601 HOH HOH . H 4 HOH B 2 602 602 HOH HOH . H 4 HOH B 3 603 603 HOH HOH . H 4 HOH B 4 604 604 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 YGO . B . D 3 11.473 31.863 23.572 0.47 91.33 ? C02 YGO 502 A 1 HETATM 2 C C04 YGO . B . D 3 13.252 33.643 24.273 0.47 95.87 ? C04 YGO 502 A 1 HETATM 3 C C05 YGO . B . D 3 14.065 34.174 25.33 0.47 96.47 ? C05 YGO 502 A 1 HETATM 4 C C07 YGO . B . D 3 15.053 33.008 27.275 0.47 91.65 ? C07 YGO 502 A 1 HETATM 5 C C08 YGO . B . D 3 15.63 31.909 26.306 0.47 90.47 ? C08 YGO 502 A 1 HETATM 6 C C09 YGO . B . D 3 16.462 30.829 27.023 0.47 84.31 ? C09 YGO 502 A 1 HETATM 7 C C10 YGO . B . D 3 14.561 32.295 28.596 0.47 89.77 ? C10 YGO 502 A 1 HETATM 8 C C11 YGO . B . D 3 13.025 32.249 28.771 0.47 88.28 ? C11 YGO 502 A 1 HETATM 9 C C12 YGO . B . D 3 12.255 31.445 27.71 0.47 87.06 ? C12 YGO 502 A 1 HETATM 10 C C13 YGO . B . D 3 14.985 35.193 25.014 0.47 100.4 ? C13 YGO 502 A 1 HETATM 11 C C14 YGO . B . D 3 15.135 35.698 23.702 0.47 101.86 ? C14 YGO 502 A 1 HETATM 12 C C15 YGO . B . D 3 14.366 35.209 22.636 0.47 101.22 ? C15 YGO 502 A 1 HETATM 13 C C16 YGO . B . D 3 14.53 35.773 21.183 0.47 105.19 ? C16 YGO 502 A 1 HETATM 14 C C17 YGO . B . D 3 15.87 36.531 20.997 0.47 105.4 ? C17 YGO 502 A 1 HETATM 15 C C18 YGO . B . D 3 13.391 36.767 20.829 0.47 110.78 ? C18 YGO 502 A 1 HETATM 16 C C19 YGO . B . D 3 14.499 34.64 20.13 0.47 104.66 ? C19 YGO 502 A 1 HETATM 17 C C20 YGO . B . D 3 13.44 34.183 22.98 0.47 97.41 ? C20 YGO 502 A 1 HETATM 18 C C21 YGO . B . D 3 10.48 30.765 23.936 0.47 90.15 ? C21 YGO 502 A 1 HETATM 19 C C22 YGO . B . D 3 9.69 29.913 23.13 0.47 90.39 ? C22 YGO 502 A 1 HETATM 20 C C23 YGO . B . D 3 9.583 29.824 21.663 0.47 90.23 ? C23 YGO 502 A 1 HETATM 21 C C27 YGO . B . D 3 7.99 28.036 23.622 0.47 91.16 ? C27 YGO 502 A 1 HETATM 22 C C28 YGO . B . D 3 6.691 28.385 23.252 0.47 89.59 ? C28 YGO 502 A 1 HETATM 23 C C30 YGO . B . D 3 4.915 29.985 22.952 0.47 91.72 ? C30 YGO 502 A 1 HETATM 24 C C31 YGO . B . D 3 5.798 27.347 22.914 0.47 88.33 ? C31 YGO 502 A 1 HETATM 25 C C32 YGO . B . D 3 6.206 26.002 22.95 0.47 89.42 ? C32 YGO 502 A 1 HETATM 26 C C33 YGO . B . D 3 7.507 25.66 23.322 0.47 90.28 ? C33 YGO 502 A 1 HETATM 27 C C35 YGO . B . D 3 8.654 23.845 22.243 0.47 84.16 ? C35 YGO 502 A 1 HETATM 28 C C36 YGO . B . D 3 8.41 26.694 23.662 0.47 91.74 ? C36 YGO 502 A 1 HETATM 29 N N03 YGO . B . D 3 12.265 32.565 24.567 0.47 93.31 ? N03 YGO 502 A 1 HETATM 30 N N24 YGO . B . D 3 8.974 29.105 23.986 0.47 89.7 ? N24 YGO 502 A 1 HETATM 31 N N25 YGO . B . D 3 9.262 29.397 25.315 0.47 88.65 ? N25 YGO 502 A 1 HETATM 32 N N26 YGO . B . D 3 10.142 30.365 25.267 0.47 89.71 ? N26 YGO 502 A 1 HETATM 33 O O01 YGO . B . D 3 11.574 32.127 22.408 0.47 91.4 ? O01 YGO 502 A 1 HETATM 34 O O06 YGO . B . D 3 13.964 33.724 26.653 0.47 94.01 ? O06 YGO 502 A 1 HETATM 35 O O29 YGO . B . D 3 6.277 29.702 23.209 0.47 90.27 ? O29 YGO 502 A 1 HETATM 36 O O34 YGO . B . D 3 7.913 24.33 23.358 0.47 88.17 ? O34 YGO 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #